Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11305
- Subject:
- XR_001740350.2
- Aligned Length:
- 4926
- Identities:
- 1073
- Gaps:
- 3812
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCCGTGCCGAGTTTCCTGTTTAAGATGGCGTCCCCCGTAGCAGCGCAGGCCGGGAAGCTTCTGCGAGCCCTAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTGCGGCCCCGCTTCCTGGCGGCCGGGTCCCAGGCAGTTCAATTAACCTCCAGAAGATGGCTGAACCTGCAG 148
Query 1 ---------------------ATGTCTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAA 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GAATACCAGAGCAAGAAACTGATGTCTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAA 222
Query 54 TGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAA 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAA 296
Query 128 GAGGAAAAGGTGTCTTCAATAGTGGTTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGGAAAAGGTGTCTTCAATAGTGGTTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAG 370
Query 202 CTGGCTAAACAGATGATTGGGTACAATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGGCTAAACAGATGATTGGGTACAATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGT 444
Query 276 GATGGTTGCTGAAGCCTTGGATATTTCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATGGTTGCTGAAGCCTTGGATATTTCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCC 518
Query 350 CCGTGCTGGTGGGCAGCCCCCAGGGGGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCGTGCTGGTGGGCAGCCCCCAGGGGGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTT 592
Query 424 AAGGAGCAAATTGACATTTTTGAAGGAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGGAGCAAATTGACATTTTTGAAGGAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGT 666
Query 498 TGGGCCTTTGAAAAGCCAGGCTGCAGATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGGCCTTTGAAAAGCCAGGCTGCAGATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTC 740
Query 572 AGGTGGAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGAT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGGTGGAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGAT 814
Query 646 GACAACGCAGAATTCCGACAAAAAGACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACAACGCAGAATTCCGACAAAAAGACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGA 888
Query 720 AGCTGCCAAATATGATCTAAAATACATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGCTGCCAAATATGATCTAAAATACATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCG 962
Query 794 CCATGGCTACTTGTGATATCATTTTCCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCATGGCTACTTGTGATATCATTTTCCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTA 1036
Query 868 AAGGAAGCTCAAGTATATCAAGCATTCAAATTGCTCACAGCTGATCCTAAG--------GTTGAA--------- 924
||||||||||||||||||||||||||||||||||||||||||||||||||| .|||||
Sbjct 1037 AAGGAAGCTCAAGTATATCAAGCATTCAAATTGCTCACAGCTGATCCTAAGCAGCAAAATTTGAAAGCAAGAAA 1110
Query 925 ------GCCATC--------------------------------CTTGTCAATA-----TATTTGG---TGGTA 952
|.||.| ||||..|||| .||.||| |||
Sbjct 1111 TACTTGGGCACCAGAATACAGGACTCAGAAGCACGTTCTTGAAGCTTGGAAATAGGACCAATATGGAGCTGG-- 1182
Query 953 TCGTCAACT-GTGCCATCAT-TGCCAATGGGA-TCAC--------CAAAGCCTGCC---GGGAGCTAGAAC--- 1009
|||| .||.| |||| | ||||| ||.| .|.||.||||| ||||| |.||||
Sbjct 1183 -----AACTCCTGAC-TCATCT-----TGGGAGTCTCTGATTATAGAGAGACTGCCAGAGGGAG-TGGAACGAA 1244
Query 1010 --------TCAAGGTGCCCCTG----------GTGGTCCGGCTTGAA-GGAA----------CCAAC------- 1047
|.|..||.|||||| |.||| |..|.|||| |||| |||.|
Sbjct 1245 CATGGACTTTACAGTTCCCCTGACTGCTTTCAGAGGT-CAACCTGAATGGAAACTTGACTCTCCATCAAGTTAC 1317
Query 1048 -GTCCAAGAGGCCCAGAAGATACTCAACAACAGCGGAC---TCC---CCATTACTTCAG--------------- 1099
||| ||||||.||| |||..||..||..|.| ||| |.||.|.|||||
Sbjct 1318 TGTC-------CCCAGAGGAT-CTCTCCATAAGATGTCGTTTCCATGCTATCAGTTCAGAGAAGTTGGAATAAA 1383
Query 1100 ---------------CCATTGACCTG----GAGGATGCAGCCAA--------------GAAGGCTGTGGCCAGT 1140
|.||||| || .|..|||| |||| .||||.||| |
Sbjct 1384 ATGGTTGGTTCATCTCAATTGA--TGAATTTAAAATGC--CCAAATCTTGTTTTGTATTAAGGGTGT------T 1447
Query 1141 GTGGCCAAGAAG-------------------------------------------------------------- 1152
|| |.|||
Sbjct 1448 GT-----ATAAGACATTTCCTTTTGATTCTGAGATTTTCAGGCAGGATCGTGGACTCACTAAAATTATTTCTTT 1516
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1517 TTTCCTTGGAAGAAATTAAAAGGGCAGAGTGGGAGGGTATCTTTCGAGGAATGCTGTTTTTCACATGTCAGTTT 1590
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1591 TAGCTATTTTGGAGGTACATGAGTTGCTTTATTCCAAGGATCCTGGCATTTGAAGTCACACAAAAGAAAATAAT 1664
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1665 TTCAAACTCCAAGAATATACCAAAGGTAGAAAAGTGAGCCTGAGCAGCTTGCCATAATTTCAGCAGAAGGCAAA 1738
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1739 TCTGGTCCCAATCGAACCAATCTGTTGGTTTATTTGTATTATTACAACAAAGCCCAAGATTGAATTCCTCACCT 1812
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1813 GAATCACTTCCTTATTGACTGAATCTATTTAGACTCCCCTCTAATTTAGCAGAGTATTTTTTATTAAATCCAGG 1886
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1887 CATACAAACATCAATTATCCAAGCTGCATCTCATTTCCTTCACCATTTATTTTCCTTCGTTGGCTGCCAGTGGA 1960
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1961 TTAGAAGACATGATTAGAATTCATCAGGAAAATAAAAACAACAAAAAAGAAAAACAGTTTCACAAAAACAGATG 2034
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2035 CTTAAACAAGAGCAACAACATTCAGAATTAAAATAACCTGTGATTTTTTTAAAAAAGTCCTTATCTTGGCTAAT 2108
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2109 ATAAACATGCTTGCTTGATTTTTATCAACCTCATGCCTGCTACAGTGGGACTAAATTAGCATTCGTGATTGGAA 2182
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2183 TAGGCACAGACAAAACCTAATAGTTGCACTTACTGTGCTTCACGTATATGCTACAGTGTTTTTAAATACAATGC 2256
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2257 AGTACTTAACTATTTGCAATAACCTTTGCAAAGTAGCTGGCTTACTCTGAAAGTTTTCTATTTTTTCACTTCCA 2330
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2331 ACCAATGTCAGGGAGGAAAAAAGAACAAAACAGAGACTTTCCTTCTATGAACTTGTTAAAGGTAACAGGTTTTG 2404
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2405 TTTTAAAGGAATGTTATTAAAGTTGGACTCCTTTATGTAATTGGCCACCACTACTGCCTGGGTACCTTTGTGTT 2478
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2479 ATCAGTGATGGCAAGAAAATAACACAACAAAGAAAGACAACGTAATGTCTGAAAAGTGTTATCAAAGATATATC 2552
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2553 AAGTGACATGAAGAAGGAGGGGTGATGGTATACTTGCCATGAATTTGAGGGGAAATGAACCAAATCACATCTGT 2626
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2627 GTCAGGTTAGCAAACTATGACCTGTGGGCCAAATCTGGCTCACCGCTTGTTGTTGTAAATAAAGTTTTATTGGA 2700
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2701 ATACACCATGCTTATTTACTTATATATTGTTTGTCTATGATTGCTTTCATGCTGCAACAAGGGTAAGTAGTTGT 2774
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2775 GACAGAGACGGGCTCAAAAAACCTAAAATATATACTGATAGAGCTCTTAAAAGCAAGATGTTGTCGATCCCTGG 2848
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2849 TGAATGTCAGTGGCTCCTTTATCATTATCCAGCTATTCCTAACTGCCCTGCATGTGCTGTGGTGAAACAGTGTT 2922
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2923 GGTTTGAACTGTAACTGCTTAATAGCTAGGAAACCCTAAATTTTCTGAGACTCAGTTTATCTATAAAATGAAGG 2996
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2997 TTAAAAATACATTTATAAGCTTATTGTAAATTCATTGTAGATGCTCAATAAATGTTAATTTCCTTCCTGACCTT 3070
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3071 ACTGTAGTCTGTGTAGGTGTCTCAAAACCAAAGGCTTCTCAAACTCTTTGTCATGGCGTTTGCTCTGTGAGACT 3144
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3145 CTGCATGATTTGCGAGGGGGCCCATCTTGTTTCCATCACTCTACTTCTCAGGCCCCAGGGACCTGATACTCCAG 3218
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3219 ATTCTGTTCAGTTTCTCAAATGCACCACACTCTTTTCTGTTCCTCCACCTGTATACATGGTATTCTGTTGTCTT 3292
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3293 AAGATACTTTTCTCCCTCTCTTAATCTTGATCTACCTGCCCTCTTCCCAACTGCCCTTCAGACTCTAGCTTAAA 3366
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3367 TGTCTCTGCCTATGAGAGGCCCTCCCTCACCACCTGGTGTAATATAGGTCCTGTCCTGCTACTCACATAGGACC 3440
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3441 TAGCATTTTCCTCCCCTTCATAACTATTATCGTGGTTTGCAGTTTTAGATATATAGAACCTTTTTGTCTAATTT 3514
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3515 TAAAATCTTTCTTGCTGGCTTAGCTACTGCCTACAAGCACAGGGCACATAGTAGGCCGTGAAGAATATATATTA 3588
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3589 AATTAATAACTTTTTATTGAGCAGTCTTGCAATATTTTTATTTCATTAAGGGGACTCAGGATCATGTTGAATAA 3662
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3663 AAAGAGCTGAATTTTTTAGACTGACAGCAAACAGGCTGCCTAATTTGGCACAATTTGTTTCTACCTCTGAGTCT 3736
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3737 TGGTTTTCTCATCTGCGAAAGGGGGGTAGGTAATATCTGTCTCACAAGTATATGGCAGAGTTGGTTGTGGTAAT 3810
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3811 GAACACAAAGAGACTAAGCCATCACTCATTGTAGGGCTTCTCTAGGTTTGCTGGCTTGGAAGGATATTTGACAG 3884
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3885 TAGATAAAGCTGTAACCCCTGATTCTCCCAGATCTTCACCTCAATTTGGGGATGATTATACCCACCTCCTGTGA 3958
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3959 TACTCATGTGTTAAATGCGTTAGTACATATACAATAATTAGAATACTGAGTACAACCTGCTAAATGCTTTAGTA 4032
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4033 ACGTTAATTATGGTTGTATTTGTGATAGCTATTCATATATCAACTCTAGAGGATTATGTACACTTTGCCCAGAA 4106
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4107 AAATACACATTCAGACAAAAATTCTGTGGACAGCTGCGAAGAATTCACTATTCCTCTGAAACTCATAGCCCTCT 4180
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4181 CCTGAATACATATGGTGTGCACTAACACTTGCCATTATCTGAAACTCATAGCCCTATCCTGAATGCATATGCTG 4254
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4255 TAGGTTACCACTTGCCATTGGAGGTCTTGGAGGCCATATCCTGTAGGAGCAGGGTAGCCATGGGACTTAACTAC 4328
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4329 TATTATCCCCCAAAAATGTTGTGTTTGTGAATTCACCTGACTGAGGAATCCCTAATATTCATCAGATATTCAAA 4402
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4403 AGGATCCATGTTCCAAAGAAGAGGTTTAGTATTGATTTTTGTTGGTTTGTTTATTTGAGCAGTGGGGATGATGT 4476
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4477 CAAAAGAAGCTTGATAAATAGCAAGGGCTGTAGCTGTTCTTTTTTCAAAGTTTAGTTTTTACTTTTAATTGTGT 4550
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4551 ACTAAAATCTGCAGCTAGAGTGTGTTTTGCAAAGCAAAACACCCAGACATTTGAAAAACTTGTGTATGGACTGC 4624
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4625 CTGACCACCTGCACAGCTGCCAGAGCAAACTTGCCTTGGGATCAGCTGTCTGGGGTCTGGGGACCCGGGCCCTG 4698
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4699 TATCTGGCACTTCAACTGCCTCATTAGATGATCTTTACTTTTGTAAAACAGTAAATAGCAACCCTCATAATTCT 4772
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4773 CACCCGAGAATTAGAAAAAGCCTCTGTTCCCAAAAGCACTTGGGATCTTCCGGGAGAGTCTCTGGTTACTTAAA 4846
Query 1153 ------------------------------------------ 1152
Sbjct 4847 TAGACCTAACACTGAATTCTTAAAAAAAAAAAAAAAAAAAAA 4888
