Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11327
- Subject:
- NM_001130527.3
- Aligned Length:
- 3967
- Identities:
- 320
- Gaps:
- 3608
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGCTGGAGGACGGTGTGGTGTATCAGGAGGAGCCCGGCGGCTCCGGGGCCGTGATGTCGGAGCGGGTGTC 74
Query 1 --------------------------------------------------ATGA----------GTC------C 8
|||| ||| |
Sbjct 75 CGGCCTGGCCGGCTCCATCTACCGCGAGTTCGAGCGGCTTATCGGGCGCTATGACGAGGAGGTGGTCAAAGAGC 148
Query 9 TGGATGCATGCTGCTGTTTGTGTTTG-GCT----------------TTGTTGGCG--GGGC-----------GG 52
|| ||||.||||.|.|||..|| ||| .||||.||| ||.| ||
Sbjct 149 TG-----ATGCCGCTGGTGGTGGCTGTGCTGGAGAACCTGGACTCGGTGTTCGCGCAGGACCAGGAGCACCAGG 217
Query 53 TGG----------------------------------------------------------------------- 55
|||
Sbjct 218 TGGAGCTGGAGCTGCTGCGGGACGACAACGAGCAGCTCATCACCCAGTACGAGCGGGAGAAGGCGCTGCGCAAG 291
Query 56 ----------------TCATT-AATTCTG----CTATC------------------------------------ 72
||||| |||| || ||.||
Sbjct 292 CACGCTGAGGAGAAATTCATTGAATT-TGAAGACTCTCAAGAACAGGAAAAAAAGGACTTACAGACCCGAGTGG 364
Query 73 -----TTAGTATCTC----------TCT----CTG-----------TTTTGCTG--------------CTTG-- 100
||||.||||| .|| ||| .|.||||| ||||
Sbjct 365 AATCTTTAGAATCTCAAACAAGACAACTTGAGCTGAAAGCGAAAAACTATGCTGACCAGATTAGCAGACTTGAA 438
Query 101 --------------------------------TGCACTTTTC-------------------------TATTTCT 117
|||| ||.| ||.||.|
Sbjct 439 GAAAGAGAAGCAGAACTGAAGAAGGAATATAATGCA--TTACATCAAAGACACACTGAGATGATCCATAATTAT 510
Query 118 ACCGGTG----------------------TGC--CAGCTCTGACGCAG-----AACCTA----CCA-------- 150
| || |.| |||||||.|.|.|| || ||| |||
Sbjct 511 A----TGGAACATTTAGAAAGAACAAAACTTCATCAGCTCTCAGGGAGTGATCAA-CTAGAATCCACAGCTCAT 579
Query 151 AGGATACTCAGAAAAGAACGCCCTATATCATTAGGAATTTTCCCATTACCTGCTGGAGATGGATTGCTTACACC 224
||.|.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGTAGAATTAGAAAAGAACGCCCTATATCATTAGGAATTTTCCCATTACCTGCTGGAGATGGATTGCTTACACC 653
Query 225 TGATGCTCAGAAAGGAGGAGAGACCCCTGGATCTGAGCAATGGAAATTTCAGGAATTAAGTCAACCACGTTCTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGATGCTCAGAAAGGAGGAGAGACCCCTGGATCTGAGCAATGGAAATTTCAGGAATTAAGTCAACCACGTTCTC 727
Query 299 ATACCAGCCTGAAG---------------GTCAGCAATAGTC----CTGAACCT--CAGAAGGCTGTAG----A 347
|||||||||||||| ||.|||.| ||.| ||.||.|| || ||..|| |
Sbjct 728 ATACCAGCCTGAAGGATGAGCTTTCTGATGTTAGCCA-AGGCGGATCTAAAGCTACCA-----CTCCAGCATCA 795
Query 348 ACAGGAGGTGAGAATGGTGCTTCTTAACATTTTGCAAAAAGT-------ATAC--------------------- 393
||| |||..||.|.||.|.||||.||.| ||||
Sbjct 796 ACA---------------GCTAATTCAGATGTGGCAACAATTCCTACTGATACTCCCTTAAAGGAAGAAAACGA 854
Query 394 -------------------------------------------------------------------------- 393
Sbjct 855 AGGATTTGTGAAGGTTACAGATGCGCCAAATAAATCAGAGATAAGCAAACACATTGAAGTACAGGTAGCCCAGG 928
Query 394 -------------------------------------------------------------------------- 393
Sbjct 929 AAACTAGAAATGTATCTACTGGCTCTGCTGAAAATGAAGAAAAGTCAGAAGTTCAAGCAATCATCGAATCTACT 1002
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1003 CCTGAGCTGGATATGGACAAAGATCTCAGTGGATATAAAGGTTCAAGCACTCCCACCAAAGGCATAGAGAACAA 1076
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1077 AGCTTTTGATCGCAATACAGAATCTCTCTTTGAAGAACTGTCTTCAGCTGGCTCAGGCCTAATAGGAGATGTGG 1150
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1151 ATGAAGGAGCAGATTTACTAGGAATGGGTCGGGAAGTTGAGAATCTTATATTAGAAAATACACAACTGTTGGAA 1224
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1225 ACCAAAAATGCTTTGAACATAGTGAAGAATGATTTGATAGCAAAAGTGGATGAACTGACCTGTGAGAAAGATGT 1298
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1299 GCTGCAAGGGGAATTGGAGGCTGTGAAGCAAGCCAAACTGAAACTAGAGGAAAAGAACAGAGAATTGGAGGAAG 1372
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1373 AGCTTAGGAAAGCTCGGGCAGAAGCTGAAGATGCAAGGCAAAAAGCAAAAGATGACGATGATAGTGATATTCCC 1446
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1447 ACAGCCCAGAGGAAACGGTTTACTAGAGTAGAAATGGCCCGTGTTCTCATGGAGCGAAACCAGTATAAAGAGAG 1520
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1521 ATTGATGGAGCTTCAGGAAGCTGTTCGATGGACAGAGATGATTCGGGCATCACGAGAAAATCCAGCCATGCAGG 1594
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1595 AAAAAAAAAGGTCAAGCATTTGGCAGTTTGTGCCAACTCGTTTCAGCCGACTTTTCAGCTCCTCAAGTAACACG 1668
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1669 ACTAAGAAGCCTGAACCACCTGTTAATCTGAAGTACAATGCACCCACGTCTCATGTTACTCCGTCCGTCAAGAA 1742
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1743 AAGAAGCAGCACCTTATCTCAGCTCCCTGGGGATAAGTCCAAAGCCTTTGATTTCCTTAGTGAAGAAACTGAAG 1816
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1817 CTAGTTTAGCCTCACGCAGAGAACAAAAGAGAGAGCAGTATCGTCAGGTAAAAGCACATGTTCAGAAGGAAGAC 1890
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1891 GGTAGAGTGCAGGCTTTTGGCTGGAGTCTGCCTCAGAAGTACAAACAGGTAACCAATGGTCAAGGTGAAAATAA 1964
Query 394 -------------------------------------------------------------------------- 393
Sbjct 1965 GATGAAAAATTTACCTGTGCCTGTCTATCTCAGACCTCTGGATGAAAAAGATACATCAATGAAGCTGTGGTGTG 2038
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2039 CTGTTGGAGTCAATTTATCTGGTGGGAAGACCAGAGATGGTGGTTCTGTTGTTGGAGCAAGTGTATTTTACAAG 2112
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2113 GATGTTGCTGGTTTGGATACAGAAGGCAGTAAACAGCGAAGTGCCTCTCAGAGTAGTTTAGATAAGTTAGATCA 2186
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2187 GGAACTTAAGGAACAGCAGAAGGAGTTAAAAAATCAAGAAGAATTATCCAGTCTAGTTTGGATCTGTACCAGCA 2260
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2261 CTCATTCGGCTACAAAAGTTCTTATTATTGATGCTGTTCAACCTGGCAACATCCTAGACAGTTTCACTGTTTGC 2334
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2335 AACTCTCATGTTCTGTGCATTGCAAGTGTGCCAGGTGCACGAGAAACAGACTACCCTGCAGGAGAAGATCTTTC 2408
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2409 AGAATCTGGTCAGGTAGACAAAGCATCTTTATGTGGAAGTATGACAAGCAACAGCTCAGCAGAGACAGACAGCC 2482
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2483 TGTTAGGAGGCATCACAGTGGTTGGTTGTTCTGCAGAAGGTGTGACGGGAGCTGCCACTTCCCCTAGTACAAAT 2556
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2557 GGTGCTTCTCCAGTGATGGATAAACCACCAGAAATGGAAGCAGAAAATAGTGAGGTTGATGAAAATGTTCCAAC 2630
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2631 AGCAGAAGAAGCAACTGAAGCTACAGAAGGGAATGCGGGGTCAGCTGAAGACACAGTGGACATCTCCCAAACTG 2704
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2705 GCGTCTACACAGAGCATGTCTTTACAGATCCTTTGGGAGTTCAGATCCCAGAAGACCTCTCCCCAGTGTATCAG 2778
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2779 TCGAGCAATGACTCAGATGCATATAAAGATCAAATATCAGTACTGCCAAATGAACAAGACTTGGTGAGAGAAGA 2852
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2853 AGCCCAGAAAATGAGTAGTCTTTTACCAACTATGTGGCTTGGAGCTCAAAATGGCTGTTTGTATGTCCATTCAT 2926
Query 394 -------------------------------------------------------------------------- 393
Sbjct 2927 CTGTAGCCCAGTGGAGGAAATGTCTCCATTCCATTAAACTTAAAGATTCGATTCTCAGTATTGTACACGTGAAG 3000
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3001 GGAATCGTGTTAGTAGCCCTGGCTGACGGCACCCTTGCAATCTTTCACAGAGGAGTGGATGGGCAGTGGGATTT 3074
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3075 GTCAAACTATCACCTCTTAGACCTTGGACGGCCTCATCATTCCATCCGTTGCATGACTGTGGTACATGACAAAG 3148
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3149 TCTGGTGTGGCTATAGGAACAAAATCTATGTGGTGCAGCCAAAGGCCATGAAAATAGAGAAATCTTTTGATGCA 3222
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3223 CATCCCAGGAAGGAGAGCCAAGTGCGACAGCTTGCGTGGGTGGGGGATGGCGTGTGGGTCTCCATTCGCTTGGA 3296
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3297 TTCTACGCTCCGTCTCTATCATGCACACACTTATCAACATCTACAGGATGTGGACATTGAGCCTTATGTAAGCA 3370
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3371 AAATGTTAGGTACTGGAAAACTGGGCTTCTCTTTTGTGAGAATTACAGCTCTTATGGTGTCTTGTAATCGTTTG 3444
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3445 TGGGTGGGGACAGGAAATGGTGTCATTATCTCCATCCCATTGACAGAAACAAATAAAACCTCAGGTGTACCAGG 3518
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3519 AAATCGTCCTGGAAGTGTAATCCGTGTATATGGTGATGAAAACAGTGATAAAGTGACTCCAGGGACATTTATAC 3592
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3593 CCTATTGTTCAATGGCACATGCACAGCTTTGCTTCCATGGGCACCGGGATGCTGTGAAATTCTTTGTGGCAGTC 3666
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3667 CCAGGTCAAGTCATCAGCCCACAAAGTAGCAGTAGTGGCACGGATCTGACGGGTGACAAAGCAGGGCCATCTGC 3740
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3741 ACAGGAGCCTGGTAGTCAGACGCCCTTGAAGTCTATGCTTGTCATCAGTGGAGGAGAGGGCTACATCGACTTCC 3814
Query 394 -------------------------------------------------------------------------- 393
Sbjct 3815 GAATGGGTGATGAAGGTGGAGAATCAGAACTTCTTGGAGAGGATCTTCCACTTGAACCTTCTGTCACCAAAGCA 3888
Query 394 --------------------------------------------- 393
Sbjct 3889 GAAAGGAGTCACTTGATAGTGTGGCAAGTGATGTATGGCAATGAG 3933
