Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11342
- Subject:
- XM_006498642.2
- Aligned Length:
- 1842
- Identities:
- 1129
- Gaps:
- 582
Alignment
Query 1 ATGGGGTTTCACCATGTTGGCCAGGCTCGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCATTGGCCTCCCA 74
|||.||| .|||| |||| ||.|.||| ||||.|||
Sbjct 1 -------------ATGGTGG------GCGTC-------CCTG---------GAGCGGCC-------GCCTTCCA 32
Query 75 ACGTGCTGGGATTACAGTTGGTCCTGAGAAAAGGGTGCCAGCGATGCCTGGATCGCCTGTGGAAGTGAAGATAC 148
|| |||||..||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 33 AC---------------TTGGTTGTGAGAAAAGGGTGCCAGCAATGCCTGGATCGCCTGTGGAAGTGAAGATAC 91
Query 149 AGTCCAGATCCTCACCTCCCACCATGCCACCCCTCCCACCAATAAATCCTGGAGGACCGAGGCCAGTGTCCTTC 222
||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 92 AGTCAAGATCCTCACCTCCCATCATGCCACCCCTCCCACCAATAAATCCTGGAGGACCGAGGCCAGTGTCCTTT 165
Query 223 ACTCCTACTGCATTAAGCAATGGCATCAACCATTCTCCTCCTACCCTGAATGGTGCCCCATCACCGCCACAGAG 296
||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||.||.||||||||
Sbjct 166 ACTCCTACAGCATTAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCGCCACCACAGAG 239
Query 297 ATTCAGCAATGGTCCTGCCTCCTCCACATCATCTGCACTCACAAATCAGCAATTGCCAGCCACTTGTGGTGCTC 370
||||||||||||.|||||||||||||||||.||.|||||.||.|||||.||..||||.||.|||||||||||||
Sbjct 240 ATTCAGCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAACGAATCAACAGCTGCCGGCTACTTGTGGTGCTC 313
Query 371 GACAACTCAGCAAGTTGAAACGCTTTCTTACCACTCTGCAACAGTTTGGCAATGACATCTCCCCTGAGATTGGG 444
|.||.||||||||||||||||||||.||.|||||||||||.||||||||||||||.|||||.||||||||.||.
Sbjct 314 GGCAGCTCAGCAAGTTGAAACGCTTCCTCACCACTCTGCAGCAGTTTGGCAATGATATCTCACCTGAGATCGGC 387
Query 445 GAGAAGGTGCGGACTCTTGTTCTTGCACTGGTGAACTCAACAGTGACAATTGAGGAATTCCACTGTAAGCTCCA 518
||||||||.||||||||.|||||.||..||||||||||||||||.||||||||.||||||||.||.||||||||
Sbjct 388 GAGAAGGTTCGGACTCTCGTTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAGAATTCCATTGCAAGCTCCA 461
Query 519 AGAAGCCACAAACTTTCCCCTTCGTCCTTTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCTGCTGCAGCGGG 592
.||.||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 462 GGAGGCCACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTTCTCAAG------------------------- 510
Query 593 AACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTC 666
Sbjct 511 -------------------------------------------------------------------------- 510
Query 667 AACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGGAAGAGGCCCAG 740
Sbjct 511 -------------------------------------------------------------------------- 510
Query 741 TCCAGAGAGGAGAGAAGAGAATAGTTTTGATAGAGACACAATTGCTCCTGAGCCTCCTGCCAAGAGAGTATGTA 814
Sbjct 511 -------------------------------------------------------------------------- 510
Query 815 CCATCAGCCCTGCTCCTCGGCACAGTCCTGCTCTCACTGTGCCCCTCATGAATCCTGGGGGCCAATTCCATCCT 888
Sbjct 511 -------------------------------------------------------------------------- 510
Query 889 ACCCCTCCACCTCTTCAGCATTACACCTTAGAGGATATTGCAACTTCTCACCTGTATCGGGAACCCAACAAGAT 962
Sbjct 511 -------------------------------------------------------------------------- 510
Query 963 GCTAGAGCATCGAGAAGTTCGTGATAGACACCACAGTCTTGGTCTAAATGGAGGCTATCAAGATGAGTTGGTAG 1036
Sbjct 511 -------------------------------------------------------------------------- 510
Query 1037 ATCATCGTTTGACAGAAAGGGAATGGGCTGATGAATGGAAACATCTTGACCATGCGCTGAATTGCATTATGGAA 1110
||.||||||||||||||||||
Sbjct 511 -----------------------------------------------------GCACTGAATTGCATTATGGAA 531
Query 1111 ATGGTAGAGAAAACAAGGCGCTCTATGGCAGTTCTGCGGCGCTGTCAGGAATCAGATCGTGAAGAACTCAACTA 1184
||||||||||||||.||||||||.||||||||||||.||||||||||||||||.||.|||||||||||||||||
Sbjct 532 ATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAACTCAACTA 605
Query 1185 CTGGAAAAGACGGTACAATGAAAACACAGAGCTGAGGAAAACGGGGACCGAGTTGGTCTCCAGGCAGCACAGCC 1258
.||||||.|.||||..||||||||.||||||.||||||||||.|||||.|||||||||||.|||||||||||||
Sbjct 606 TTGGAAACGGCGGTTTAATGAAAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCC 679
Query 1259 CTGGGAGTGCAGATTCTCTCAGCAATGATTCTCAGAGAGAGTTCAACAGCAGGCCAGGTACAGGATACGTACCT 1332
||||||||.||||||||||||||||.|||||||||.|.||.||.|.|||.||.||||..||||||||.||.|||
Sbjct 680 CTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCT 753
Query 1333 GTGGAGTTTTGGAAAAAAACAGAAGAAGCTGTGAATAAGGTGAAAATTCAGGCCATGTCAGAAGTACAGAAGGC 1406
||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 754 GTGGAGTTTTGGAAGAAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGC 827
Query 1407 CGTCGCTGAGGCAGAGCAGAAAGCCTTTGAAGTGATTGCAACAGAGAGAGCACGAATGGAGCAAACCATAGCGG 1480
.||.||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||.||||||||||
Sbjct 828 TGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGG 901
Query 1481 ATGTCAAGCGGCAGGCCGCAGAGGATGCTTTCCTCGTCATCAATGAGCAAGAGGAGTCCACGGAGAACTGCTGG 1554
|||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||
Sbjct 902 ATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGAGAACTGCTGG 975
Query 1555 AACTGTGGCCGCAAAGCCAGCGAGACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCTTTCTGCCAGCA 1628
|||||||||||.||||||||.|||||.||||||||||||||.||.||.||.|||||.|||||.|||||||||||
Sbjct 976 AACTGTGGCCGAAAAGCCAGTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACTGCGGCTCCTTCTGCCAGCA 1049
Query 1629 CAAGGACTGGGAGCGGCACCACCGCCTCTGTGGTCAGAACCTGCATGGCCAGAGCCCCCACGGCCAGGGCCGGC 1702
.||||||||||||||||||||||||||||||||.||||..||.||||||||.||.||||||.|||||.||.|||
Sbjct 1050 TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCAGAGCAGGC 1123
Query 1703 CGCTGCTTCCTGTAGGCAGGGGCTCCTCTGCCAGGTCCGCCGACTGCAGCGTGCCCAGCCCAGCCCTCGACAAG 1776
|.|||||.||||.|||..|||| |||.||||||||.||.||||||||.|||||||||||||||||.||||||
Sbjct 1124 CACTGCTCCCTGGAGGGCGGGG---CTCAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACAAG 1194
Query 1777 ACCTCGGCAACCACATCGCGTTCCTCAACACCTGCTTCTGTGACAGCTATCGACACCAACGGACTC 1842
|||||.||.|||||.||.||.||||||||||||||.|||||||||||.||.||..|||||||.|||
Sbjct 1195 ACCTCAGCTACCACCTCACGGTCCTCAACACCTGCCTCTGTGACAGCCATTGATGCCAACGGGCTC 1260
