Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11377
- Subject:
- XR_001737549.2
- Aligned Length:
- 5866
- Identities:
- 1001
- Gaps:
- 4849
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCCAGCGCGCCTCCTTCTTGGCTTCTCACCTATTCGCACAGTGAAGCCGCCCTCTTGGAAGCTGGCAGGGTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTACCGTCGAACTGACAACATCCGGGTCCTGTGACTCGGCTTCACTTGCGTTTAGATAACAGTGACCGCGGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTTTACTGAGGGCGTTTCCTCCCACAGCTCCTGGCTGGCTTTTCTAGGAGCGAGCAAGGGAAAATTGCCGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTGCGTGGGGCAGATACTTCGTGCTCTCTCGCCGAGCCCGCCTGCGTATCTTGGAAACGCGCGGCGCTTCCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCTACTCCCTTCCGCCTTGGCCGCCCTCATGCTTTAGTCCTGCTCTCGGATTGTATCTGAGCCCTGCCCTTAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGGGTAGCCCCAGGCTTTGCCAATTACTTTCCCATCACTGAATCCAAAAGACAGGAGTTGGGAAAGCCAGCTAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTCCAGATGTCATAAATTGAGATTGGAGAAAGGAGCCTAAGTGGGGCTGGGCGGGTCTGAGAGCTCCCGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACCAAAACAAAAAAGAATAGGATGCCAAGGCCGCCGGCATTGGTGGTGCGGAGGGGAGTGTCGGGGTGTGTAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCCACCTCATCCCAGATGGGGGAGTGGAGGTCCTCTGTGGGTGACCCTGACATCCTCCAGGCTTCCCGAACCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACAGAATCACAGACCCAGGAAGCGCCCTTAGAGATGCCTCACACCCCACTTCCGTCTTGCGTCAGCCTCTTTTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTAACGTCTTTCTGACCCTGCTATAGCCCTCCTGGGTAATGGCCAACAGCACGGAAATGTAGTAGCACCAGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTCTGATCACAATTCTGTATGGACAAAGATTCTTCCAGCCTTAGAGGCTAGTTCCTGTTTTCTCCCTCTGCCTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAAGCCCAACTCCAGCTGGGCCACCCACCCGTAGAGTTTGTACAACTCTCCAACTCTGAGCCTGGAAAGAGGCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTCCCCAGATATCCCCTAGACAGGATCCCAGGGACACAGCCCACCAGCAGCGCAGCAGGGTGAGGCAGACAGAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGGAAGCAGAGATGGTGGAATTCTTCACTGCAGAGAAAGAGGGGAAAGCCAGACTTCTGGCCTGGGAATTGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTAATGGGAACTGTACCAAAGGGTGGGGCCAGATCCTTAGCTGTGGGAACTGACCAGGACCTGGGCTAGACAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCAGCTGCCACAGAGCCAGGGCAGAGGTTTGGTCCCTCTGTTGTCCTCATTCCTTGCTCTTTCCCTGGGCCTTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTCTATTGTTGAAACACAGCAAATGTGGCCATGGTGGTGGGGGATGGGAAGGACTGCATTTATTTGCCTTGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCAGCCTGGGAGAAGTCAGGATAGACTTTGGGCTGCTTGGCCCTGGAGGCAGCTTGAGCTGGGACTGGGGTGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGGCTCCTGAGGGGCTGCCTAGGACACTGCAGCTTTTGTGCCTTCTCCCTGCTGCCAACACCCCCACACACACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTGCAGCCACTCTAAAGCCCTTTGTCTTTCATTGCTTAGTCACCCCCTTTGTCCTCATCTCAAATAGGGGAGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGAAAGGGGCAGTAGAGTTCTCTGGTGATAGCTCCTCTTGCCCCTGCCCCTTCTGGTCTCCCACCCTTTGTCCG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCCTCTAGTCCCAGCCCCGTTGGCTTAGAACCAGGGTCAGGCAAGTGGTGGGTCAAGAGGTGGGTCTGGCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCACAAGGGGGTGGGTGATCCAGGAAGTGATAGGCACCAGGGCAGGTATTACCGACCTGAGCAGGAAGGGAGGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGAAAGGAAGTATTCTGACGGATATGATATGCGGGGGACAGGAGGTGACAAAGCAGAGTGAATAGGGGAATAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGCAAGAGGAGGTGGTCCACTTCTGGGAAAGGAAAGAGACTGCTGACTGCACTCTCCTTCCTGGGGATTTCCTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGGAAACAAGCAGCCAGAGGATGGGGTGAGCAGAAATTGCCCCTACTTCTGAACCCTTCCTTGCCTTGAGAGTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CATACCCAAGACCTCTTTTCCGAGTTCCCTCCTATCCAAAGCCAAAGGAATAATTTGCTTCCTTTCCCTAACAC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CACCTCTTCCTCCCCAGCCACTTTCCCCACCCCAGGCAATGGATTTCTCCCAGTACCCTAATTTCCCTATATGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACAATGCTGTCTCCACCCTCTCCCTGCCCCAGGGAGAATTAAAAAGAAAAGATGACTAGATATTCCAGGAACCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGGGTTCTCAGAGCAAGGTGGGGTGGATGGTGGGAGCCAGGTGGGGATTCTCCCAGATTGATACTGGGTGAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTGGGTTCCTGAGAGCAAGTCTTGCCTATGCTGGGGGCTGGCTGACTTGAGGCTGGGGGAGGGTTTAGGGCAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGGGAGTGGGTAGGAGCAGGGCCAAAAGCCTGGGGGAAGCTACTGGGAGCTGGGCCAGGGAAATGGGGAGTCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAAGTGGGGAGGGGGAACCCTGGGGGGAAATGGAGGCGGAATGGCTGTTCTGGGCTTTGGAGGGGGTGGGTAGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGTAACTCAGGAAGGGGGATCCTGAGGGAGAGAAGGGACGTTAGAAAAGAGGAGGTGCCACCCTGGATCCGCCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTATAAAAGGAAAAGTCGTTAACCCCTCCTGCCTTGTCATCTGCCGCCTCTGTTATGTTCATTCCAAGCAGGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCATCCTACCTTTGGGCAGTCAACTCCCTGATCACTGTCTCCTTGCCTCCCCCAATGTTCTGCCTTTTTTACTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTCCCAGCTGCTCAGTTCTATCCTGAGCCATGTCAAGCTACCTCTTTTATTTGTTCTTCCCTCTTGATGCCTCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTACCTGTTCCCTACCCTCTTTTCTCAGGCAGCTCACTCAGTCCCCTCAGCCCTGGAAACCAGCCACTAGGGCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAAGGGCAGCATGAGGGAGCCTTGAGAAAAGAGAAGCCATGGTAGGTTAGACTATAAGAGCAGGAATTCTCCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGACCGTGATCCTATCTGTGCATGCCGGCCAGGCCCTTTCCCTCACTCTCTGCCTCTCCTGGGGCTCTGTCCCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCAAAAAGGGAAAGAGACAGCTGAGGGCTGATTGTGGGGTTTGGGAAAAGGCTATGTCATCAGCTGGCCCAGTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCTATTATCCATTCGGCTGCTAGAGATTCCCCTCCCCTGGGCAAGTCCCATTTTTTTGGGAAGCGATGATACAC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CCATCTGAGTCCCACCGACAGAGCTCAGCTGAGTGGCTTAGAGATCAGCCAATCAATCGCAGAGGCTCACCATG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTTAAAAGAGCTGGCGCGGAGAGAGGCTGGGGAGAACCCACAGGGAGACCCACAGACACATATGCACGAGAGAG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 ACAGAGGAGGAAAGAGACAGAGACAAAGGCACAGCGGAAGAAGGCAGAGACAGGGCAGGCACAGAAGCGGCCCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GACAGAGTCCTACAGAGGGAGAGGCCAGAGAAGCTGCAGAAGACACAGGCAGGGAGAGACAAAGATCCAGGAAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GGAGGGCTCAGGAGGAGAGTTTGGAGAAGCCAGACCCCTGGGCACCTCTCCCAAGCCCAAGGACTAAGTTTTCT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCATTTCCTTTAACGGTCCTCAGCCCTTCTGAAAACTTTGCCTCTGACCTTGGCAGGAGTCCAAGCCCCCAGGC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TACAGAGAGGAGCTTTCCAAAGCTAGGGTGTGGAGGACTTGGTGCCCTAGACGGCCTCAGTCCCTCCCAGCTGC 3700
Query 1 ------------ATGTCCCAGACAGGCTCGCATCCCGGGAGGGGCTTGGCAGGGCGCTGGCTGTGGGGAGCCCA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 AGTACCAGTGCCATGTCCCAGACAGGCTCGCATCCCGGGAGGGGCTTGGCAGGGCGCTGGCTGTGGGGAGCCCA 3774
Query 63 ACCCTGCCTCCTGCTCCCCATTGTGCCGCTCTCCTGGCTGGTGTGGCTGCTTCTGCTACTGCTGGCCTCTCTCC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 ACCCTGCCTCCTGCTCCCCATTGTGCCGCTCTCCTGGCTGGTGTGGCTGCTTCTGCTACTGCTGGCCTCTCTCC 3848
Query 137 TGCCCTCAGCCCGGCTGGCCAGCCCCCTCCCCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAACGGCAGC 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 TGCCCTCAGCCCGGCTGGCCAGCCCCCTCCCCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAACGGCAGC 3922
Query 211 GTCCTGCCTGGCTCGGGCGCCCCTGCCAGGCTGTTGTGCCGCTTGCAGGCCTTTGGGGAGACGCTGCTACTAGA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GTCCTGCCTGGCTCGGGCGCCCCTGCCAGGCTGTTGTGCCGCTTGCAGGCCTTTGGGGAGACGCTGCTACTAGA 3996
Query 285 GCTGGAGCAGGACTCCGGTGTGCAGGTCGAGGGGCTGACAGTGCAGTACCTGGGCCAGGCGCCTGAGCTGCTGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 GCTGGAGCAGGACTCCGGTGTGCAGGTCGAGGGGCTGACAGTGCAGTACCTGGGCCAGGCGCCTGAGCTGCTGG 4070
Query 359 GTGGAGCAGAGCCTGGCACCTACCTGACTGGCACCATCAATGGAGATCCGGAGTCAGTGGCATCTCTGCACTGG 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 4071 GTGGAGCAGAGCCTGGCACCTACCTGACTGGCACCATCAATGGAGATCCGGAGTCGGTGGCATCTCTGCACTGG 4144
Query 433 GATGGGGGAGCCCTGTTAGGCGTGTTACAATATCGGGGGGCTGAACTCCACCTCCAGCCCCTGGAGGGAGGCAC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 GATGGGGGAGCCCTGTTAGGCGTGTTACAATATCGGGGGGCTGAACTCCACCTCCAGCCCCTGGAGGGAGGCAC 4218
Query 507 CCCTAACTCTGCTGGGGGACCTGGGGCTCACATCCTACGCCGGAAGAGTCCTGCCAGCGGTCAAGGTCCCATGT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 CCCTAACTCTGCTGGGGGACCTGGGGCTCACATCCTACGCCGGAAGAGTCCTGCCAGCGGTCAAGGTCCCATGT 4292
Query 581 GCAACGTCAAGGCTCCTCTTGGAAGCCCCAGCCCCAGACCCCGAAGAGCCAAGCGCTTTGCTTCACTGAGTAGA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 GCAACGTCAAGGCTCCTCTTGGAAGCCCCAGCCCCAGACCCCGAAGAGCCAAGCGCTTTGCTTCACTGAGTAGA 4366
Query 655 TTTGTGGAGACACTGGTGGTGGCAGATGACAAGATGGCCGCATTCCACGGTGCGGGGCTAAAGCGCTACCTGCT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 TTTGTGGAGACACTGGTGGTGGCAGATGACAAGATGGCCGCATTCCACGGTGCGGGGCTAAAGCGCTACCTGCT 4440
Query 729 AACAGTGATGGCAGCAGCAGCCAAGGCCTTCAAGCACCCAAGCATCCGCAATCCTGTCAGCTTGGTGGTGACTC 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 AACAGTGATGGCAGCAGCAGCCAAGGCCTTCAAGCACCCAAGCATCCGCAATCCTGTCAGCTTGGTGGTGACTC 4514
Query 803 GGCTAGTGATCCTGGGGTCAGGCGAGGAGGGGCCCCAAGTGGGGCCCAGTGCTGCCCAGACCCTGCGCAGCTTC 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 GGCTAGTGATCCTGGGGTCAGGCGAGGAGGGGCCCCAAGTGGGGCCCAGTGCTGCCCAGACCCTGCGCAGCTTC 4588
Query 877 TGTGCCTGGCAGCGGGGCCTCAACACCCCTGAGGACTCGGACCCTGACCACTTTGACACAGCCATTCTGTTTAC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 TGTGCCTGGCAGCGGGGCCTCAACACCCCTGAGGACTCGGACCCTGACCACTTTGACACAGCCATTCTGTTTAC 4662
Query 951 CCGTCAGG----------------------------------------TGA----------------------- 961
|||||||| |||
Sbjct 4663 CCGTCAGGACCTGTGTGGAGTCTCCACTTGCGACACGCTGGGTATGGCTGATGTGGGCACCGTCTGTGACCCGG 4736
Query 962 ------------------------------GGCCCCAGTCAG----CACCGCAGGCCATGCACT-GCACAATTC 1000
|||.|||||||| |||.||.|..||||.||| |..||..||
Sbjct 4737 CTCGGAGCTGTGCCATTGTGGAGGATGATGGGCTCCAGTCAGCCTTCACTGCTGCTCATGAACTGGGTCATGTC 4810
Query 1001 T--AAGAAGCGCCACTACA------------------------------------------------------- 1017
| ||.|.||.|||..|||
Sbjct 4811 TTCAACATGCTCCATGACAACTCCAAGCCATGCATCAGTTTGAATGGGCCTTTGAGCACCTCTCGCCATGTCAT 4884
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 4885 GGCCCCTGTGATGGCTCATGTGGATCCTGAGGAGCCCTGGTCCCCCTGCAGTGCCCGCTTCATCACTGACTTCC 4958
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 4959 TGGACAATGGCTATGGGCACTGTCTCTTAGACAAACCAGAGGCTCCATTGCATCTGCCTGTGACTTTCCCTGGC 5032
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5033 AAGGACTATGATGCTGACCGCCAGTGCCAGCTGACCTTCGGGCCCGACTCACGCCATTGTCCACAGCTGCCGCC 5106
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5107 GCCCTGTGCTGCCCTCTGGTGCTCTGGCCACCTCAATGGCCATGCCATGTGCCAGACCAAACACTCGCCCTGGG 5180
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5181 CCGATGGCACACCCTGCGGGCCCGCACAGGCCTGCATGGGTGGTCGCTGCCTCCACATGGACCAGCTCCAGGAC 5254
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5255 TTCAATATTCCACAGGCTGGTGGCTGGGGTCCTTGGGGACCATGGGGTGACTGCTCTCGGACCTGTGGGGGTGG 5328
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5329 TGTCCAGTTCTCCTCCCGAGACTGCACGAGGCCTGTCCCCCGGAATGGTGGCAAGTACTGTGAGGGCCGCCGTA 5402
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5403 CCCGCTTCCGCTCCTGCAACACTGAGGACTGCCCAACTGGCTCAGGTGGTAGATGGGACCCCCTGTTCCCCGGA 5476
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5477 CAGCTCCTCGGTCTGTGTCCAGGGCCGATGCATCCATGCTGGCTGTGATCGCATCATTGGCTCCAAGAAGAAGT 5550
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5551 TTGACAAGTGCATGGTGTGCGGAGGGGACGGTTCTGGTTGCAGCAAGCAGTCAGGCTCCTTCAGGAAATTCAGA 5624
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5625 TGTGGTACTGCCTGGGGCAGTCAGCTTGCGCTACAGCGGGGCCACTGCAGCCTCAGAGACACTGTCAGGCCATG 5698
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5699 GGCCACTGGCCCAGCCTTTGACACTGCAAGTCCTAGTGGCTGGCAACCCCCAGGACACACGCCTCCGATACAGC 5772
Query 1018 -------------------------------------------------------------------------- 1017
Sbjct 5773 TTCTTCGTGCCCCGGCCGACCCCTTCAACGCCACGCCCCACTCCCCAGGACTGGCTGCACCGAAGAGCACAGAT 5846
Query 1018 -------------------- 1017
Sbjct 5847 TCTGGAGATCCTTCGGCGGC 5866
