Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11394
- Subject:
- XR_001749742.2
- Aligned Length:
- 3856
- Identities:
- 437
- Gaps:
- 3411
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGATCTCGGGTTTGTCGGGCTGAAATGTGGCGGGTCTCGGAAGGTTCCGACCTCAGTAAAGAGAGCTAACG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTATTCTTCTTTTTCTTAGCGTGTTGCTTTGTCGCCCACGCTGGTTGCAGTGGTGCGATCTCAGTTCACTGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTTCGCCTCCCAGGTTCAAGCGATTATCCTGCCTCAGCTTCCCGAGCAGCTAGGACTACAGGTGTGTGCCAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACGCTCAGCTAATTTTTTTGGTATTTTTAGTAGAGATGGGGTTTTCCCATGTTGGCCAGGCTGGTCTCGAACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGACCTCAGATGATCTGCCCGCCTCGGCCTCCCAAAGTGGTAGGATTACAGGCGTGAGCCACTGTGCTCGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATTTTGGTATGTTTCTTATTTAACTTTCTTTTTAAAAAATACTCTATGTGCTTTTTTTTTTTTACATGTATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTTATATTGTAGAATATTTTTTAAATGTAATTGAGATTCTATTTTGTTCCTTGCCTTTCTTGCTTAATATAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGTCACCATTTAATATAACTGTAGAGCTTTTCACCAGCCCTACTTTCTTGGTCTATTAATACTTGAACTTTTCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCCTTTAGGATCTCAGCTAAACGGGAAGCATTTTTGAAAAGTGATTGCACAATTGAGAGTGAAAATTACTGAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTGAACAGGCAACTTACATTCTAATACCAGCTCTGTCTCCATCCAGCCGACTGAATAGTCGTGATTAAGTTAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTGACTTCCTTGGATATCTAGATCCTTAAAGTTAAAGAATTATACAAGATAATAATATTTTCTTCAAACTTTAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAATGACTTTATGAACCGCCTTAAGTTTGTATGTTTTCATAGCTTTCAAGAGCTTGTTTACACACTCAATTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGATTCTAGATACTTTCTAGAAAATAACTGACTTAACTCATTCAATTGATATATTTGTTAGTTGTACTCCTACT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATATGCTTCAGTTAATTATATATGTTGAACAGGTAGGAAGCAGTGCTGTTTTTATTTATTTTAATATGTTATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CATACATTTGAAGAATTATGTTCTTTCTGTAGGCAGCTGAATTTTTTTTTTTTTTGAGACGAAGTCTTGGTATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTCCCCCTTGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGCAATTCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGCCTCAGACTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCGGATAATTTTTGTATTTTTAGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAGACAGTGTTTCACTATGTTGGCTGGGCTGGTCTCGAACTCCTGCCCTCAGGTGATCCGCCTGCCTCAGCCTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCAAAGTGCTGGGATTACTGGCGTGAGCCACTGCTGCCAGCCGGCAGTTGAATTTTAAGACTGTGGAGCTGGCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAGGCAGTAGATGAAACAAGATTTCTTGATGTTCCTTCCAGGTTTATTATGCATGTATCTTTAGAGATGATTTT 1480
Query 1 --------------------------------------ATGAATCGTCACCTGTGTGTTTGGCTTTTTAGACAT 36
||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTTTTAAAGACTGTGTTTATTGTATTTCAGATGCTGAGATGAATCGTCACCTGTGTGTTTGGCTTTTTAGACAT 1554
Query 37 CCATCTCTTAATGGTTACCTCCAGTGTCACATCCAGCTCCATTCTCATCAATTTAGACAGATACATCTTGATAC 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCATCTCTTAATGGTTACCTCCAGTGTCACATCCAGCTCCATTCTCATCAATTTAGACAGATACATCTTGATAC 1628
Query 111 AAGGCTGCAAGTTTTTAGACAAAACAGGAATTGCATTCTTCATCTGTTAAGTAAGAATTGGTCCAGGAGATATT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAGGCTGCAAGTTTTTAGACAAAACAGGAATTGCATTCTTCATCTGTTAAGTAAGAATTGGTCCAGGAGATATT 1702
Query 185 GCCATCAAGACACCAAGATGCTCTGGAAGCATAAAGCACTACAGAAATATATGGAGAACCTGAGTAAGGAGTAC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GCCATCAAGACACCAAGATGCTCTGGAAGCATAAAGCACTACAGAAATATATGGAGAACCTGAGTAAGGAGTAC 1776
Query 259 CAAACACTTGAGCAATGTCTGCAGCATATCCCTGTGAATGAGGAAAACCGAAGGTCCTTGAACAGAAGGCATGC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CAAACACTTGAGCAATGTCTGCAGCATATCCCTGTGAATGAGGAAAACCGAAGGTCCTTGAACAGAAGGCATGC 1850
Query 333 TGAGTTGGCACCTCTTGCAGCCATTTACCAAGAAATTCAGGAGACTGAACAAGCAATTGAAGAATTAGAATCAA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGAGTTGGCACCTCTTGCAGCCATTTACCAAGAAATTCAGGAGACTGAACAAGCAATTGAAGAATTAGAATCAA 1924
Query 407 TGTGTAAAA--------AGACA----------GAGT--------CTTGCTCTGTGGCCCAGGCTGGAATGCAG- 453
||||||||| |.||| .||| |||||.|| ||..|.||.|||.
Sbjct 1925 TGTGTAAAAGCCTAAATAAACAAGATGAAAAGCAGTTACAAGAACTTGCACT--------GGAAGAAAGGCAAA 1990
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1991 CCATTGATCAAAAAATCAACATGTTGTACAATGAGCTTTTCCAGAGCCTTGTGCCAAAGGAGAAATATGACAAA 2064
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2065 AATGATGTTATTTTAGAGGTGACAGCTGGAAGGACTACTGGAGGTGACATCTGCCAACAATTTACCCGAGAAAT 2138
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2139 ATTTGACATGTACCAGAATTATTCGTGCTATAAACACTGGCAATTTGAACTTCTGAATTATACACCAGCAGATT 2212
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2213 ATGGTGGACTACATCATGCAGCCGCCCGAATTTCCGGTGACGGTGTCTATAAGCATTTGAAGTATGAGGGTGGG 2286
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2287 ATTCACCGAGTTCAGCGCATCCCCGAGGTGGGCCTGTCCTCAAGGATGCAGCGCATTCACACAGGAACGATGTC 2360
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2361 GGTTATTGTCCTTCCTCAGCCAGATGAGGTGGATGTGAAATTGGACCCCAAGGATTTGCGAATAGATACATTTC 2434
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2435 GAGCCAAAGGAGCAGGAGGGCAGCATGTTAATAAAACTGATAGTGCCGTCAGACTTGTCCACATCCCCACAGGC 2508
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2509 ATAATCTCGGCTGACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG 2582
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2583 GACTACAGGCACATGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGAGATGGGGTTTCACTGTGTTATCCAG 2656
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2657 TATGGTCGTGATCTCCTGACCTTGTGATCCACCCGCCTTGCCTTCCCAAAATCCTCGGATTACAGGTGTGAGCC 2730
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2731 ACTGCGCCCAGCCATTATAAAGGGCTAGTAGTAGAATGCCAACAAGAAAGATCACAGATAAAAAATAAAGAAAT 2804
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2805 AGCCTTTCGTGTGTTGAGAGCTAGACTCTACCAGCAGATTATTGAGAAAGACAAGCGTCAGCAACAAAGTGCTA 2878
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2879 GAAAACTGCAGGTGGGAACAAGAGCCCAGTCAGAGCGAATTCGGACATATAATTTCACCCAGGATAGAGTCAGT 2952
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2953 GACCACAGGATAGCATATGAAGTTCGTGATATTAAGGAATTTTTATGTGGTGGGAAGGGCCTGGATCAGCTAAT 3026
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3027 TCAGAGACTGCTTCAATCAGCAGATGAAGAAGCCATTGCTGAACTTTTGGATGAACACCTTAAATCAGCAAAAT 3100
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3101 AAATACTAACTTATTATTATTTATGATTATATAAATGAAATGGACCTATATCAAGAGGCAGACTGAAGCTTGGA 3174
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3175 AATCATTATGAATATTTGTAAATTACAGCTTTAAGAACACATTACACATAAATATATGTTTTGTAATTAATCGA 3248
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3249 AGTCACATTTCCTGACCTAAGAATTTATTTTAGGTTTCCTGTAAAGTACAATCCAACTCATCAAGTAGAAAATA 3322
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3323 AGCATGCATCATTGAAAAGAGAAAGTATTGAGAATTGATTGTGTCATTTAGGACAAGTCACTTGTTCTCTTTAT 3396
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3397 ATGCCTTTTTTCCCCAGCCATCTATGAATTAATTTAAATATATTTTTAATCTACTACTTCAGGAAAATATGGTA 3470
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3471 AAATTTAGTAAAATATGAATTTTAGACTTCCTTATAAACCTTTTATTTAAATACAAAGTACCTTGGCCTATAGT 3544
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3545 GGATGCTTATGCCTGTAATCCCAGTGCTTTGAAGGGCCAAAGGGGGAAGATCTCTTGAGGTAAGAATTTGAGAC 3618
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3619 CAGCCTGGGCAAAATAGACCCCATGTCTACAAAAAAACTCAAAACATAAAGAAAAACCATAATACTGTTAATCA 3692
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3693 TGTTAAAGTTAAGACTTAGACTGCAACTTTTAAATAAAAATTATGAAGAATATGAGTCATTCAATAACAATGAG 3766
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3767 CATCTGGGTACAGACAGTAAAGCCCTTTGATTGCTGTATGAATTCCACACTATATAAACAATAAGCTGATATTT 3840
Query 454 -------- 453
Sbjct 3841 TAAATAGA 3848
