Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11428
- Subject:
- NM_001277982.2
- Aligned Length:
- 2718
- Identities:
- 1515
- Gaps:
- 1047
Alignment
Query 1 ATGTCGGGACGAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTTACAGGCTCTGCTGTAGCAAGAGC 74
||||||||.|.|||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||
Sbjct 1 ATGTCGGGCCAAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTGACTGGCTCTGCTGTAGCAAGAGC 74
Query 75 GGTCTGCAAAGCCACTACTCATGAAGTAATGGGCCCCAAGAAAAAGCACCTGGACTATTTGATCCAGGCTACCA 148
.||||||||||||||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 75 AGTCTGCAAAGCCACCACTCATGAGGTGATGGGCCCCAAGAAGAAGCACCTGGACTATTTGATCCAGGCTACCA 148
Query 149 ACGAGACCAATGTTAATATTCCTCAGATGGCCGACACTCTCTTTGAGCGGGCAACAAACAGTAGCTGGGTGGTT 222
|.|||||||||||.|||||.|||||||||||||||||.||||||||||||||.||||||||||||||||||||.
Sbjct 149 ATGAGACCAATGTCAATATCCCTCAGATGGCCGACACCCTCTTTGAGCGGGCGACAAACAGTAGCTGGGTGGTG 222
Query 223 GTGTTTAAGGCTTTAGTGACAACACATCATCTCATGGTGCATGGAAATGAGAGATTTATTCAATATTTGGCTTC 296
||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 223 GTATTTAAAGCTTTAGTGACCACACACCATCTCATGGTGCATGGAAATGAGAGATTTATTCAGTATTTGGCCTC 296
Query 297 TAGAAATACACTATTCAATCTCAGCAATTTTTTGGACAAAAGTGGATCCCATGGTTATGATATGTCTACCTTCA 370
|||.|||||.|||||||||||||||||.|||.|.||.||||||||||||||.|||||||||||||||||.||||
Sbjct 297 TAGGAATACGCTATTCAATCTCAGCAACTTTCTAGATAAAAGTGGATCCCACGGTTATGATATGTCTACGTTCA 370
Query 371 TAAGGCGCTATAGTAGATATTTGAATGAAAAGGCTTTTTCTTACAGACAGATGGCCTTTGATTTTGCCAGGGTG 444
||.||||.||.||||||||.|||||||||||||||||.||.||||||||||||||.|||||.||||||||.|||
Sbjct 371 TACGGCGTTACAGTAGATACTTGAATGAAAAGGCTTTCTCCTACAGACAGATGGCATTTGACTTTGCCAGAGTG 444
Query 445 AAGAAAGGGGCCGATGGTGTAATGAGGACAATGGCTCCCGAAAAGCTGCTAAAGAGTATGCCAATACTACAGGG 518
|||||||||||.||.|||||.||||||||.||||.|||.||||||||.||.||||||||||||||.||.|||||
Sbjct 445 AAGAAAGGGGCTGACGGTGTCATGAGGACGATGGTTCCTGAAAAGCTCCTGAAGAGTATGCCAATCCTGCAGGG 518
Query 519 ACAAATTGATGCACTGCTTGAATTTGATGTGCATCCAAATGAACTAACAAATGGTGTCATAAATGCAGCATTTA 592
.||.||.|||||||||||.||.||||||||||||||||||||||||||.|||||||||||||||||.|||||||
Sbjct 519 GCAGATCGATGCACTGCTGGAGTTTGATGTGCATCCAAATGAACTAACCAATGGTGTCATAAATGCTGCATTTA 592
Query 593 TGCTTCTTTTCAAAGATCTTATCAAACTTTTTGCTTGCTACAATGATGGTGTTATTAACTTACTCGAAAAGTTT 666
||||||||||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||
Sbjct 593 TGCTTCTTTTCAAAGATCTTATCAAACTGTTTGCTTGCTACAATGACGGCGTCATTAACTTACTTGAAAAATTT 666
Query 667 TTTGAAATGAAGAAAGGACAATGTAAAGATGCTCTAGAAATTTACAAACGATTTCTAACTAGAATGACACGAGT 740
||.||.|||||||||||.|||||.|||||.||.||||||||||||||.||||||||||||||||||||..|.||
Sbjct 667 TTCGAGATGAAGAAAGGTCAATGCAAAGACGCGCTAGAAATTTACAAGCGATTTCTAACTAGAATGACGAGGGT 740
Query 741 GTCTGAATTTCTCAAGGTTG------------------------------------------CAGAGGCTCCCA 772
|||||||||.||||||||.| ||.|||||||||
Sbjct 741 GTCTGAATTCCTCAAGGTCGCCGAGCAAGTTGGTATTGATAAAGGTGACATTCCCGACCTCACACAGGCTCCCA 814
Query 773 GCAGTCTTATGGAGACGCTTGAACAGCATCTAAATACATTAGAAGGAAAGAAACCTGGAAACAA------ATCT 840
||||||||||||||||.||||||||.|||||||||||..||||||||||||||||||||||||| ||||
Sbjct 815 GCAGTCTTATGGAGACCCTTGAACAACATCTAAATACCCTAGAAGGAAAGAAACCTGGAAACAATGAAGGATCT 888
Query 841 GGTGCTCCCTCTCCATTAAGTAAGTCTTCTCCAGCCACAACTGTTACGTCTCCTAATTCTACACCAGCTAAAAC 914
|||||||||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 889 GGTGCTCCCTCTCCACTAAGTAAGTCTTCTCCAGCCACAACTGTTACATCTCCTAATTCTACACCAGCTAAAAC 962
Query 915 TATTGACACATCCCCACCGGTTGATTTATTTGCAACTGCATCTGCGGCTGTCCCAGTCAGCACTTCTAAACCAT 988
|||.|||||||||||.||.|||||..||||||||||.|||||.|||||||.||||||||||.||.||||.||||
Sbjct 963 TATCGACACATCCCCGCCAGTTGACATATTTGCAACAGCATCCGCGGCTGCCCCAGTCAGCTCTGCTAAGCCAT 1036
Query 989 CTAGTGATCTCCTGGACCTCCAGCCAGACTTTTCCTCTGGA---------GGGGCAGCAGCA------------ 1041
|.||.||||||||.||.||.|||||.||||| ||||||| ||||||||||||
Sbjct 1037 CAAGCGATCTCCTTGATCTTCAGCCCGACTT---CTCTGGAGCAGCTGCGGGGGCAGCAGCACCTGTAGTGCCT 1107
Query 1042 ---------------------------------------------------GCCGCA----------------- 1047
||.|||
Sbjct 1108 CCTTCTGGGGGTGCGACCGCCTGGGGAGACCTTTTGGGAGAGGATTCCTTGGCTGCACTTTCCTCTGTTCCCTG 1181
Query 1048 -------------------------GCACCAG------------------------------------------ 1054
|||||||
Sbjct 1182 TGAAGCACCGATTTCAGACCCATTTGCACCAGAGCCTTCCCCTCCTACTACAACCACTGAGCCTGCTTCAGCCT 1255
Query 1055 ----------CACCAC---------------------------------------------------------- 1060
||||||
Sbjct 1256 CTGCCTCGACCACCACAGCTGTGACGGCTGTCACTACGGAAGTGGATCTCTTTGGAGATGCCTTTGCAGCTTCT 1329
Query 1061 -------------------------------------CACCACCT----------------------------- 1068
|||||.||
Sbjct 1330 CCTGGGGAGGCCCCTGCAGCATCCGAAGGGGCTACCGCACCAGCTACCCCGGCCCCAGTGGCTGCAGCTCTTGA 1403
Query 1069 ------------------------------------------------------------GCTGGA-------- 1074
||||||
Sbjct 1404 TGCATGCTCAGGAAATGACCCTTTTGCCCCATCTGAAGGTAGCGCAGAGGCTGCACCTGAGCTGGACCTCTTTG 1477
Query 1075 -------------------------------------------------------------------------- 1074
Sbjct 1478 CAATGAAGCCACCTGAGACCAGCGCTCCTGTAGTTACCCCTACAGCTAGCACAGCCCCTCCAGTTCCCGCAACT 1551
Query 1075 ---------------------------GGAGCCACTGC------------------------------------ 1085
|.|||||||||
Sbjct 1552 GCTCCTTCTCCTGCTCCCACGGCTGTGGCAGCCACTGCTGCCACCACCACCGCCGCCGCTGCAGCTACCACCAC 1625
Query 1086 -------------------------------------------------------------------------- 1085
Sbjct 1626 TGCCACCACCTCTGCTGCTGCTGCCACCACCGCCGCTGCTCCTCCTGCTCTAGATATCTTTGGTGATTTGTTTG 1699
Query 1086 -------------------------------------------------------------------------- 1085
Sbjct 1700 ATTCTGCTCCTGAAGTTGCTGCAGCACCTAAGCCAGACGCGGCTCCTAGCATAGACCTGTTTGGCACAGATGCT 1773
Query 1086 -------------------------------------------------------------------------- 1085
Sbjct 1774 TTCTCCTCCCCGCCACGAGGGGCCTCTCCGGTGCCTGAGAGTTCTCTCACTGCTGACCTCTTATCTGTGGACGC 1847
Query 1086 -----------------------------------------------------------------------ATG 1088
.||
Sbjct 1848 ATTTGCAGCGCCGTCTCCTGCATCCACTGCCTCTCCTGCAAAGGCGGAGTCCTCGGGTGTCATAGACCTTTTTG 1921
Query 1089 GGGA---------------------------------------------------------------------- 1092
||||
Sbjct 1922 GGGATGCGTTTGGAAGTGGTGCTTCTGAAACCCAGCCAGCACCACAGGCTGTTTCTAGTTCATCAGCATCGGCA 1995
Query 1093 ------------GGATTTGGGGGTTCTTTCATGGCGCCTTCCCCATCTCCAGTGACTCCAGCTCAGAATAACCT 1154
|||||||||||||||||||||||.|||||..||.|.||||||||||||||||||||||||||
Sbjct 1996 GATCTACTAGCTGGATTTGGGGGTTCTTTCATGGCCCCTTCTACAACGCCAGTGACTCCAGCTCAGAATAACCT 2069
Query 1155 GCTACAGCCCAATTTTGAGGCAGCTTTTGGGACAACGCCTTCAACTTCCAGCAGCAGCTCCTTTGATCCATCAG 1228
|||.||.||||.|||.||||||||||||||.||.||||||||.|||||.|||||||||||.|||||.|||||
Sbjct 2070 GCTGCAACCCAGTTTCGAGGCAGCTTTTGGAACGACGCCTTCGACTTCAAGCAGCAGCTCTTTTGACCCATC-- 2141
Query 1229 TGTTTGATGGTCTAGGTGATCTTTTGATGCCAACCATGGCACCAGCTGGGCAGCCTGCACCTGTCTCAATGGTA 1302
|||.||||||.||||||||||||||||||||.|.|||||||||||.||||||||||||||.
Sbjct 2142 -------------AGGCGATCTTCTGATGCCAACCATGGCACCATCCGGGCAGCCTGCCCCTGTCTCAATGGTC 2202
Query 1303 CCACCCAGTCCTGCAATGGCAGCCAGCAAAGCCCTTGGAAGTGATCTTGATTCATCTCTTGCCAGCTTAGTAGG 1376
|||||||||||||||||||||||||||||||.|||.||||||||.|||||.||.|||||.|||||.||||||||
Sbjct 2203 CCACCCAGTCCTGCAATGGCAGCCAGCAAAGGCCTCGGAAGTGACCTTGACTCGTCTCTGGCCAGTTTAGTAGG 2276
Query 1377 CAATCTTGGAATTTCTGGTACCACAACAAAAAAGGGAGATCTTCAGTGGAATGCTGGAGAGAAAAAGTTGACTG 1450
|||||||||.|||||||||||||||.||||||||||||||||.||||||||||||||.|||||||||.||||||
Sbjct 2277 CAATCTTGGGATTTCTGGTACCACATCAAAAAAGGGAGATCTCCAGTGGAATGCTGGGGAGAAAAAGCTGACTG 2350
Query 1451 GTGGAGCCAACTGGCAGCCTAAAGTAGCTCCAGCAACCTGGTCAGCAGGCGTTCCACCAAGTGCACCTTTGCAA 1524
||||||||||||||||.||.|||||..|||||||.||.||||||||.||.|||||.||
Sbjct 2351 GTGGAGCCAACTGGCAACCGAAAGTCACTCCAGCCACATGGTCAGCGGGTGTTCCCCC---------------- 2408
Query 1525 GGAGCTGTACCTCCAACCAGTTCAGTTCCTCCTGTTGCCGGGGCCCCATCGGTTGGACAACCTGGAGCAGGATT 1598
Sbjct 2409 -------------------------------------------------------------------------- 2408
Query 1599 TGGAATGCCTCCTGCTGGGACAGGCATGCCCATGATGCCTCAGCAGCCGGTCATGTTTGCACAGCCCATGATGA 1672
|||||||.|.||||||||||||.||||||||.||||||||||.|||||||||||||||||||||||||
Sbjct 2409 ------GCCTCCTTCAGGGACAGGCATGACCATGATGTCTCAGCAGCCAGTCATGTTTGCACAGCCCATGATGA 2476
Query 1673 GGCCCCCCTTTGGAGCTGCCGCTGTACCTGGCACGCAGCTTTCTCCAAGCCCTACACCTGCCAGTCAGAGTCCC 1746
||||.||||||||||||||.|||||.||.|||||.||||||||||||||||||||||||||||.||||||||||
Sbjct 2477 GGCCACCCTTTGGAGCTGCAGCTGTGCCCGGCACACAGCTTTCTCCAAGCCCTACACCTGCCACTCAGAGTCCC 2550
Query 1747 AAGAAACCTCCAGCAAAGGACCCATTAGCGGATCTTAAC--------------- 1785
||||||||||||||.||||||||.|||||||||||||||
Sbjct 2551 AAGAAACCTCCAGCCAAGGACCCGTTAGCGGATCTTAACATCAAGGATTTCTTG 2604
