Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11440
- Subject:
- NM_001145425.1
- Aligned Length:
- 1741
- Identities:
- 981
- Gaps:
- 746
Alignment
Query 1 ATGGAGGTGAATGCAGGAGGTGTGATTGCCTATATCAGTTCTTCCAGCTCAGCCTCAAGCCCTGCCTCTTGTCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CAGTGAGGGTTCTGAGAATAGTTTCCAGTCCTCCTCCTCTTCTGTTCCATCTTCTCCAAATAGCTCTAATTCTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ATACCAATGGTAATCCCAAGAATGGTGATCTCGCCAATATTGAAGGCATCTTGAAGAATGATCGAATAGATTGT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCTATGAAAACAAGCAAATCGAGTGCACCTGGGATGACAAAAAGTCATAGTGGTGTGACAAAATTTAGTGGCAT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ---ATGAAAACAAGCAAATCGAGTGCACCTGGGATGACAAAAAGTCATAGTGGTGTGACAAAATTTAGTGGCAT 71
Query 297 GGTTCTACTGTGTAAAGTCTGTGGGGATGTGGCGTCAGGATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGTTCTACTGTGTAAAGTCTGTGGGGATGTGGCGTCAGGATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTA 145
Query 371 AGGGTTTCTTTCGGAGAAGTATTCAACAAAACATCCAGTACAAGAAGTGCCTGAAGAATGAAAACTGTTCTATA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 AGGGTTTCTTTCGGAGAAGTATTCAACAAAACATCCAGTACAAGAAGTGCCTGAAGAATGAAAACTGTTCTATA 219
Query 445 ATGAGAATGAATAGGAACAGATGTCAGCAATGTCGCTTCAAAAAGTGTCTGTCTGTTGGAATGTCAAGAGATGC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ATGAGAATGAATAGGAACAGATGTCAGCAATGTCGCTTCAAAAAGTGTCTGTCTGTTGGAATGTCAAGAGATGC 293
Query 519 TGTTCGGTTTGGTCGTATTCCTAAGCGTGAAAAACAGAGGATGCTAATTGAAATGCAAAGTGCAATGAAGACCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGTTCGGTTTGGTCGTATTCCTAAGCGTGAAAAACAGAGGATGCTAATTGAAATGCAAAGTGCAATGAAGACCA 367
Query 593 TGATGAACAGCCAGTTCAGTGGTCACTTGCAAAATGACACATTAGTAGAACATCATGAACAGACAGCCTTGCCA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGATGAACAGCCAGTTCAGTGGTCACTTGCAAAATGACACATTAGTAGAACATCATGAACAGACAGCCTTGCCA 441
Query 667 GCCCAGGAACAGCTGCGACCCAAGCCCCAACTGGAGCAAGAAAACATCAAAAGCTCTTCTCCTCCATCTTCTGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GCCCAGGAACAGCTGCGACCCAAGCCCCAACTGGAGCAAGAAAACATCAAAAGCTCTTCTCCTCCATCTTCTGA 515
Query 741 TTTTGCAAAGGAAGAAGTGATTGGCATGGTGACCAGAGCTCACAAGGATACCTTTATGTATAATCAAGAGCAGC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTTTGCAAAGGAAGAAGTGATTGGCATGGTGACCAGAGCTCACAAGGATACCTTTATGTATAATCAAGAGCAGC 589
Query 815 AAGAAAACTCAGCTGAGAGCATGCAGCCCCAGAGAGGAGAACGGATTCCCAAGAACATGGAGCAATATAATTTA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AAGAAAACTCAGCTGAGAGCATGCAGCCCCAGAGAGGAGAACGGATTCCCAAGAACATGGAGCAATATAATTTA 663
Query 889 AATCATGATCATTGCGGCAATGGGCTTAGCAGCCATTTTCCCTGTAGTGAGAGCCAGCAGCATCTCAATGGACA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AATCATGATCATTGCGGCAATGGGCTTAGCAGCCATTTTCCCTGTAGTGAGAGCCAGCAGCATCTCAATGGACA 737
Query 963 GTTCAAAGGGAGGAATATAATGCATTACCCAAATGGTCATGCCATTTGTATTGCAAATGGACATTGTATGAACT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTTCAAAGGGAGGAATATAATGCATTACCCAAATGGTCATGCCATTTGTATTGCAAATGGACATTGTATGAACT 811
Query 1037 TCTCCAATGCTTATACTCAAAGAGTATGTGATAGAGTTCCGATAGATGGATTTTCTCAGAATGAGAACAAGAAT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TCTCCAATGCTTATACTCAAAGAGTATGTGATAGAGTTCCGATAGATGGATTTTCTCAGAATGAGAACAAGAAT 885
Query 1111 AGTTACCTGTGCAACACTGGAGGAAGAATGCATCT--------------GTACAGTGTTCATAT--------TC 1162
||||||||||||||||||||||||||||||||||| ||| |||.|.||||| ||
Sbjct 886 AGTTACCTGTGCAACACTGGAGGAAGAATGCATCTGGTTTGTCCAATGAGTA-AGTCTCCATATGTGGATCCTC 958
Query 1163 A--------GCCA--AAAT----------------------TTCA--CCA------AAA--------------- 1181
| |.|| |||| |||| ||| |||
Sbjct 959 ATAAATCAGGACATGAAATCTGGGAAGAATTTTCGATGAGCTTCACTCCAGCAGTGAAAGAAGTGGTGGAATTT 1032
Query 1182 --ACAGCAGTA--------------------CCACACCATTTCCAG--------TTTAAACCATGAAGTCCTT- 1224
|.||| ||| .|.||.|||..|||| ||||||...|| |..|||
Sbjct 1033 GCAAAGC-GTATTCCTGGGTTCAGAGATCTCTCTCAGCATGACCAGGTCAACCTTTTAAAGGCTG--GGACTTT 1103
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1104 TGAGGTTTTAATGGTACGGTTCGCATCATTATTTGATGCAAAGGAACGTACTGTCACCTTTTTAAGTGGAAAGA 1177
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1178 AATATAGTGTGGATGATTTACACTCAATGGGAGCAGGGGATCTGCTAAACTCTATGTTTGAATTTAGTGAGAAG 1251
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1252 CTAAATGCCCTCCAACTTAGTGATGAAGAGATGAGTTTGTTTACAGCTGTTGTCCTGGTATCTGCAGATCGATC 1325
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1326 TGGAATAGAAAACGTCAACTCTGTGGAGGCTTTGCAGGAAACTCTCATTCGTGCACTAAGGACCTTAATAATGA 1399
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1400 AAAACCATCCAAATGAGGCCTCTATTTTTACAAAACTGCTTCTAAAGTTGCCAGATCTTCGATCTTTAAACAAC 1473
Query 1225 --------------------------------------- 1224
Sbjct 1474 ATGCACTCTGAGGAGCTCTTGGCCTTTAAAGTTCACCCT 1512
