Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11494
- Subject:
- NM_001177811.1
- Aligned Length:
- 2728
- Identities:
- 834
- Gaps:
- 1766
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAAGGTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGC 74
Query 1 ----------------------------------------------------ATGGTGTTGAGAAGGATGCACC 22
||||||||||..||.|||||||
Sbjct 75 ACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGTTGAAGAGAATGCACC 148
Query 23 GGCCCCGAAGCTGCTCCTACCAGCTGCTGCTGGAGCACCAGCGTCCGAGCTGCATCCAGGGGCTGCGCTGGACA 96
|.|||||..|||||||.||||||||..||.|.|||||||.|||.||.||||||||||||||.||.|||||||||
Sbjct 149 GTCCCCGCTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCCAGCTGCATCCAGGGACTCCGCTGGACA 222
Query 97 CCACTCACCAACAGCGAGGAGTCCCTGGATTTCAGCGAGAGCCTGGAGCAGGCCTCCACAGAGCGGGTGCTCAG 170
|||||.||||||||||||||.||||||||||||||.|.|||.||||||||||||.|||||||||..||||.||.
Sbjct 223 CCACTTACCAACAGCGAGGACTCCCTGGATTTCAGAGTGAGTCTGGAGCAGGCCACCACAGAGCATGTGCACAA 296
Query 171 GGCTGGGAGGCAGCTGCATCGGCATCTGCTGGCCACCTGCCCAAACCTCATCCGAGACCGGAAGTACCACCTTA 244
|||.||||.||..|||||.||.|||||..|||||||.|.|||.|.|||||||||||||.|.||.|||||.||..
Sbjct 297 GGCAGGGAAGCTCCTGCACCGCCATCTCTTGGCCACGTACCCTACCCTCATCCGAGACAGAAAATACCATCTGC 370
Query 245 GGCTCTATCGGCAGTGCTGCTCTGGCCGGGAGCTGGTGGATGGGATCTTGGCCCTGGGACTTGGGGTCCATTCC 318
|.||.||||||||.||||||||||||||||||||.|||||||||||||||||.|||||.|||||||||||.||.
Sbjct 371 GACTATATCGGCATTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGGCTTGGGGTCCACTCA 444
Query 319 CGGAGCCAAGTTGTGGGAATCTGCCAGGTGCTGCTGGATGAAGGTGCCCTCTGCCATGTGAAACACGACTGGGC 392
||||||||||..|||||.||||||||.|||.||||||||||.||||||||.||.|||||.|||||.||||||.|
Sbjct 445 CGGAGCCAAGCCGTGGGCATCTGCCAAGTGTTGCTGGATGAGGGTGCCCTTTGTCATGTAAAACATGACTGGAC 518
Query 393 CTTCCAGGACCGAGATGCCCAATTCTACCGGTTCCCCGGGCCCGAGCCCGAGCCCGTGGGAACTCATGAGATGG 466
||||||||||||||||||||||||||||.|||||||.||.||.|||||||||||....||||||||.||..|||
Sbjct 519 CTTCCAGGACCGAGATGCCCAATTCTACAGGTTCCCTGGACCGGAGCCCGAGCCTACAGGAACTCAAGATGTGG 592
Query 467 AGGAGGAGTTGGCCGAAGCTGTGGCCCTGCTCTCCCAGCGGGGGCCTGACGCCATGCTCACTGTGGCACTTCGA 540
|.||||||.|.|..||.|||.|||||||.||.||||||||.||||||||.|||.|.|||||.|||||.||.||.
Sbjct 593 AAGAGGAGCTTGTTGAGGCTATGGCCCTCCTGTCCCAGCGAGGGCCTGATGCCCTACTCACCGTGGCGCTCCGG 666
Query 541 AAGCCCCCAGGTCAGCGCACGGATGAAGAGCTGGACCTCATCTTTGAGGAGCTGCTGCACATCAAGGCTGTGGC 614
|||||||||||||||||.|||||||||||.||||||||.||||||||.|||||||||||.||||||||.|||||
Sbjct 667 AAGCCCCCAGGTCAGCGTACGGATGAAGAACTGGACCTGATCTTTGAAGAGCTGCTGCATATCAAGGCGGTGGC 740
Query 615 CCACCTCTCCAACTCGGTGAAGCGAGAATTAGCGGCTGTTCTGCTCTTTGAACCACACAGCAAGGCAGGGACCG 688
.|||||.||.||||||||||||||.|||.||||.|||||||||||||||||||||||||||||||||||.||.|
Sbjct 741 ACACCTTTCTAACTCGGTGAAGCGGGAACTAGCTGCTGTTCTGCTCTTTGAACCACACAGCAAGGCAGGAACTG 814
Query 689 TGTTGTTCAGCCAGGGGGACAAGGGCACTTCGTGGTACATTATCTGGAAGGGATCTGTCAACGTGGTGACCCAT 762
|||||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 815 TGTTGTTCAGCCAGGGGGACAAGGGTACCTCGTGGTACATTATCTGGAAGGGATCTGTCAATGTGGTGACCCAT 888
Query 763 GGCAAGGGGCTGGTGACCACCCTGCATGAGGGAGATGATTTTGGACAGCTGGCTCTGGTGAATGATGCACCCCG 836
||||||||||||||||||||..||||.|||||||||||.|||||||||||||||||||||||.||.|||||.||
Sbjct 889 GGCAAGGGGCTGGTGACCACGTTGCACGAGGGAGATGACTTTGGACAGCTGGCTCTGGTGAACGACGCACCTCG 962
Query 837 GGCAGCCACCATCATCCTGCGAGAAGACAACTGTCATTTCCTGCGTGTGGACAAGCAGGACTTCAACCGTATCA 910
||||||||||||||||||.||||||.|.||||||||.||.|||||||||||||||||||||||||||||.||||
Sbjct 963 GGCAGCCACCATCATCCTTCGAGAAAATAACTGTCACTTTCTGCGTGTGGACAAGCAGGACTTCAACCGCATCA 1036
Query 911 TCAAGG-TG--------------------CTG--------CTGC----TGG----GGTTGGGGAGGG------- 940
|||||| || ||| |.|| ||| .|||..||||.|
Sbjct 1037 TCAAGGATGTGGAAGCAAAAACCATGAGACTGGAAGAACACGGCAAAGTGGTCTTAGTTCTGGAGAGAACCTCT 1110
Query 941 CAGG-----GGCCATT--CGT---------CCAGAGAAG----------------------------------- 963
|||| ||||.|| ||| |||| |.||
Sbjct 1111 CAGGGTGCTGGCCCTTCCCGTCCCCCGACCCCAG-GCAGGAACCGGTATACGGTCATGTCTGGCACCCCAGAGA 1183
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1184 AAATCCTAGAACTGCTGTTGGAGGCTATGAGACCGGATTCCAGTGCTCATGACCCAACAGAGACGTTCCTCAGT 1257
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1258 GACTTCCTGCTGACCCACAGTGTCTTCATGCCCAGCACCCAGCTCTTCACTGCCCTCCTGCACCACTTCCACGT 1331
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1332 GGAGCCAGCAGACCCTGCTGGAGGCAGCGAGCAGGAGCACAGCACCTACATCTGCAACAAGAGGCAGCAGATCC 1405
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1406 TGCGGCTAGTTGGCCGATGGGTGGCCCTGTATAGCCCGATGCTCCACTCGGATCCCGTGGCCACCAGCTTCCTC 1479
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1480 CAGAAACTCTCAGACCTGGTGAGCAGAGATGCCCGACTTAGCAACTTGCTGAGGGAACAGTATCCAGAGAGACG 1553
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1554 GCGACACCACAGGTTGGAAAATGGCTGTGGGAACGTATCTCCTCAGACCAAGGCCCGGAATGCACCTGTTTGGC 1627
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1628 TCCCTAACCAGGAGGAACCCCTCCCAAGCAGCGCGGGTGCCATCCGAGTTGGGGACAAAGTCCCCTACGACATC 1701
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1702 TGCAGACCTGACCACTCAGTGCTGACCCTGCACCTGCCGGTGACGGCCTCGGTGAGAGAAGTGATGGCAGCTTT 1775
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1776 GGCCCATGAGGACCACTGGACCAAGGGACAGGTGTTGGTGAAGGTCAATTCTGCCGGTGATGTCGTTGGCTTGC 1849
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1850 AGCCAGATGCCCGTGGTGTGGCCACATCCCTGGGGCTCAACGAGCGGCTCTTTGTTGTCGACCCACAGGAAGTG 1923
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1924 CATGAGCTGACCCCACACCCTGAGCAGCTGGGCCCCACTCTGGGTTCTTCTGAGATGCTGGACCTAGTGAGCGC 1997
Query 964 -------------------------------------------------------------------------- 963
Sbjct 1998 CAAGGACCTGGCAGGCCAGCTGACCGACCATGACTGGAACCTCTTCAACAGGATCCACCAGGTGGAGCTGATCC 2071
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2072 ATTATGTACTGGGCCCCCAGCACCTGCGGGATGTCACCACCGCGAACCTGGAGCGCTTCATGCGCCGCTTCAAC 2145
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2146 GAGCTGCAGTACTGGGTGGCCACAGAGCTCTGTCTCTGCCCTGTTCCTGGCTCCCGGGCTCAGCTACTCAGGAA 2219
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2220 GTTCATCAAGCTGGCAGCCCACCTCAAGGAGCAGAAGAACCTCAACTCTTTCTTTGCGGTCATGTTTGGCCTCA 2293
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2294 GCAACTCGGCCATCAGCCGGCTGGCCCACACCTGGGAGGACCCTTCCTGGAACCACCGAGTGTACCGATTGGCT 2367
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2368 CTCACCAAGCTCTCCCCTCCTGTCATCCCCTTCATGCCCCTGCTGCTCAAAGACGTGACCTTCATCCATGAGGG 2441
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2442 GAACCACACACTGGTAGAGAACCTCATCAACTTTGAGAAGATGCGGATGATGGCCAGAGCGGTGCGGATGCTTC 2515
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2516 ACCACTGCCGAAGTCACAGTACCGCGCCTCTATCACCACTCAGAAGCCGAGTGTCCCACATCCACGAGGACAGC 2589
Query 964 -------------------------------------------------------------------------- 963
Sbjct 2590 CAGGGATCAAGGATCTCCACGTGTTCTGAGCAGTCCCTGAGCACCCGGAGTCCAGCCAGCACCTGGGCTTATGT 2663
Query 964 ---------------------------------------------------------------- 963
Sbjct 2664 CCAGCAGCTGAAGGTCATTGACAACCAGCGGGAACTGTCCCGCCTCTCCCGGGAGCTGGAACCA 2727
