Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11508
- Subject:
- XM_017000079.1
- Aligned Length:
- 2835
- Identities:
- 1473
- Gaps:
- 1269
Alignment
Query 1 ATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGGCCGC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGGCCGC 74
Query 75 CTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAGGTACTTCCCCATTATCCTGGTTTCGGGGCC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAGGTACTTCCCCATTATCCTGGTTTCGGGGCC 148
Query 149 TGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTA 222
Query 223 GTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGGGGCTGGTGCCCAACAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGGGGCTGGTGCCCAACAA 296
Query 297 GTATCTAACATGGAGAAGCCAAGATGTGGAGAACTGTGCTGTACGGGGAAAGCTGACGGATGAGTGCTACAACT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTATCTAACATGGAGAAGCCAAGATGTGGAGAACTGTGCTGTACGGGGAAAGCTGACGGATGAGTGCTACAACT 370
Query 371 ATATTCGTGTTCTTGTTCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGAACGAACTCATTCAGCCCTGTGTGC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATATTCGTGTTCTTGTTCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGAACGAACTCATTCAGCCCTGTGTGC 444
Query 445 CGCAGCTATGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGAGTGGGCAGGCTCGATGCCCCTTTGATGC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGCAGCTATGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGAGTGGGCAGGCTCGATGCCCCTTTGATGC 518
Query 519 CACCCAGTCCAACGTGGCCATCTTTGCAGAGGGCAGCCTGTACTCAGCCACAGCTGCGGATTTCCAGGCCAGTG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CACCCAGTCCAACGTGGCCATCTTTGCAGAGGGCAGCCTGTACTCAGCCACAGCTGCGGATTTCCAGGCCAGTG 592
Query 593 ATGCTGTAGTTTACAGAAGCCTTGGGCCCCAGCCCCCACTCCGCTCCGCCAAGTATGACTCCAAGTGGCTCCGA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGCTGTAGTTTACAGAAGCCTTGGGCCCCAGCCCCCACTCCGCTCCGCCAAGTATGACTCCAAGTGGCTCCGA 666
Query 667 GAGCCACACTTTGTCCAGGCCTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGCCACACTTTGTCCAGGCCTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGA 740
Query 741 TGCTCGGCTGGGGAGGGTGCAGTTCTCCCGCGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCTCGGCTGGGGAGGGTGCAGTTCTCCCGCGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGG 814
Query 815 CCTTGGACCGCCACTGGACATCCTTCCTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTAT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCTTGGACCGCCACTGGACATCCTTCCTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTAT 888
Query 889 TTTGATGTTTTACAGGCCTTGACTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCAC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTGATGTTTTACAGGCCTTGACTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCAC 962
Query 963 CCAGACCAATAGCATCCCTGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTGAGGGCA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCAGACCAATAGCATCCCTGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTGAGGGCA 1036
Query 1037 AGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTCACCCAGGCCA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTCACCCAGGCCA 1110
Query 1111 GGATC--------------------CTGCCCTG--CTCACT-----CGAGTC--CCCTCGGGAGGTC------- 1148
||||| |||||.|| ||| || ||||.| ||||...||.|||
Sbjct 1111 GGATCCTGTGCAGGAGTAGGGGGAGCTGCCTTGTTCTC-CTCTTCCCGAGACCTCCCTGATGATGTCCTGACCT 1183
Query 1149 -CCTCCAGGTACTCCGG-----GGGTCCCG-GGAAGCACCT------------CCTGTAC-------------C 1190
|.||.|||..|.||.| ||..|||| .|.|.||||| |||.||| |
Sbjct 1184 TCATCAAGGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTCTACTCACTCTCACTAGC 1257
Query 1191 TGGGCC-----GGCCCGAG----------------GGCTACCGGGGCC-------------------------- 1217
.||||| |.|||.|| |||| ||.||
Sbjct 1258 AGGGCCCTACTGACCCAAGTAGCTGTGGATGGCATGGCT----GGTCCCCACAGTAACATCACAGTCATGTTCC 1327
Query 1218 ---GCGCC---------------CTGAAAAG------------GGTGGACG-TC-------------------- 1240
||.|| ||| ||| |||||.|| ||
Sbjct 1328 TTGGCTCCAATGATGGGACAGTGCTG--AAGGTGCTGACCCCAGGTGGGCGATCCGGGGGACCTGAGCCCATCC 1399
Query 1241 --------GAGA-----------AGCCC---------CAGTTGTCCCTGAAGC---CTCCCC------------ 1271
|||| ||||| ||||.| ||||| |..|||
Sbjct 1400 TCCTGGAAGAGATTGATGCCTACAGCCCTGCCCGGTGCAGTGG-----GAAGCGGACAGCCCAAACAGCACGAC 1468
Query 1272 ---TCGTCGGGC-------------------------------------------------------CCTCCTC 1287
||.|.|||| |..||||
Sbjct 1469 GGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTTTTCTGGCTGTATTGTCTACCTC 1542
Query 1288 CCGC-CAGGCCGT----CCCGAACGGCGGCC-------------GTT-------TCA--------ACTTTTAAA 1328
||.| |||.|.|| ||.|.|.|| |||| ||| ||| |||.|..|.
Sbjct 1543 CCTCTCAGCCGGTGTGCCCGGCATGG-GGCCTGTCAGAGGAGCTGTTTGGCTTCTCAGGACCCATACTGTGGAT 1615
Query 1329 GGGAGCGGTCCACGGCCTCCAGCGT--------GGGGAGC----------------------GC------CC-- 1364
||.|..|.||||.||.|| |.|| |||||.| || ||
Sbjct 1616 GGCATAGCTCCAGGGGCT---GTGTGGATATCAGGGGATCTGGTGGGACTGATGTGGATCAGGCTGGGAACCAG 1686
Query 1365 GAGTCC-----------TCTCGGCCACGAGCTGGACGCT-CT-----TCAG---------GACGTTTC------ 1406
||.||| |..|.|||| ||.|||| ||| || |||| |..|.|||
Sbjct 1687 GAATCCATGGAGCATGGTGACTGCCA--AGATGGA-GCTACTGGGAGTCAGTCTGGCCCTGGGGATTCTGCTTA 1757
Query 1407 --------------ACC-GCCC----CCTCG---CCCCGCACC-TCCAGCCTTCCCGACTC-------GCAGAG 1450
||| |||| ||||| .|||||.|| ||| ||.|||| |||| .|||.|
Sbjct 1758 TGGCGTGCGCCGGGACCTGCCCCCAGCCTCGGCCTCCCGCTCCGTCC--CCATCCC-ACTCCTCCTGGCCAGTG 1828
Query 1451 TCTCCCGAGGCCCCTTTT--------CGCCTCGGGTTTATTTATTGACT----GTCTTTCCCCCTGTCCT---- 1508
|..|| ||..||||| ||||||.| |.|.|.|.|| |||| |||||.||
Sbjct 1829 TGGCC----GCAGCTTTTGCCCTGGGCGCCTCAG-----TCTCTGGCCTCCTGGTCT-----CCTGTGCTTGTC 1888
Query 1509 -------CGACAGAAGAGTGGG--AGG----TGAGA-------------------------------------A 1532
|.||.||.|...||| ||| .|||| .
Sbjct 1889 GCCGCGCCCACCGACGTCGGGGCAAGGACATCGAGACTCCGGGGCTCCCGCGCCCTCTCTCCCTCCGCAGTTTG 1962
Query 1533 GCCCGTCTCCTCAGTGAG---CCAG----------------CATTTCAG---GGGGA-GCTG-GCGGACTCC-C 1581
|||||.||||.|.|||.| |||| || || ||||| ||.| ||.|||.|| |
Sbjct 1963 GCCCGGCTCCACGGTGGGGGCCCAGAGCCCCCGCCGCCCTCCA----AGGACGGGGACGCGGTGCAGACGCCGC 2032
Query 1582 A-CTCCCCGCTCCCTTCCAGCCAAGCTGCCT------------------------------------------- 1611
| |||..|.|..||||||.||| ||||
Sbjct 2033 AGCTCTACACCACCTTCCTGCC-----GCCTCCGGAGGGCGTGCCCCCGCCGGAGCTGGCCTGCCTGCCCACCC 2101
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2102 CCGAGTCCACGCCGGAGCTGCCGGTCAAGCACCTCCGCGCCGCCGGGGACCCCTGGGAGTGGAACCAGAACAGG 2175
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2176 AACAACGCCAAGGAGGGTCCGGGCCGCTCACGGGGCGGGCACGCGGCGGGCGGGCCCGCGCCCCGCGTGCTGGT 2249
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2250 GAGGCCACCGCCGCCCGGCTGTCCCGGGCAGGCCGTGGAAGTCACCACCCTGGAGGAACTGCTGCGCTACCTGC 2323
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2324 ACGGCCCGCAGCCGCCCAGAAAGGGGGCCGAGCCCCCCGCCCCTTTAACCTCGCGGGCGCTCCCGCCGGAGCCC 2397
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2398 GCCCCCGCCCTCTTGGGCGGCCCCAGCCCCAGGCCCCACGAGTGCGCCTCGCCGCTGAGGCTGGACGTGCCCCC 2471
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2472 CGAGGGCAGGTGCGCCTCTGCCCCCGCCCGGCCCGCGCTCTCCGCCCCCGCTCCCCGGCTGGGCGTCGGCGGAG 2545
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2546 GCCGGAGGTTGCCTTTCTCCGGCCACCGGGCCCCCCCTGCCCTGCTCACTCGAGTCCCCTCGGGAGGTCCCTCC 2619
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2620 AGGTACTCCGGGGGTCCCGGGAAGCACCTCCTGTACCTGGGCCGGCCCGAGGGCTACCGGGGCCGCGCCCTGAA 2693
Query 1612 -------------------------------------------------------------------------- 1611
Sbjct 2694 AAGGGTGGACGTCGAGAAGCCCCAGTTGTCCCTGAAGCCTCCCCTCGTCGGGCCCTCCTCCCGCCAGGCCGTCC 2767
Query 1612 ----------------------- 1611
Sbjct 2768 CGAACGGCGGCCGTTTCAACTTT 2790
