Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11516
Subject:
NM_006393.2
Aligned Length:
3064
Identities:
2111
Gaps:
938

Alignment

Query    1  ATGAGGGTCCCTGTATTTGAGGATATAAAAGATGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGGGTCCCTGTATTTGAGGATATAAAAGATGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGA  74

Query   75  AGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTA  148

Query  149  GCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTA  222

Query  223  AACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAA  296

Query  297  TTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGG  370

Query  371  TGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTT  444

Query  445  AAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTA  518

Query  519  CAGTGCAGAACTTGACCTACCAGACATCAAGATGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACA  592
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAGTGCAGAACTTGACCGACCAGACATCAAGATGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACA  592

Query  593  AGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCT  666

Query  667  TCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAA  740

Query  741  TCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAG  814

Query  815  ACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGC  888

Query  889  AAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGC  962

Query  963  TGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAA  1036

Query 1037  ATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAA  1110

Query 1111  AGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCC  1184

Query 1185  AGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGA  1258

Query 1259  TAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCA  1332

Query 1333  AGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCT  1406

Query 1407  TGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAA  1480

Query 1481  TTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCC  1554

Query 1555  AGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCC  1628

Query 1629  AGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGC  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGC  1702

Query 1703  TTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG  1776

Query 1777  GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAA  1850

Query 1851  TCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAAC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAAC  1924

Query 1925  TAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCG  1998

Query 1999  GTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGCAAGTCGTTTCTGTTT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||             
Sbjct 1999  GTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGTAA-------------  2059

Query 2073  CCTTTTATAT----------------------------TTTCT----------------------CAAA-----  2091
                 .||||                            |||||                      ||||     
Sbjct 2060  -----AATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCACCAGAGCTGAAGAGGGCAAAAGAAA  2128

Query 2092  -----CATAACAT-----ATTTTTATTTAAAAA--TATGCCCTTTGGAAG-GC-----CATTA--------TCC  2139
                 .|.|||||     ||.|||| |||.|.|  |..||   |.||||| ||     |.|||        |||
Sbjct 2129  ACCAGAAAAACATCAGCAATGTTTA-TTACAGAGGTCAGC---TGGGAAGAGCTACCACTTTAAGTGTAACTCC  2198

Query 2140  TTA---GCAAAC--------------------------------------------------------------  2148
            |.|   |.|||.                                                              
Sbjct 2199  TGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATATACCCAGGACCATAAACAGATGA  2272

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2273  AAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGAAGCACAAAATCATATTTCAATG  2346

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2347  GTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGA  2420

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2421  GAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGG  2494

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2495  ACAGGAGACCTGGAATCATTGTTGACCTCAAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACCTTGATCCC  2568

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2569  CTGGAAGACAATATTCAGTCTAGAAGTCTCCATATGCTCTCTGAAAAGGCGAGTCACTATAGGCGACACTGGTC  2642

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2643  TCGATCCCATTCCAGCAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCCGAGATTTACCCTA  2716

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2717  GCTTTTCATGCTGCAGTGAGGTAACAAGACCGTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAA  2790

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2791  AGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAA  2864

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2865  TCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACT  2938

Query 2149  --------------------------------------------------------------------------  2148
                                                                                      
Sbjct 2939  ACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATG  3012

Query 2149  ------------------------------  2148
                                          
Sbjct 3013  CTCCCAGCGAATTACATTGAGTTTGTTAAT  3042

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