Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11516
- Subject:
- XM_005252342.5
- Aligned Length:
- 3064
- Identities:
- 2010
- Gaps:
- 1040
Alignment
Query 1 ATGAGGGTCCCTGTATTTGAGGATATAAAAGATGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGGTCCCTGTATTTGAGGATATAAAAGATGAAACTGAAGAAGAAAAGATAGGGGAAGAAGAAAATGAAGA 74
Query 75 AGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTA 148
Query 149 GCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTA 222
Query 223 AACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCACCATTAAAGCTGACCTTTCTAA 296
Query 297 TTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAGG 370
Query 371 TGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCACATGAAGGAGCCCCCTGAGGTT 444
Query 445 AAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAGACGTGCAGGACACCCACACGTA 518
|||||||||||||||||||||||||||||||||
Sbjct 445 AAACATGCCATGGAGGTCAATAAACACCAGAGT----------------------------------------- 477
Query 519 CAGTGCAGAACTTGACCTACCAGACATCAAGATGGCAACCCAGATCTCTAAGATCATAAGCAATGCAGAATACA 592
|||||||||||||
Sbjct 478 -------------------------------------------------------------AATGCAGAATACA 490
Query 593 AGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGATTTTGAACATGCCGTGGAAGCT 564
Query 667 TCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGAAGGATAAGAAACATCATTACAA 638
Query 741 TCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCGAGCAATGTGAAGTACAAGAAAG 712
Query 815 ACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTTAGACCATGTTTTGAAAGCCAGC 786
Query 889 AAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAATGTATCATTTTGATGCAGATGC 860
Query 963 TGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAATATAAAGAAGAATATGAGAAAA 934
Query 1037 ATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 ATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTCAAAGGAGGCTCAAAAGATGCAA 1008
Query 1111 AGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCATCACTGGATTTAGACAAGACTCC 1082
Query 1185 AGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATATAAAAAAGATTTGGAAAATGAGA 1156
Query 1259 TAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGCAAAGCGAGCCTCTGAAATGGCA 1230
Query 1333 AGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAATGCAAGCTGGCACTGACACCCT 1304
Query 1407 TGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTATAAAAGAGATCTGGAGACTGAAA 1378
Query 1481 TTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGCTAAGAAAGCATCCGAGATGGCC 1452
Query 1555 AGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCC 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 AGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCC 1526
Query 1629 AGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGC 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTATAAAGATGAAGCAGAGAAGATGC 1600
Query 1703 TTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG 1674
Query 1777 GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAA 1748
Query 1851 TCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAAC 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAAC 1822
Query 1925 TAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCG 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 TAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCG 1896
Query 1999 GTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGCAAGTCGTTTCTGTTT 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1897 GTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGTAA------------- 1957
Query 2073 CCTTTTATAT----------------------------TTTCT----------------------CAAA----- 2091
.|||| ||||| ||||
Sbjct 1958 -----AATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCACCAGAGCTGAAGAGGGCAAAAGAAA 2026
Query 2092 -----CATAACAT-----ATTTTTATTTAAAAA--TATGCCCTTTGGAAG-GC-----CATTA--------TCC 2139
.|.||||| ||.|||| |||.|.| |..|| |.||||| || |.||| |||
Sbjct 2027 ACCAGAAAAACATCAGCAATGTTTA-TTACAGAGGTCAGC---TGGGAAGAGCTACCACTTTAAGTGTAACTCC 2096
Query 2140 TTA---GCAAAC-------------------------------------------------------------- 2148
|.| |.|||.
Sbjct 2097 TGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATATACCCAGGACCATAAACAGATGA 2170
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2171 AAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGAAGCACAAAATCATATTTCAATG 2244
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2245 GTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGA 2318
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2319 GAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGG 2392
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2393 ACAGGAGACCTGGAATCATTGTTGACCTCAAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACCTTGATCCC 2466
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2467 CTGGAAGACAATATTCAGTCTAGAAGTCTCCATATGCTCTCTGAAAAGGCGAGTCACTATAGGCGACACTGGTC 2540
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2541 TCGATCCCATTCCAGCAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCCGAGATTTACCCTA 2614
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2615 GCTTTTCATGCTGCAGTGAGGTAACAAGACCGTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAA 2688
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2689 AGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAA 2762
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2763 TCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACT 2836
Query 2149 -------------------------------------------------------------------------- 2148
Sbjct 2837 ACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATG 2910
Query 2149 ------------------------------ 2148
Sbjct 2911 CTCCCAGCGAATTACATTGAGTTTGTTAAT 2940
