Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11537
- Subject:
- XR_871691.2
- Aligned Length:
- 2984
- Identities:
- 1344
- Gaps:
- 1451
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTTGAAAAAAGTAAAACAAAATGAAACCAAAAAAGCTCAGCTCTGGGGCCCATGCTAGCGTGTCTATAGACAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTATCTGCAATCTCTCTAAGCCTCATCTGTACCACAGGTGACAGGGAGATGGCCACTTCCTGAAAATGAGCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGGGCAGTGGGTCAACATGGGCGTGACATTGTCACACTCAGGAATATGTGTTGCCTTTCCTGCCACCCCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCTCGCCCATAGAGAGATGGCACATACTGGCCCAGCACCTACTTCTGGTGACTCACGACCGCCTGTCACTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTCCACAGAATTTAACACACCAACATGCATGTATGTTTTAAAGGAAATGTGTCATCCCTATGGCCCAGAGCT 370
Query 1 ---------------------------------------ATGTCT------------TCCACGGG------GCA 17
|||||| |.|| ||| |||
Sbjct 371 CTTGACCAAGGTGACAGCAGTTCCAGGAAGACAGCCACTATGTCTCTGAGCAGTGCCTTCA-GGGCTGTGAGCA 443
Query 18 -----CCCTGGCTCCT-ACAAAATATGGGGA---GAGAAAATGGAGCTGGCGCTGGTGCCTGTGAGCGCCCACG 82
|||.||.||.| || ||||.|| ||||||||||||||||||||||||||..||||.||.||||
Sbjct 444 ACGACCCCCGGATCATCAC-----ATGGAGAATTGAGAAAATGGAGCTGGCGCTGGTGCCCCTGAGTGCTCACG 512
Query 83 GCAACTTCTATGAGGGGGACTGCTACGTCATCCTCTCGACCCGGAGAGTGGCCAGTCTCCTATCCCAGGACATC 156
||||||||||.|||||.|||||||||.||.|||||||||||||||||||||.|||.||.||.||||||.|||||
Sbjct 513 GCAACTTCTACGAGGGAGACTGCTACATCGTCCTCTCGACCCGGAGAGTGGGCAGCCTTCTCTCCCAGAACATC 586
Query 157 CACTTCTGGATCGGGAAGGACTCCTCCCAGGATGAGCAAAGCTGCGCAGCCATATATACCACACAGCTGGACGA 230
|||||.||||||||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||||||||.||
Sbjct 587 CACTTTTGGATCGGGAAGGACTCCTCCCAGGACGAGCAGAGCTGCGCGGCCATCTATACCACACAGCTGGATGA 660
Query 231 CTACCTGGGAGGCAGCCCTGTGCAGCACCGAGAGGTCCAGTACCATGAGTCAGACACTTTCCGTGGCTACTTCA 304
||||||||||||||||||.|||||||||||.||||||||||||||.|||||.|||||.||||||||||||||||
Sbjct 661 CTACCTGGGAGGCAGCCCGGTGCAGCACCGTGAGGTCCAGTACCACGAGTCCGACACCTTCCGTGGCTACTTCA 734
Query 305 AGCAGGGCATCATCTACAAGCAGGGGGGTGTCGCCTCTGGGATGAAGCACGTGGAGACCAATACCTACGACGTG 378
||||||||||||||||.||..||||||||||.|||||||||||||||||||||||||||||.|||||.||.|||
Sbjct 735 AGCAGGGCATCATCTATAAAAAGGGGGGTGTGGCCTCTGGGATGAAGCACGTGGAGACCAACACCTATGATGTG 808
Query 379 AAGCGGCTGCTACATGTGAAAGGGAAAAGAAACATC----------AGG------------------------- 417
|||.||||||||||.||.||.||||||||||||||| |||
Sbjct 809 AAGAGGCTGCTACACGTAAAGGGGAAAAGAAACATCCAAGCCACGGAGGTGAGTCTCACACGTGAGTGTCCTGG 882
Query 418 ---------GCTACCG----------------------------------------------AGGTGGAAATGA 436
|||.||| ||||||||||||
Sbjct 883 GTGCCCGGTGCTCCCGCCCTGGCACCTAAGACTGCCCCGAACCGCTCTGACTGCTCACACGCAGGTGGAAATGA 956
Query 437 GCTGGGACAGTTTCAACCGAGGTGATGTCTTCTTGCTGGACCTTGGGAAAGTCATCATCCAATGGAATGGCCCA 510
||||||||||.||.||||||||.|||||||||.|||||||||||||||..|||||||||||.|||||||||||.
Sbjct 957 GCTGGGACAGCTTTAACCGAGGCGATGTCTTCCTGCTGGACCTTGGGATGGTCATCATCCAGTGGAATGGCCCG 1030
Query 511 GAGAGCAACAGTGGGGAGCGCCTGAAGGCTATGCTTCTGGCAAAGGATATTCGAGACAGGGAGCGAGGGGGCCG 584
|||||||||||||||||.||.||.|||||||||||||||||||||||.|||||.||||||||||||||||||||
Sbjct 1031 GAGAGCAACAGTGGGGAACGTCTCAAGGCTATGCTTCTGGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCG 1104
Query 585 TGCTGAAATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCAGAGCTGATGAAGGTCCTTCAGGACACCC 658
|||||||||.||.|||||.|||||||||||||||||.||||||||||.||||||||..|||||.|||||.||||
Sbjct 1105 TGCTGAAATTGGGGTGATTGAGGGAGACAAGGAGGCGGCCAGCCCAGGGCTGATGACAGTCCTCCAGGATACCC 1178
Query 659 TTGGCCGACGCTCCATTATCAAGCCTACAGTCCCTGATGAGATCATAGATCAGAAGCAGAAATCAACTATCATG 732
||||.|||||||||||.||.||||||.||||..|||||||||||||.||.||..|.||||||||||.|||||||
Sbjct 1179 TTGGTCGACGCTCCATGATAAAGCCTGCAGTTTCTGATGAGATCATGGACCAACAACAGAAATCAAGTATCATG 1252
Query 733 TTGTATCATATCTCAGATTCAGCTGGGCAGCTGGCAGTCACAGAGGTAGCAACAAGGCCTCTGGTCCAGGACTT 806
||.||||||.||||.||..||||||||||||||.|||||||||||||.|||||||||||.||||||||||||.|
Sbjct 1253 TTATATCATGTCTCCGACACAGCTGGGCAGCTGTCAGTCACAGAGGTGGCAACAAGGCCCCTGGTCCAGGACCT 1326
Query 807 ACTGAACCATGATGACTGCTACATCCTGGACCAAAGTGGAACCAAAATCTACGTGTGGAAAGGAAAAGGAGCCA 880
|||||||||.|||||||||||||||||||||||||||||.|||||.|||||||||||||||||.||||||||||
Sbjct 1327 ACTGAACCACGATGACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAGGCAAAGGAGCCA 1400
Query 881 CAAAGGCTGAAAAACAGGCAGCCATGTCTAAAGCGCTGGGCTTCATCAAGATGAAGAGCTACCCCAGCAGCACC 954
|.||||.|||.||||||||.||||||||.|||||.||||..|||||||||||||||.|.|||||||||||||||
Sbjct 1401 CCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTGGATTTCATCAAGATGAAGGGATACCCCAGCAGCACC 1474
Query 955 AATGTGGAGACCGTCAACGATGGTGCTGAGTCGGCCATGTTCAAGCAGCTGTTCCAGAAGTGGTCAGTAAAGGA 1028
||.||||||||||||||||||||.||.|||||||||||||||||.|||.||||||||||.|||||.||.|||||
Sbjct 1475 AACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGA 1548
Query 1029 CCAGACCATGGGCCTGGGGAAAACGTTCAGCATTGGTAAAATTGCTAAAGTTTTCCAGGATAAATTTGATGTGA 1102
||||||||.||||.|||||||||..|||||||.|||||||||.||||||.|.||||||||.||.||.||||||.
Sbjct 1549 CCAGACCACGGGCTTGGGGAAAATATTCAGCACTGGTAAAATCGCTAAAATCTTCCAGGACAAGTTCGATGTGT 1622
Query 1103 CTCTGCTACACACCAAGCCAGAGGTAGCTGCCCAGGAAAGAATGGTCGATGATGGCAACGGAAAAGTTGAGGTC 1176
||||||||||||||||||||||.||.|||||.|||||.||||||||.||.||.|||||.||..|.|||||||||
Sbjct 1623 CTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGCCAGGTTGAGGTC 1696
Query 1177 TGGAGAATTGAGAACCTGGAGCTGGTCCCTGTGGAGTATCAATGGTATGGCTTCTTTTATGGGGGAGACTGTTA 1250
|||||||||||||||||||||||||||||.|||||.||.||.|||.||||||||||.||.|||||||||||.||
Sbjct 1697 TGGAGAATTGAGAACCTGGAGCTGGTCCCCGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTA 1770
Query 1251 TCTGGTCCTCTACACATACGAGGTAAATGGGAAGCCACATCACATCTTGTACATCTGGCAGGGCCGCCACGCCT 1324
||||||.||||||||.|||||.||.||.|||||.||.|||.|||||||||||||||||||||...|.|| |.|.
Sbjct 1771 TCTGGTTCTCTACACGTACGATGTGAACGGGAAACCCCATTACATCTTGTACATCTGGCAGGTAGGTCA-GGCG 1843
Query 1325 CACAGGATGAGCTGGCAGCCTCAGCATACCAGGCAGTGGAGGTGGATCGGCAGTTTGATGGGGCTGCTGTGCAG 1398
|| |||| |||||| |.||...||.||| ||| |||.||.|
Sbjct 1844 CA-------AGCT------CTCAGC----------GCGGTATTGAATC--CAG------GGGCCTCC------- 1879
Query 1399 GTTCGAGTCAGGATGGGAACGGAGCCACGCC---ACTTCATGGCCATCTTCAAAGGGAAGCTAGTTATCTTTGA 1469
.|||||| ||.|| ||.||.||..||||| ||.||.|||.|
Sbjct 1880 ------------CTGGGAA-------ACCCCATTACATCTTGTACATCT------GGCAGGTAGGT-------- 1920
Query 1470 GGGTGGGACTTCCAGG---AAGGGAAATGCCGAGCCTGACCCTC-CAGTAAGACTCTTCCAAATTCATGGAAAT 1539
|||| ||| ||| ||| |..||.|.|
Sbjct 1921 ------------CAGGCGCAAG-------------------CTCTCAG-----------------CGCGGTATT 1946
Query 1540 GACAAATCTAACACCAAAGCAGTGGAAGTTCCAGCCTTTGCCTCCTCCCT---AAACTCCAATGATGTCTTTCT 1610
| |||| |||.|| ||||||| |||| ||.||.|..||||
Sbjct 1947 G---AATC-----------CAGGGG------------------CCTCCCTGGGAAAC-CCCATTACATCTT--- 1984
Query 1611 GCTGCGAAC-TCAGGCAGAG----CAC---TACCTGTGGTATGGCAAGGGGTCTAGTGGGGATGAGCGGGCAAT 1676
|.|| ||.|||||.| ||| |.|| |||||||||.||||
Sbjct 1985 -----GTACATCTGGCAGGGCCGCCACGCATCCC------------------------GGGATGAGCTGGCA-- 2027
Query 1677 GGCTAAGGAGCTGGCCAGCCTTCTCTGTGAT--GGCAGCGAGAACACTGTGGCCGAGGGCCAGGAGCCAGCCGA 1748
|.|| |||||| || |||||.| |||| .||| .|||| |
Sbjct 2028 GCCT-----------CAGCCT--------ATCGGGCAGTG--------------GAGG---TGGA-TCAGC--A 2062
Query 1749 GTTCTG--GGACCTACTGGGAGGGAAAACTCCCTATGCCAATGATAAAAGACTTCAGCAGGAAATCCTAGATGT 1820
||| || |||.|..|||.|
Sbjct 2063 GTT-TGATGGAGCCCCTGTG------------------------------------------------------ 2081
Query 1821 CCAGTCTCGTCTCTTTGAATGTTCCAATAAGACCGGCCAATTCGTTGTCACTGAGATCACAGACTTCACCCAGG 1894
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 1895 ATGACCTGAACCCTACTGACGTGATGCTCCTAGATACCTGGGACCAGGTGTTCTTGTGGATTGGGGCTGAGGCC 1968
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 1969 AATGCCACGGAGAAGGAGAGTGCCCTTGCCACAGCACAGCAGTACCTGCACACTCACCCCAGCGGCCGAGATCC 2042
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2043 CGACACACCAATCCTGATCATTAAGCAGGGGTTTGAGCCTCCCATCTTCACAGGCTGGTTCCTAGCCTGGGACC 2116
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2117 CTAACATTTGGAGTGCAGGAAAAACATATGAACAATTAAAAGAAGAGCTGGGAGATGCTGCTGCTATCATGCGA 2190
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2191 ATCACTGCTGACATGAAGAATGCAACCCTCTCCCTGAATTCTAATGACAGTGAGCCAAAATATTACCCTATAGC 2264
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2265 AGTTCTGTTGAAAAACCAGAATCAGGAGCTGCCTGAGGATGTAAACCCTGCCAAAAAGGAGAATTACCTCTCTG 2338
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2339 AACAGGACTTTGTGTCTGTGTTTGGCATCACAAGAGGGCAATTTGCAGCTCTGCCTGGCTGGAAACAGCTCCAA 2412
Sbjct 2082 -------------------------------------------------------------------------- 2081
Query 2413 ATGAAGAAAGAAAAGGGGCTTTTC 2436
Sbjct 2082 ------------------------ 2081
