Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11547
- Subject:
- NM_001347480.1
- Aligned Length:
- 1974
- Identities:
- 1254
- Gaps:
- 555
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAAATTAT 74
Query 1 ----------------------------------------------ATGTCTCGAGTCCACGGTATGCACCCTA 28
|||||.|||||||||||||||||.||.|
Sbjct 75 CAGAAATCAGAAGCAGATTGCCAACATTGATCGTATTACAAAGTATATGTCCCGAGTCCACGGTATGCATCCCA 148
Query 29 AAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACAGTGGGCTGCAAA 102
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AAGAGACCACCCGCCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACAGTGGGCTGCAAA 222
Query 103 GGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACTGGGAAACAGAAAATCA 176
|||||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 223 GGTTCAAAAGCTGGTATTGAACAGGAAGGATATTGGTTACCAGGAGATGAGATT-------------------- 276
Query 177 TGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTTCGTGTGTATCATT 250
Sbjct 277 -------------------------------------------------------------------------- 276
Query 251 CCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGGCAGTGCCCAGTTTGCAGGAGCATT 324
||||||
Sbjct 277 --------------------------------------------------------------------AGCATT 282
Query 325 AAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGATTCATTGTCTCCCGCATGAAGGAGAGGGC 398
|||||||||.|..|.|||||.|||||.||||||||.|||.|.||.|||||.||||||||.|||||||||.||||
Sbjct 283 AAGAAGAAGCACTCTAACAAGCAGGAAATGGGCACCTACTTGAGGTTCATCGTCTCCCGAATGAAGGAGCGGGC 356
Query 399 TATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGTGCACTCAGCTGTGGACG 472
||||||.||||||||.||.||.|||||||.|||.||.||.||||||.||||||||||.|||||||||||.||||
Sbjct 357 TATAGACCTTAATAAGAAAGGAAAGGACAGTAAGCATCCTATGTACCGGAGGCTGGTCCACTCAGCTGTTGACG 430
Query 473 TTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATACCGAAGTTATGAAGAGTTCAAAGCTGATGCCCAATTG 546
|.||.|||||.||||||||.||||||||.|||||.|||||.|||||.||.||||||||.|||||.||.||..||
Sbjct 431 TCCCTACCATACAAGAGAAGGTGAATGAGGGGAAGTACCGGAGTTACGAGGAGTTCAAGGCTGACGCACAGCTG 504
Query 547 CTTCTCCACAATACCGTGATTTTCTATGG---AGACAGTGAGCAAGCTGACATTGCGAGGATGCTATATAAAGA 617
|||||||||||.||.|||||.|||||||| ||||||||||||.||.||||||||..|||||.||||||||||
Sbjct 505 CTTCTCCACAACACAGTGATCTTCTATGGAGCAGACAGTGAGCAGGCGGACATTGCACGGATGTTATATAAAGA 578
Query 618 CACATGTCATGAGCTGGATGAACTGCAGCTTTGCAAGAATTGCTTTTACTTGTCAAATGCTCGTCCTGACAACT 691
|||.|||||.||||||||.||.|||||||||||||||||.|||||.||..|||||||.||.||.||.|||||||
Sbjct 579 CACGTGTCACGAGCTGGACGAGCTGCAGCTTTGCAAGAACTGCTTCTATCTGTCAAACGCACGGCCCGACAACT 652
Query 692 GGTTCTGTTATCCTTGTATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCC 765
|||||||.||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGTTCTGCTACCCTTGCATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCC 726
Query 766 AAAGTCATGCAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGGCCTGGATTCC 839
|||||||||||||||||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||||||||
Sbjct 727 AAAGTCATGCAGAAAGAAGACAATCAAGTGGATGTTCGCTTCTTTGGCCATCACCACCAGAGAGCCTGGATTCC 800
Query 840 TTCTGAAAACATTCAAGATATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGTTGGAAAAAGG 913
||||||||||||.||.||||||||.|||||..||||.||.|||||||||||||||||.|||||.|||||.||||
Sbjct 801 TTCTGAAAACATCCAGGATATCACGGTCAATGTTCACCGACTGCACGTGAAGCGCAGCATGGGCTGGAAGAAGG 874
Query 914 CCTGTGATGAGCTGGAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAATGAGGACCGA 987
|||||||.||||||||.|||||||||||.|||||.||.|||||.||.||.|||||.||||||||||||||||||
Sbjct 875 CCTGTGACGAGCTGGAACTGCATCAGCGCTTCCTCCGTGAAGGAAGGTTCTGGAAGTCTAAGAATGAGGACCGA 948
Query 988 GGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAGAACCAAGAGC 1061
|||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||
Sbjct 949 GGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAACGAGCAGCTGAAGGTCACTCAAGAGCCAAGAGC 1022
Query 1062 AAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGA-------------------------------- 1103
|||||||||||||||||||||.||||||||||||||||||||
Sbjct 1023 AAAGAAAGGACGACGTAATCAGAGTGTGGAGCCCAAAAAGGAAGTAAGTTGCCCGCCTCACAGTGTCCAGGTGG 1096
Query 1104 -------------------------------------------------------------------------- 1103
Sbjct 1097 CAATCGAAAGAGGAAAGAGTCTCAAAGTACGCTCAAGACAGTCAAGTAATATCCGTCAAGTTAAGGCCCAGTCT 1170
Query 1104 --------------------------------------------------------------AGAACCAGAGCC 1115
||||||.|||||
Sbjct 1171 CCCGACTCCTGTCGTTGTGGACTGCTGCTCGACCAGCACGCCAGTGCACAGTCTCCGTCCCCAGAACCCGAGCC 1244
Query 1116 TGAAACAGAAGCAGTAAGTTCTAGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAA 1189
.|||||.||||||||.|||||.|||||||||||.|||||.|||||||||||.||.||.|..||.||.|||||||
Sbjct 1245 AGAAACGGAAGCAGTGAGTTCCAGCCAGGAAATCCCCACAATGCCTCAGCCAATTGAGAGGGTGTCAGTGTCAA 1318
Query 1190 CTCAGACAAAGAAGTTAAGTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTG 1263
|.|||||.||||||||||||||||||||.|||.|||||||||||||.|||||.|||||.||.|.|||||||||.
Sbjct 1319 CCCAGACCAAGAAGTTAAGTGCCTCTTCCCCACGAATGCTGCATCGAAGCACTCAGACGACGAGCGACGGCGTC 1392
Query 1264 TGTCAGAGCATGTGCCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAA 1337
|||||||||||||||||.|||||.||||||||.||.||.||||||||.||||||.|||||||||||||||||||
Sbjct 1393 TGTCAGAGCATGTGCCACGACAAGTACACCAAAATTTTTAATGACTTTAAAGACAGGATGAAGTCGGACCACAA 1466
Query 1338 GCGGGAGACAGAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAG 1411
||||||.||||||.|.||.|||||.|||||.|||||.|||.|||||||||||||||||||||||||.|||||.|
Sbjct 1467 GCGGGAAACAGAGAGAGTGGTCCGTGAAGCGCTGGAAAAGTTGCGTTCTGAAATGGAAGAAGAAAAAAGACAGG 1540
Query 1412 CTGTAAATAAAGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAG 1485
|.||.||.||||||||.||||.|.|||||||.||.|||||||||||..|||||||..|.|||||.|||||.|||
Sbjct 1541 CCGTGAACAAAGCTGTGGCCAGCCTGCAGGGCGACATGGACAGAAAGGGTAAGCAGCTGAAGGAGAAGTGCAAG 1614
Query 1486 GAAGAATTTGTAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAGCA 1559
|||||.||||||||.||.|||||||||||.||..|.|||||||||||.||.|||||.|||||||||||||||||
Sbjct 1615 GAAGAGTTTGTAGAGGAGATCAAGAAGCTAGCGGCGCAGCACAAGCAGCTCATTTCCCAGACCAAGAAGAAGCA 1688
Query 1560 GTGG----------GT------------AAATACCA---------------GTCTTTTT--------------- 1581
|||| || |..||||| |||.|..|
Sbjct 1689 GTGGTGCTACAACTGTGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACGTCCTACTGCTCCATCAAGTGCC 1762
Query 1582 -------------------------------------------------- 1581
Sbjct 1763 AGCAGGAGCACTGGCACGCAGAGCACAAGCGCACCTGCCGCCGGAAGAGA 1812