Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11556
- Subject:
- NM_027406.1
- Aligned Length:
- 2709
- Identities:
- 1295
- Gaps:
- 1197
Alignment
Query 1 ATGAAGATTGCAGTGATTGGACAGAGCCTGTTTGGCCAGGAAGTTTACTGCCACCTGAGGAAGGAGGGCCACGA 74
||||||||||||||.||.||.||||||||||||||||||||.|||||||||||.||.||||||||||||||.||
Sbjct 1 ATGAAGATTGCAGTAATCGGGCAGAGCCTGTTTGGCCAGGAGGTTTACTGCCAGCTAAGGAAGGAGGGCCATGA 74
Query 75 AGTGGTGGGTGTGTTCACTGTTCCAGACAAGGATGGAAAGGCCGACCCCCTGGGTCTGGAAGCTGAGAAGGATG 148
.|||||||||||||||||..|.||||||||||||||.||.||.||.||||||||.|||||.||.||||||||||
Sbjct 75 GGTGGTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAAGCAGATCCCCTGGGCCTGGAGGCCGAGAAGGATG 148
Query 149 GAGTGCCGGTATTCAAGTACTCCCGGTGGCGTGCAAAAGGACAGGCTTTGCCTGATGTGGTGGCAAAATACCAG 222
|.|||||.||.||.||||.|.|.||||||||.||...||||||||||.||||.||.||.|||||.||.||||||
Sbjct 149 GCGTGCCCGTGTTTAAGTTCCCTCGGTGGCGGGCTCGAGGACAGGCTCTGCCCGAGGTCGTGGCCAAGTACCAG 222
Query 223 GCTTTGGGGGCCGAGCTCAACGTCCTGCCCTTCTGCAGCCAATTCATCCCCATGGAGATAATCAGTGCCCCCCG 296
|||.||||.||.||.||||||||.||.||||||||||||||.|||||.|||||||||.|.||||.|||||||||
Sbjct 223 GCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGAGGTCATCAATGCCCCCCG 296
Query 297 GCATGGCTCCATCATCTATCACCCGTCACTGCTCCCTAGGCACCGAGGGGCCTCGGCCATCAACTGGACCCTCA 370
||||||||||||||||||.||.||.||.|||||.||.|||||||||||||||||.|||||||||||||||||||
Sbjct 297 GCATGGCTCCATCATCTACCATCCATCTCTGCTGCCCAGGCACCGAGGGGCCTCAGCCATCAACTGGACCCTCA 370
Query 371 TTCACGGAGATAAGAAAGGGGGGTTTTCCATCTTCTGGGCGGATGATGGTCTGGACACCGGAGACCTGCTGCTG 444
||||.||||||||||||||.||.||..|.|||||||||||.|||||.|||||||||||.||.|||||.||||||
Sbjct 371 TTCATGGAGATAAGAAAGGAGGCTTCACTATCTTCTGGGCTGATGACGGTCTGGACACTGGTGACCTTCTGCTG 444
Query 445 CAGAAGGAGTGTGAGGTGCTCCCGGACGACACCGTGAGCACGCTGTACAACCGCTTCCTCTTCCCTGAAGGCAT 518
||||||||||||||.|||||.||.||.||||||||||||||||||||||||||.|||||||||||.||.|||||
Sbjct 445 CAGAAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCCAGAGGGCAT 518
Query 519 CAAAGGGATGGTGCAGGCCGTGAGGCTGATCGCTGAGGGCAAAGCCCCCAGAC-TCCCTCAGCCTGAGGAAGGA 591
||||||||||||.|||||.|||.|.|||||.||.|||||||.||||||..|.| |||| |||||||||||||||
Sbjct 519 CAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTCCC-CAGCCTGAGGAAGGA 591
Query 592 GCCACCTATGAGGGGATTCAGAAGAAGGAGACAGCCAAGATCAACTGGGACCAGCCGGCAGAGGCCATTCACAA 665
||||||||||||||.||||||||.|||||||||||||.||||||||||||||||||.|||||||||||||||||
Sbjct 592 GCCACCTATGAGGGCATTCAGAAAAAGGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAA 665
Query 666 CTGGATCCGCGGGAACGACAAGGTGCCGGGAGCCTGGACAGAGGCCTGTGAACAGAAACTGACATTTTTCAACT 739
|||||||||.|||||.|||||||||||.||.||||||||||||||.||||..|||||.|||||.||||||||||
Sbjct 666 CTGGATCCGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGAGGCTTGTGGGCAGAAGCTGACGTTTTTCAACT 739
Query 740 CAACGCTGAACACTTCAGGCCTGGTGCCCGAGGGAGACGCTTTGCCCATCCCAGGAGCCCATCGGCCAGGGGTG 813
|.||.||.|||||||||||.||||||.|..|||||||.|||.|.||||||||||||||||||||.|||||..|.
Sbjct 740 CGACACTCAACACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATCGTCCAGGCCTA 813
Query 814 GTCACCAAAGCAGGACTCATCCTCTTTGGGAATGATGACAAAATGCTGCTGGTGAAGAATATTCAGCTGGAGGA 887
|||||||||||.||||||||||||||||||||||||||.|.||||.||||||||||||||||.||||||||.||
Sbjct 814 GTCACCAAAGCGGGACTCATCCTCTTTGGGAATGATGATAGAATGTTGCTGGTGAAGAATATCCAGCTGGAAGA 887
Query 888 TGGCAAAATGATCCTGGCCTCGAACTTCTTTAAGGGGGCAGCCAGCAGTGTCCTTGAGCTGACAGAGGCAGAGC 961
||||||.|||||.|..|||||..|.|||||.||||||.|.||.|||||||.|||.||||||||.||||..||||
Sbjct 888 TGGCAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTCTGCTAGCAGTGCCCTGGAGCTGACCGAGGAGGAGC 961
Query 962 TGGTTACTGCGGAGGCTGTGCGGAGTGTTTGGCAGCGGATCCTCCCCAAAGTCCTGGAGGTTGAAGACTCCACT 1035
|||..||.||.|||||.||||||||...||||..|||.||.||.|||||.||||..|||||.||||||||.||.
Sbjct 962 TGGCCACAGCAGAGGCCGTGCGGAGCTCTTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCTACA 1035
Query 1036 GATTTCTTCAAGTCAGGGGCCGCGTCTGTGGACGTTGTGAGGCTGGTGGAGGAAGTGAAGGAGCTGTGTGATGG 1109
|||||||||||||||||.||.||.||.||.||.||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1036 GATTTCTTCAAGTCAGGAGCTGCATCCGTAGATGTTGTGAGGCTGGTGGAGGAGGTGAAGGAGCTGTGTGACGG 1109
Query 1110 CCTGGAGTTAGAAAATGAAGATGTGTACATGGCATCCACCTTTGGGGACTTCATCCAGCTGTTAGTGAGGAAGC 1183
.|||||||||||||||||.|||||.||||||||..|||||||.|||||||||||||||||..|||||||||||.
Sbjct 1110 GCTGGAGTTAGAAAATGAGGATGTTTACATGGCCACCACCTTCGGGGACTTCATCCAGCTCCTAGTGAGGAAGT 1183
Query 1184 TGCGAGGGGACGATGAGGAGGGCGAGTGCAGCATTGACTACGTGGAAATGGCAGTGAACAAGCGCACTGTCCGC 1257
||.|||||||.||.|..|||.|||||||...||||.||||||||||||.|||||||||.||.|..|||.|||..
Sbjct 1184 TGAGAGGGGAGGACGGCGAGAGCGAGTGTGTCATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACTCTCCAA 1257
Query 1258 ATGCCCCACCAGCTCTTCATTGGGGGGGAGTTCGTGGATGCCGAGGGCGCCAAGACCT-CTGAG-ACCATCAAT 1329
||||||.|||||||||||||.||.||.|||||.||||||||.||||||||.||||||| | || |||||.||.
Sbjct 1258 ATGCCCTACCAGCTCTTCATAGGCGGCGAGTTTGTGGATGCTGAGGGCGCGAAGACCTAC--AGTACCATAAAC 1329
Query 1330 CCCACCGATGGAAGTGTCATCTGCCAGGTATCCCTGGCCCAAGTCACCGACGTCGACAAGGCAGTGGCCGCAGC 1403
||.||.|||||||||||||||||||||||.||.||.||.||.||.|..||.||.||||||||.|||||.|||||
Sbjct 1330 CCAACGGATGGAAGTGTCATCTGCCAGGTGTCTCTAGCTCAGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGC 1403
Query 1404 CAAGGATGCCTTTGAGAATGGACGGTGGGGGAAGATCAGTGCGCGGGACCGGGGCCGGCTGATGTACAGG---- 1473
.|||||.||||||||||||||||.||||||.|||||.|.||||||.||||||||||||||..||||||||
Sbjct 1404 GAAGGAGGCCTTTGAGAATGGACTGTGGGGAAAGATAAATGCGCGTGACCGGGGCCGGCTCCTGTACAGGTTGG 1477
Query 1474 ----------------------------GCT------------------------------------------- 1476
|||
Sbjct 1478 CGGACCTCATGGAGCAGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACGCAGGTGCCGTCTACACGCTG 1551
Query 1477 -------------------------------------------------------------------------- 1476
Sbjct 1552 GCCCTGAAGACGCATGTGGGCATGTCCATCCAGACCTTCCGATACTTCGCTGGCTGGTGTGATAAGATCCAGGG 1625
Query 1477 --CCACCATCCCCATCAACCAGGCCAGACCCAACCGCAACC--------------------------------- 1515
||||||||||||||||||||||.||||||||||||||||
Sbjct 1626 TGCCACCATCCCCATCAACCAGGCTAGACCCAACCGCAACCTGACCTTGACCAAGAAGGAACCTGTTGGGGTCT 1699
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1700 GTGGTATTGTCATCCCCTGGAACTATCCCTTAATGATGCTGTCCTGGAAGACAGCAGCCTGCCTGGCTGCCGGG 1773
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1774 AACACCGTGGTGATCAAGCCTGCCCAGGTGACCCCACTCACAGCCTTGAAGTTTGCAGAGCTGACACTGAAGGC 1847
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1848 TGGCATTCCCAAGGGTGTGGTCAACATCCTCCCAGGATCTGGCTCGCTGGTTGGCCAGAGACTCTCAGACCACC 1921
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1922 CTGATGTGAGGAAAATAGGGTTCACAGGCTCCACGGAGGTGGGAAAACACATCATGAAAAGCTGTGCCCTGAGT 1995
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1996 AATGTGAAGAAGGTCTCCCTGGAGCTGGGTGGAAAGTCACCCCTTATCATCTTTGCTGACTGTGACCTCAACAA 2069
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2070 AGCTGTGCAGATGGGCATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACTGCATTGCGGCAGGCCGGCTCTTTG 2143
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2144 TGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCC 2217
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2218 CTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCAACG 2291
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2292 TGGTGTGAAGGAAGGGGCCACACTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAGCCAA 2365
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2366 CCGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAAGGAGGAGTCCTTCGGGCCCATCATGATCATCTCT 2439
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2440 CGGTTTGCTGATGGGGACGTGGATGCAGTGCTATCTCGGGCCAATGCTACAGAATTTGGCCTGGCCTCTGGTGT 2513
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2514 CTTCACTCGGGATATCAACAAGGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCACTGTGTTTGTCAACACAT 2587
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2588 ACAACAAGACCGATGTGGCCGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGCG 2661
Query 1516 --------------------------------------------- 1515
Sbjct 2662 GCCCTGAATGAGTACCTGCGGATCAAGACTGTGACTTTTGAGTAC 2706
