Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11582
- Subject:
- NM_001278429.3
- Aligned Length:
- 2040
- Identities:
- 1134
- Gaps:
- 753
Alignment
Query 1 -------------ATGACG-------CCCGCCCT---------CACAGCCCTG-------CTCTGCCTTG--GG 36
|||||| |||..||| |||| ||||| ||.||.|.|| ||
Sbjct 1 ATGGAACAACCCCATGACGAGAAGGACCCAGCCTCCAAGCGGCCACA-CCCTGTGTGTCTCTTTGTCCTGCCGG 73
Query 37 --CTGAG----------TCT---------GGGCCCC----AGGA------------CCCGCGTGCA-GGC---- 68
||||| ||| ||||||| |||| |||.|.|.|| |||
Sbjct 74 CACTGAGGACTCATCCATCTGCACAGCTGGGGCCCCTGGGAGGAGACGCCATGATCCCCACCTTCACGGCTCTG 147
Query 69 --------AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGT 134
.||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||.|.|.||
Sbjct 148 CTCTGCCTCGGGCCCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGT 221
Query 135 GACCATCTGGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAGCCCTTGG 208
||||||||||||||||||||.|||||||||.|.|||||||||.|||||||||||||.||||||||..||||.||
Sbjct 222 GACCATCTGGTGTCAGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATAAAGAGGAAAGCCCAGCACCCTGGG 295
Query 209 ACAGAAATAACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGCACCATGCGGGG 282
|||||.|.|||||||||||.||||||||||||||||||||||||||||||||||||||||||.||.||||.|||
Sbjct 296 ACAGACAGAACCCACTGGAGCCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGGACTATGCAGGG 369
Query 283 AGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGG 356
|||||||||||..|||||..||||.|||.||||||||||.|||||||.||||||||||||||||||||||||||
Sbjct 370 AGATACCGCTGTTACTATCGCAGCCCTGTAGGCTGGTCACAGCCCAGTGACCCCCTGGAGCTGGTGATGACAGG 443
Query 357 ATTCTACAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGAT 430
|..|||||..|||||||||||.|||||||||||.||.|||
Sbjct 444 AGCCTACAGTAAACCCACCCTTTCAGCCCTGCCGAGTCCT---------------------------------- 483
Query 431 GTGGCTCACAGAAGGGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGAC 504
Sbjct 484 -------------------------------------------------------------------------- 483
Query 505 TCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAACCCCAGCCACAGGTGGAG 578
Sbjct 484 -------------------------------------------------------------------------- 483
Query 579 GTTCACATGCTATTACTATTATATGAACACCCCCCAGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGC 652
Sbjct 484 -------------------------------------------------------------------------- 483
Query 653 CCTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACC 726
Sbjct 484 -------------------------------------------------------------------------- 483
Query 727 CTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCG 800
|||
Sbjct 484 --------------------------------------------------------------CTT--------- 486
Query 801 CCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGG 874
Sbjct 487 -------------------------------------------------------------------------- 486
Query 875 GCCAGTACAGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTG 948
Sbjct 487 -------------------------------------------------------------------------- 486
Query 949 ATGGCAGGACAGATCTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGT 1022
|||.||||||||.|||.|||
Sbjct 487 ------------------------------------------------------GTGACCTCAGGAAAGAGCGT 506
Query 1023 GACCCTGCTGTGTCAGTCATGGTGGCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCAC 1096
|||||||||||||||||||.||.|.|...|.||||||||.|||||||.|||.||..|||||||||||||||.||
Sbjct 507 GACCCTGCTGTGTCAGTCACGGAGCCCAATGGACACTTTTCTTCTGATCAAGGAGCGGGCAGCCCATCCCCTAC 580
Query 1097 TGCGTCTGAGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCAC 1170
|||.||||||||||..|.||||||||||..||.||||||||||||||||||||||||||||||||||||..|||
Sbjct 581 TGCATCTGAGATCAGAGCACGGAGCTCAGCAGCACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGTGCAC 654
Query 1171 GCGGGGACCTACAGGTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGA 1244
|.|||||||||||||||||.|.|||||.||.|||.|..||.|.||||||||||...|||||||||.||||||||
Sbjct 655 GGGGGGACCTACAGGTGCTTCAGCTCACACGGCTTCTCCCACTACCTGCTGTCACACCCCAGTGACCCCCTGGA 728
Query 1245 ACTCATGGTCTCAGGACACTCTGGAGGCT-CCAGCCTCCCACCCACAGGGCC-----------------GCCCT 1300
.|||||.|||||||||..|| ||||||.| ||||.|.|.||||||||.||.| |||||
Sbjct 729 GCTCATAGTCTCAGGATCCT-TGGAGGGTCCCAGGCCCTCACCCACAAGGTCCGTCTCAACAGCTGCAGGCCCT 801
Query 1301 -----------------------------------CCACACCTGGTCTGGGAAGATACCTGGAGGTTTTGATTG 1339
||||| .|||||||.||||..||..||||||..||||.|
Sbjct 802 GAGGACCAGCCCCTCATGCCTACAGGGTCAGTCCCCCACA-GTGGTCTGAGAAGGCACTGGGAGGTACTGATCG 874
Query 1340 GGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTCCTCCTCTTCCTCCTCCTCCGACGTCAGCGTCACAGCAAA 1413
||||||.|||||.||.|.|||||||.||||.|||||||||||||||||||||||.||....||||||..|.|||
Sbjct 875 GGGTCTTGGTGGTCTCCATCCTGCTTCTCTCCCTCCTCCTCTTCCTCCTCCTCCAACACTGGCGTCAGGGAAAA 948
Query 1414 CACAGGACATCTGACCAGAGAAAGACTGATTTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCCAAGGACAG 1487
||||||||||..|.|||||||.||.||||||||||.||||||.||||||||||.|||.||||||||||||||.|
Sbjct 949 CACAGGACATTGGCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCCCAAGGACGG 1022
Query 1488 GGGCCTGCTGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGAAGAAAACCTCT---ATGCTGCCGTGAAGGACA 1558
||||||.|.||||||||||||||||||||||||||||||||.|||||||.||| .|||||||||||||.|||
Sbjct 1023 GGGCCTACAGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTCAGGTGCTGCCGTGAAGAACA 1096
Query 1559 CACAGTCTGAGGACAGGGTGGAGCTGGACA---GTCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTAT 1629
|||||.||||||||.|||||||..|||||| |.|||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CACAGCCTGAGGACGGGGTGGAAATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTAT 1170
Query 1630 GCCCCGGTGAAACACTCCAGTCCTAGGAGAGAAATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTGGA 1703
|||..|||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1171 GCCAAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGA 1244
Query 1704 CACAAAGGACAGACAGGTGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGATG 1777
|||||||||||||||||..|||||||||||.|||||||||||||||||||||||||||||||||.|||||||||
Sbjct 1245 CACAAAGGACAGACAGGCAGAAGAGGACAGACAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATG 1318
Query 1778 TGACCTACGCCCAGCTGCACAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGAA 1851
||||||||||||.||||||||||||.|||||.||||.|||||||||||||||||||||||||||||||||||..
Sbjct 1319 TGACCTACGCCCGGCTGCACAGCTTTACCCTCAGACAGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGCC 1392
Query 1852 CCTCCAGCTGAGCCCAGCATCTACGCCACTCTGGCCATCCAC 1893
.||||||||||||||||..||||.||||||||||||||||||
Sbjct 1393 TCTCCAGCTGAGCCCAGTGTCTATGCCACTCTGGCCATCCAC 1434
