Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11582
- Subject:
- NM_001278430.3
- Aligned Length:
- 1894
- Identities:
- 668
- Gaps:
- 1133
Alignment
Query 1 ATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGCAGGGCC 74
||||..|||.||.||||.||.|||||||||||.|||||||||||||||||||||||||.|.|||||||||||||
Sbjct 1 ATGATCCCCACCTTCACGGCTCTGCTCTGCCTCGGGCTGAGTCTGGGCCCCAGGACCCACATGCAGGCAGGGCC 74
Query 75 CTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCTGGTGTC 148
|.|||||||||||||||||||||||||||||||||||||||||||||||||||.|.|.||||||||||||||||
Sbjct 75 CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGTGACCATCTGGTGTC 148
Query 149 AGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAGCCCTTGGACAGAAATAACCCA 222
||||||.|||||||||.|.|||||||||.|||||||||||||.||||||||..||||.|||||||.|.||||||
Sbjct 149 AGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATAAAGAGGAAAGCCCAGCACCCTGGGACAGACAGAACCCA 222
Query 223 CTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGCACCATGCGGGGAGATACCGCTGCCA 296
|||||.||||||||||||||||||||||||||||||||||||||||||.||.||||.||||||||||||||..|
Sbjct 223 CTGGAGCCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGGACTATGCAGGGAGATACCGCTGTTA 296
Query 297 CTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTACAACAAAC 370
||||..||||.|||.||||||||||.|||||||.|||||||||||||||||||||||||||..|||||..||||
Sbjct 297 CTATCGCAGCCCTGTAGGCTGGTCACAGCCCAGTGACCCCCTGGAGCTGGTGATGACAGGAGCCTACAGTAAAC 370
Query 371 CCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCACAGAAG 444
|||||||.|||||||||||.||.|||
Sbjct 371 CCACCCTTTCAGCCCTGCCGAGTCCT------------------------------------------------ 396
Query 445 GGATATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCAGCTCCA 518
Sbjct 397 -------------------------------------------------------------------------- 396
Query 519 CAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGAACCCCAGCCACAGGTGGAGGTTCACATGCTATT 592
Sbjct 397 -------------------------------------------------------------------------- 396
Query 593 ACTATTATATGAACACCCCCCAGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGCGTGTCT 666
Sbjct 397 -------------------------------------------------------------------------- 396
Query 667 AGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTGTGGCTC 740
Sbjct 397 -------------------------------------------------------------------------- 396
Query 741 TGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCCAGCAGC 814
|||
Sbjct 397 ------------------------------------------------CTT----------------------- 399
Query 815 CCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTACAGGTGC 888
Sbjct 400 -------------------------------------------------------------------------- 399
Query 889 TATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGGACAGAT 962
Sbjct 400 -------------------------------------------------------------------------- 399
Query 963 CTATGACACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTC 1036
|||.||||||||.|||.|||||||||||||||||
Sbjct 400 ----------------------------------------GTGACCTCAGGAAAGAGCGTGACCCTGCTGTGTC 433
Query 1037 AGTCATGGTGGCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCA 1110
|||||.||.|.|...|.||||||||.|||||||.|||.||..|||||||||||||||.|||||.||||||||||
Sbjct 434 AGTCACGGAGCCCAATGGACACTTTTCTTCTGATCAAGGAGCGGGCAGCCCATCCCCTACTGCATCTGAGATCA 507
Query 1111 ATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAG 1184
..|.||||||||||..||.||||||||||||||||||||||||||||||||||||..||||.||||||||||||
Sbjct 508 GAGCACGGAGCTCAGCAGCACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGTGCACGGGGGGACCTACAG 581
Query 1185 GTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAG 1258
|||||.|.|||||.||.|||.|..||.|.||||||||||...|||||||||.||||||||.|||||.|||||||
Sbjct 582 GTGCTTCAGCTCACACGGCTTCTCCCACTACCTGCTGTCACACCCCAGTGACCCCCTGGAGCTCATAGTCTCAG 655
Query 1259 GACACTCTGGAGGCT-CCAGCCTCCCACCCACAGGGCCGCCCTCCACACCTGGTCTGGGAAGATACCTGGAGGT 1331
||..|| ||||||.| ||||.|.|.||||||||.||.|
Sbjct 656 GATCCT-TGGAGGGTCCCAGGCCCTCACCCACAAGGTC------------------------------------ 692
Query 1332 TTTGATTGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTCCTCCTCTTCCTCCTCCTCCGACGTCAGCGTC 1405
||||
Sbjct 693 ----------------------------------------------------------------------CGTC 696
Query 1406 ACAGCAAACACAGGACATCTGACCAGAGAAAGACTGATTTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCC 1479
.|| |||| |||||| |||
Sbjct 697 TCA------ACAG-----------------------------------CTGCAG----------------GCC- 712
Query 1480 AAGGACAGGGGCCTGCTGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGAAGAAAACCTCTATGCTGCCGTGAA 1553
||||||| |||||| |||| ||||
Sbjct 713 ---------------CTGAGGA---CCAGCC-------------------------CCTC-ATGC--------- 733
Query 1554 GGACACACAGTCTGAGGACAGGGTGGAGCTGGACAGTCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGT 1627
|| ||||||| |||| |||||| ||||
Sbjct 734 -----------CT----ACAGGGT---------CAGT--------------------CCCCCA--CAGT----- 756
Query 1628 ATGCCCCGGTGAAACACTCCAGTCCTAGGAGAGAAATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTG 1701
|||||.
Sbjct 757 -------GGTGAG------------------------------------------------------------- 762
Query 1702 GACACAAAGGACAGACAGGTGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGA 1775
Sbjct 763 -------------------------------------------------------------------------- 762
Query 1776 TGTGACCTACGCCCAGCTGCACAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGG 1849
Sbjct 763 -------------------------------------------------------------------------- 762
Query 1850 AACCTCCAGCTGAGCCCAGCATCTACGCCACTCTGGCCATCCAC 1893
Sbjct 763 -------------------------------------------- 762
