Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- NR_145835.2
- Aligned Length:
- 6980
- Identities:
- 170
- Gaps:
- 6788
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGGCTTGGCGGCCGTTGTCTGTGGAGGGGGGCCTCGCCGGGCTCCCGGAGGCCGAGCGGTTCCTGTTGCATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAATCATGTCCTTGTGGTTACATATTTATTAGCAGAAAACTTTTAAATGCAAAACACTCAGAGAAATCACCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTACAGAAAACAAGCATGAGGCCAAGAGGAGGCGAACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTAAATAAAGATTTAGAAAACAGAAAGAGGTCTCGAAGTAACAGCCATTCAGATCATATCAGACGAGGAAGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGACCTAAAAGTGCATCTGCCAAAAAACATGAGGAAGAAAGAGGGTGCAGAAAACCTATGCCGAGGACTCCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTAGAAGGGAAACTAGGTAAAGAAAAGTCAGCAGAGAAAAAGGAAAAGAGAGAAATACTGCCTGGCTCAGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACAACATTCTTTTCAGTTGAAATAGAGGGAATGCAGCTGAAAGAAGAGAATGCTTCTGGTGAGAAACAGGAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGGAAATTGACATCTATGCTAACCTGTCTGATGAAAAGGCTTTCGTGTTTTCAGTCGCCTTGGCAGAAATAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAAAAATTATCAATCAAAGACTTATTCTCTGATACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATCAGCAAATTCTCAAACAGTTATGGACTCTCAGGAGCATTCTGACTGCATCAATAAGGGCCATCGATTGTTTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTCTCGCCTGTCGTTTAGCCTGTGCCACACTTCGGGAGCAAAGCTGTGTAGGCTTGGACTGTTCTGGGATTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTTGTTTACCAAGGAGTATTGTCAGTGTTTTGTGTTTGGGATATAAGTAAGTGTATTTGCCAACAACAAAAAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AACCAACAAAAATGCTGGATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGGTAGGTATGAAAACTAGGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AATAAGATGCTTGATTGTTTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATACTGTCAGAAAGAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAAAAATATATATTTCAGATTTTCAGTGCTAACAGATTGCATATATACAGTTCATTTACTTTTATTAAATTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAATCGATATTTTATTGAATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCTTTATTTTTATTACTTAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATATGAAGAAAAACATTTAATGATATACTCAGATATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTAAAAAAAAAAAACAAACTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAAATATATTTATTACATGCAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AATATTTCTTAGCCACTTTTAAGCAGTAATGTTTTATCTGAATGGATATTTGTTTCTATATCCTGATAATTATT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAAATTGTTACTTTCAATCTGGAAGAAAAAATAAACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGTTTTTTGTTCTGGTGAAGTTTGTGAAATATATTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATAGTTGATTTATATTAAATGCTTTTGCATTTTGGCATATCAATTTAATGATTAACATATTCAAACTTGGTAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCACTCCCCTTATTTTCAGTCGCTCTTCCCCCAATCTGTTTAGAAATCCTTTTAAAGCCTTCTTACAGAAGATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTCATCAGTTAGATTTAGCCCCCTTTTAAGAGAATCTCCCTTTCAATTTTAGCCGTAACATTATCAATTTCAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTTCATCCTGCATCTCCCATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCCTACTTTATTTAAATGGTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCAGCAGAGGGAGCTTAAGAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGATTCCTTTTCCTTTAATCCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTATCTATCTGCAGGTACTACTGCAACTATTTTGTATGCATTTTATTTATTTATTTAGGAGACAGAGTCTTGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCGGTCGCCCAGGCTGGAGTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTTATGCCTCAGCCTCCTGAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTTTTAGTACAGATGGGGTCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTAGTAGTTTCCCCAATAATGTAATGTGATTTTATCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAAAAGCTTAAAAATGATTAATATCTAAAAATGCTTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGTGGAATAAGCACGTCTTTAAGGAATTATCGATGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAAGTCATGTTAAAATATTCATTGGATATGGTAAAGGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAGTAATTACTTCAGATCTCATAATGTTAAATTATTGGCTTATTTAAAAATTTCCGTGGCAGAGAGGCAAATTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGTTTCCTCTGTGACATAACCTATTTAACCAATTTTTCAAAAAATTGTACTCTATGAGCTTTCTTGTTATAAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTAAAAAATTTAATTTGTCTAGGCATGTTGTAATGGTCCCAGAAAATATTACTTTGTCACTGGTGTCAGAGAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCTCTGTCATCAGCAGATGTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCAAAATTTGTTCTGCTCTGAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATCTATAAATGATATGATTATTCAAAATACCTTGAAATGATTCCACAATTAGATTAGGTCTGTTGAAGATAACT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TATTCTTAAATATGAGTAAGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGTATT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCAAAATGTTTTTGTGGGCACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGATTTTCATGGGTATTTTTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTGTGTAGTAATCAGTGGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GACCTGAAAATTTAGCCAGTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AGTATGACCTCTGAGTTGCTTCCTAAAAGTAATCAGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TATTTGACTTCTTTAACTCTAGTAATTGCACTTGATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AATTTTGGCTTGCCTTTCAATCTGCATGTTTGTCTTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATAT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAAGTATTAATTGGCCAGGCATGGTGGCTTACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCAACATGATGAGACCGCGTCTCTACAAAAAGTAAAATTAGCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGGTGTGGTGCTTCCAGCTACTAGGCAGCTGAGGCTAAAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AGTGATGATCTTGCCACTGCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTGTGTGAAAAAAGTATTGAAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTGTTTGATTCCACTTTCAAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAATTGTGTTCTTCTCTAAAAC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ATTTTGTCCGTCATTCTTTGAAACTCATTCTTAATTATTTCCACTTTACCTTCTAGTTTGGTTTGATGCCTTAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATTCTTGCTAGTTAAAAGCATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAAC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAATCTCTTATTTAAGTTAATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTTTTACATTTGGAAGTACATGTATATATGTTTATATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TTTTTAAATTATTCTTTTGTGCTGCCTTAACCCATTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GATTACAACTATACTAATAACTATCCTAACATACAAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAAC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGAGTCTGGAATAGAATAATTCTTTTTACCCCAGTCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTCTTTTATTGATAATTTCTATATTTTTTTCTTTGCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TGTAGGGGGGAAACATTCAGTCATTAAGCATTAAATAACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AGTAGATTGAGGGTAGACTCTTTTATTTCTGCTTGTTGGAAGTTTTCTGTCAGGAACAGATGTTGAATTTTGTC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGATGCTTTTTCTGCATAATTGATAGGACCTTTTTTCTCCCCTTTAGAATGTTCATATGGTGAAACATACTGAT 4810
Query 1 --------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTT 48
|.|||||||||||||||||||||||||||||||||.|||.|.||||||
Sbjct 4811 AGCTTTTCTTTTCTTTTTTTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTT 4884
Query 49 GGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG 122
|||||||||||.||||||||||.||||||||||| |||.|.||| ||||||||||||||.|||||..|||||
Sbjct 4885 GGCTCACTGCACCCTCTGCCTCTTGGGTTCAAGC--TTCCCTCAC--CAGCCTCCCAAGTACCTGGGTATACAG 4954
Query 123 ACGTGTGC--CACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTG 194
|||||| ||||||.||.||.|||||||||.|||||||||.||||..|..|||.|||||||||||||||.||
Sbjct 4955 --GTGTGCATCACCATGCCCGGCTAATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCTG 5026
Query 195 GTCT---------------------------------------------------------------------- 198
||||
Sbjct 5027 GTCTTCAACTCCTGACTCAGCCTCCCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAG 5100
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5101 TGGTGTGATCTTGGCTCAATGCAACCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTC 5174
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5175 CTGAGTAGCTGGAATTACAGGCGCACGCCACTACACCCAGCTTCTTTTTGTATTTTTAGTAGAGATGGAGTTTC 5248
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5249 ACCATGTTGGCCAAGCTGGTCTCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGT 5322
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5323 GCCCGGCTGCATTTCTCTTTTGTAAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTT 5396
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5397 CATTAATTTCTGATCTTTAGTATTTTCTCCTTTCTTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGT 5470
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5471 GGCGGAAGCTCAGATCATTGATTTTAAAATTTACTTATTTATTTATTTATTTATTTAATTCAACACTGATCAGA 5544
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5545 AGGCTTTTTGTGCTTTTCTAAAAAAAGCATTTAATGCTATAAATTTCCCATTTGCTTTATCTCACAAATTTTAT 5618
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5619 TGTGTTGTAATTTTGTGTTCAATTTAGAATATTCTGATTTTTCTTGGTATTACTATAATTTTCAAATATTTAGA 5692
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5693 GTTTTTTTCAGTTATCTTTCTGTTACTGATTGTAATTTATTGTTTTTTAAAATTATAGTTCTTTGAATAGTTTT 5766
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5767 GCAGTATTTGCTCTAGGGATTACTATAAACATACTTCACTTTTTACAGTTCACTTAGAAGTCAATATTTTACCA 5840
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5841 GTTCAAGTGGAATGTAGAAAAATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTATGTTATAATTTTC 5914
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5915 TTATAAATCATAAGACTTGGCTGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGCAGA 5988
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5989 TTGCTTAAGTCCAGGAGTTCGAGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAA 6062
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6063 TTAGCTAGGCGTGGTAGCATGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCC 6136
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6137 AGGAGGCAGAGGTTGCAGTGAGCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGT 6210
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6211 CTCAAAAAATAAAAATAAAAAATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTATCATAGATATTTTT 6284
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6285 AAGAACCCAAGAGGAAAACAGTCTATCACATTTACCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTT 6358
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6359 GATGTTCCAAGTTTACATAGGTATCAGTCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTT 6432
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6433 AATTCTCTTATTTTTTCTTCATCTGAGAATGTCTTTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATA 6506
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6507 TAAACTACTGTGTTGACAGTTCTTTCAGCCTCCATGGTTTCTGATGAGAAATGTGCAGCCATTAAAGTAATATT 6580
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6581 TCCCCTGTATGAAACATGTTATTTTTCTCTGAGTATTTTCAGGAATCTTTGTCTTTGGTTTTTATTGGTTTGAT 6654
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6655 TATGATGTGCCCGGGTGTTTGAATTTATTCTCTTTGGGATTTGTTGAGCTTAAATGTGTAAGTTTATGCCTTTC 6728
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6729 ATCAGATTATGTAAAGTTTTAAACCATTCAGATATTTTCTGCTCTACTTTCTCCTCCCTCTTAGGCTCCAGTGA 6802
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6803 TGCAAGTGTTAGACTCTTTGGTATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTTATTTTAATAAATC 6876
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6877 ATTTCAGTTAACAAAATCATATATTGTATGCAGCATGATGTTTCAATATGTATGTTCACATTGTAGGATGTCTA 6950
Query 199 ------------------------ 198
Sbjct 6951 AAGTAAAGATAATGAACATATGCA 6974
