Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- NR_145837.2
- Aligned Length:
- 7168
- Identities:
- 170
- Gaps:
- 6976
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGGCTTGGCGGCCGTTGTCTGTGGAGGGGGGCCTCGCCGGGCTCCCGGAGGCCGAGCGGTGGGCAGATCCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCCCGCCGGCGGCGGCGGGGATCCGGGGCCGGTCGGGCTGCACCGAGGGGTTTCCCGGGAAAAGCCCGGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGTGGCCCGCCAGCGTCCACCTGGCGGCGGCCAGACGGCCAAGCCCCTTCTTGCTGTGTCCCGGCCACTGGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCGCGCCTTTGGTGGGCTCACCGGGCGGCTGTCTGGAGCCCCAGACTCTCCTCGCCGGCGGCGGTGACAGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGGAGCCTGCGGGCCGCAGCCCCGGCGAGAGTGTGCCGCACGCCCGCCTCCGAGGCCAGGCCCTAGCTCCGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AACCCCTCCTGCGGCCGGGGCGGCTTTGTTCCCGGTTCCGACGGGTTCCTGTTGCATGTAAATCATGTCCTTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTTACATATTTATTAGCAGAAAACTTTTAAATGCAAAACACTCAGAGAAATCACCACCTTCTACAGAAAACAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCATGAGGCCAAGAGGAGGCGAACAGAGAGAGTTAGGAGAGAGAAGATAAATTCTACAGTAAATAAAGATTTAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAAACAGAAAGAGGTCTCGAAGTAACAGCCATTCAGATCATATCAGACGAGGAAGAGGAAGACCTAAAAGTGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCTGCCAAAAAACATGAGGAAGAAAGAGAGAAACAGGAAAAGGAAATTGACATCTATGCTAACCTGTCTGATGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGGCTTTCGTGTTTTCAGTCGCCTTGGCAGAAATAAATAGAAAAATTATCAATCAAAGACTTATTCTCTGAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAACATCAGCAAATTCTCAAACAGTTATGGACTCTCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGCATTCTGACTGCATCAATAAGGGCCATCGATTGTTTCTTTCTCGCCTGTCGTTTAGCCTGTGCCACACTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGGAGCAAAGCTGTGTAGGCTTGGACTGTTCTGGGATTTCCTTGTTTACCAAGGAGTATTGTCAGTGTTTTGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTGGGATATAAGTAAGTGTATTTGCCAACAACAAAAAAAAACCAACAAAAATGCTGGATGGATGTTAAAGGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAAAGTGATGGGGTATGGGGTAGGTATGAAAACTAGGGTAATAAGATGCTTGATTGTTTTCAGGTTTGCCACC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAGATGCAATATTTTAAATACTGTCAGAAAGAGTGATTTTTAAAAATATATATTTCAGATTTTCAGTGCTAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGATTGCATATATACAGTTCATTTACTTTTATTAAATTGGCAATCGATATTTTATTGAATGGGGAATTAAGAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTGGCCTTTATTTTTATTACTTAAGGTATGAGTTATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGCTATATGAAGAAAAACATTTAATGATATACTCAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAGCTAAAAAAAAAAAACAAACTGCTCTCAAGATGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCCTGTTAACCTAAACATGAAATATATTTATTACATGCAAAATATTTCTTAGCCACTTTTAAGCAGTAATGTTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATCTGAATGGATATTTGTTTCTATATCCTGATAATTATTTAAATTGTTACTTTCAATCTGGAAGAAAAAATAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAAAAGTTTTTTGTTCTGGTGAAGTTTGTGAAATATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTTTATAGTTGATTTATATTAAATGCTTTTGCATTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGCATATCAATTTAATGATTAACATATTCAAACTTGGTAATCACTCCCCTTATTTTCAGTCGCTCTTCCCCCAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGTTTAGAAATCCTTTTAAAGCCTTCTTACAGAAGATAGTCATCAGTTAGATTTAGCCCCCTTTTAAGAGAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCTCCCTTTCAATTTTAGCCGTAACATTATCAATTTCAGACTTCATCCTGCATCTCCCATCACCTCCTCAAAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAAAGGTCAACATTTTTTCCTACTTTATTTAAATGGTAACCAGCAGAGGGAGCTTAAGAGGTACTCTAGATAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GATAAAGAATTTTCCTAAGGATTCCTTTTCCTTTAATCCCTGTATCTATCTGCAGGTACTACTGCAACTATTTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTATGCATTTTATTTATTTATTTAGGAGACAGAGTCTTGCTCGGTCGCCCAGGCTGGAGTGCAGTGGCACTGTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTATGCCTCAGCCTCCTGAGTAGCTGTGACTAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTATTTTTTAGTACAGATGGGGTCTCAGCATGTTGGCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAACTAGTAGTTTCCCCAATAATGTAATGTGATTTTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTAAAAAAGCTTAAAAATGATTAATATCTAAAAATGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGCTTGTGGAATAAGCACGTCTTTAAGGAATTATCGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGGAAAGTCATGTTAAAATATTCATTGGATATGGTAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAAAAGTAATTACTTCAGATCTCATAATGTTAAATTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTGGCTTATTTAAAAATTTCCGTGGCAGAGAGGCAAATTAGGTTTCCTCTGTGACATAACCTATTTAACCAATT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTCAAAAAATTGTACTCTATGAGCTTTCTTGTTATAAAGCTAAAAAATTTAATTTGTCTAGGCATGTTGTAAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTCCCAGAAAATATTACTTTGTCACTGGTGTCAGAGAAACCTCTGTCATCAGCAGATGTCCTAAGAGTATAAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TATAGTTCTTTACTTAATCCAAAATTTGTTCTGCTCTGATATCTATAAATGATATGATTATTCAAAATACCTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AAATGATTCCACAATTAGATTAGGTCTGTTGAAGATAACTTATTCTTAAATATGAGTAAGATTAAATAAAAGTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGTATTCCAAAATGTTTTTGTGGGCACTTTAATACTTGTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTTAGATTTTCATGGGTATTTTTTGGCTGTATTTAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATTTCTTGTGTAGTAATCAGTGGAAGTGATCAAACAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAATGACCTGAAAATTTAGCCAGTCTATTCTTATTTCT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTCAGTATGACCTCTGAGTTGCTTCCTAAAAGTAATC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAGTATTTGACTTCTTTAACTCTAGTAATTGCACTTG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTTAATTTTGGCTTGCCTTTCAATCTGCATGTTTGTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATATAAAGTATTAATTGGCCAGGCATGGTGGCTTACAC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTTGTTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ACATGATGAGACCGCGTCTCTACAAAAAGTAAAATTAGCTGGGTGTGGTGCTTCCAGCTACTAGGCAGCTGAGG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CTAAAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGTGATGATCTTGCCACTGCACTCCAGCCTGGGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GGCAGAGCAAGAAACACCCTGTGTGAAAAAAGTATTGAATTTGTTTGATTCCACTTTCAAAATATGCTCTAGAT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 ACAGGTAGTCATTCTGCCAAATTGTGTTCTTCTCTAAAACATTTTGTCCGTCATTCTTTGAAACTCATTCTTAA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTATTTCCACTTTACCTTCTAGTTTGGTTTGATGCCTTATATTCTTGCTAGTTAAAAGCATTTTTTCCCTAGTA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAACAAATCTCTTATTTAAGTTAATTAAAGTTTTTTCT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCATTTTTACATTTGGAAGTACATGTATATATGTTTA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATTTTTTTAAATTATTCTTTTGTGCTGCCTTAACCCA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAAGATTACAACTATACTAATAACTATCCTAACATAC 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAACAGAGTCTGGAATAGAATAATTCTTTTTACCCCAG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTGTTCTTTTATTGATAATTTCTATATTTTTTTCTTT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 GCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGTTGTAGGGGGGAAACATTCAGTCATTAAGCATTAA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 ATAACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTTAGTAGATTGAGGGTAGACTCTTTTATTTCTGCTT 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GTTGGAAGTTTTCTGTCAGGAACAGATGTTGAATTTTGTCAGATGCTTTTTCTGCATAATTGATAGGACCTTTT 4958
Query 1 ------------------------------------------------------------------ATGGAGTC 8
|.||||||
Sbjct 4959 TTCTCCCCTTTAGAATGTTCATATGGTGAAACATACTGATAGCTTTTCTTTTCTTTTTTTTTTGACACGGAGTC 5032
Query 9 TCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGC 82
|||||||||||||||||||||||||||.|||.|.|||||||||||||||||.||||||||||.|||||||||||
Sbjct 5033 TCACTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCACCCTCTGCCTCTTGGGTTCAAGC 5106
Query 83 AATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGC--CACCATACCTGGGTAATTTTTGCA 154
|||.|.||| ||||||||||||||.|||||..||||| |||||| ||||||.||.||.|||||||||.|
Sbjct 5107 --TTCCCTCAC--CAGCCTCCCAAGTACCTGGGTATACAG--GTGTGCATCACCATGCCCGGCTAATTTTTGAA 5174
Query 155 TTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------ 198
||||||||.||||..|..|||.|||||||||||||||.||||||
Sbjct 5175 TTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACTCAGCCTCCCAAAGTGTT 5248
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5249 GGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGTGATCTTGGCTCAATGCAACCTTGCAACC 5322
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5323 TCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGAATTACAGGCGCACGCCACTAC 5396
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5397 ACCCAGCTTCTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGAG 5470
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5471 CTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGTGCCCGGCTGCATTTCTCTTTTGTAAGAACCTGCT 5544
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5545 CTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTTCATTAATTTCTGATCTTTAGTATTTTCTCCTTTC 5618
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5619 TTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGTGGCGGAAGCTCAGATCATTGATTTTAAAATTTAC 5692
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5693 TTATTTATTTATTTATTTATTTAATTCAACACTGATCAGAAGGCTTTTTGTGCTTTTCTAAAAAAAGCATTTAA 5766
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5767 TGCTATAAATTTCCCATTTGCTTTATCTCACAAATTTTATTGTGTTGTAATTTTGTGTTCAATTTAGAATATTC 5840
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5841 TGATTTTTCTTGGTATTACTATAATTTTCAAATATTTAGAGTTTTTTTCAGTTATCTTTCTGTTACTGATTGTA 5914
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5915 ATTTATTGTTTTTTAAAATTATAGTTCTTTGAATAGTTTTGCAGTATTTGCTCTAGGGATTACTATAAACATAC 5988
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5989 TTCACTTTTTACAGTTCACTTAGAAGTCAATATTTTACCAGTTCAAGTGGAATGTAGAAAAATCTTACCACTGT 6062
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6063 TTACATTCCTTTACCCTCTCCCCTTTATGTTATAATTTTCTTATAAATCATAAGACTTGGCTGGGCACAGTGGC 6136
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6137 TCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGCAGATTGCTTAAGTCCAGGAGTTCGAGACCAGCCTGGA 6210
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6211 CAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAATTAGCTAGGCGTGGTAGCATGTTCCTGTAGTCCC 6284
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6285 AGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCACTC 6358
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6359 CACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGTCTCAAAAAATAAAAATAAAAAATAAGACTCATCA 6432
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6433 GATAATGTATTTTTTCCTTACAACTATCATAGATATTTTTAAGAACCCAAGAGGAAAACAGTCTATCACATTTA 6506
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6507 CCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTTGATGTTCCAAGTTTACATAGGTATCAGTCCTTTT 6580
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6581 CATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTTAATTCTCTTATTTTTTCTTCATCTGAGAATGTCT 6654
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6655 TTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATATAAACTACTGTGTTGACAGTTCTTTCAGCCTCCA 6728
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6729 TGGTTTCTGATGAGAAATGTGCAGCCATTAAAGTAATATTTCCCCTGTATGAAACATGTTATTTTTCTCTGAGT 6802
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6803 ATTTTCAGGAATCTTTGTCTTTGGTTTTTATTGGTTTGATTATGATGTGCCCGGGTGTTTGAATTTATTCTCTT 6876
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6877 TGGGATTTGTTGAGCTTAAATGTGTAAGTTTATGCCTTTCATCAGATTATGTAAAGTTTTAAACCATTCAGATA 6950
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6951 TTTTCTGCTCTACTTTCTCCTCCCTCTTAGGCTCCAGTGATGCAAGTGTTAGACTCTTTGGTATTATCTCACAG 7024
Query 199 -------------------------------------------------------------------------- 198
Sbjct 7025 ATCTCAGAACCTCTGTTCATTTATTTTATTTTAATAAATCATTTCAGTTAACAAAATCATATATTGTATGCAGC 7098
Query 199 ---------------------------------------------------------------- 198
Sbjct 7099 ATGATGTTTCAATATGTATGTTCACATTGTAGGATGTCTAAAGTAAAGATAATGAACATATGCA 7162
