Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001737361.2
- Aligned Length:
- 6296
- Identities:
- 173
- Gaps:
- 6104
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGCAAGAACAGCACTGCTGGGCTGGAGACGGCGGGAGCCGCTGCTCTCCGGCTGAGGGAATCAGAGACAGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGTCCCTAGTGGAGCGCAGGGGAGGCAGAAGTCATGACAGGCGAGGTGGGTTCTGAGGTTCACCTAGAAATCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGACCCAAACGTCATTTCACAAGAGGAAGCAGATAGTCCTTCAGATAGTGGACAGGGCAGCTATGAAACAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACCCTTGAGTGAAGGAGATTCAGATGAAGAGATATTTGTAAGTAAGAAGTTGAAAAACAGGAAGGTTCTACA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACAGTGATTCCGAAACAGAGGACACAAATGCCTCTCCAGAGAAAACTACCTATGACAGTGCCGAGGAGGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATAAAGAGAATTTATATGCTGGGAAAAATACAAAAATCAAAAGGATTTACAAAACTGTGGCAGACAGTGATGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTTACATGGAAAAGTCTTTGTATCAGGAAAATCTTGAAGCGCAAGTGAAACCTTGCTTAGAGCTGAGTCTTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTCTGGAAACTCTACAGACTTTACCACTGACAGAAAGAGTTCCAAAAAGCACATACATGATAAAGAAGGAACTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGGAAAAGCAAAAGTAAAATCAAAAAGAAGACTTGAGAAAGAGGAGAGAAAAATGGAAAAAATTAGACAGCTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAAAGAAGGAAACAAAAAACCAGGAAGATGATGTAGAACAGCCATTTAATGACAGTGGCTGTCTTCTTGTGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAAAGACCTTTTTGAAACTGGGTTGGAGGATGAAAATAACTCTCCATTGGAAGATGAAGAGTCATTAGAATCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAAGAGCAGCTGTAAAAAACAAAGTAAAAAAGCACAAGAAAAAAGAACCATCTTTGGAGAGTGGGGTCCATTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTGAGGAAGGAAGTGAGTTATCAAAAGGAACCACGAGGAAGGAAAGAAAGGCAGCCAGATTAAGTAAAGAAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATTAAAACAACTGCATAGTGAGACTCAGCGCCTTATTCGAGAGTCTGCACTGAACCTTCCATATCATATGCCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAATAAAACCATTCATGATTTCTTCAAACGTAAACCCCGGCCCACTTGCCACGGAAATGCCATGGCACTATTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGTCATCTAAATATCAGTCAAGCCATCACAAAGAAATCATAGACACTGCAAATACTACTGAAATGAACAGTGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCACCATAGTAAAGGTTCTGAGCAGACAACAGGTGCAGAAAATGAAGTGGAAACTAATGCACTCCCTGTAGTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAAAGGAAACCCAGATCATTACTGGATCAGATGAGTCTTGCAGGAAGGATTTGGTAAAAAATGAAGAGCTAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATTCAGGAGAAACAGAAGCAGAGTGACATTAGACCTTCACCTGGGGACAGCTCAGTGTTGCAACAGGAATCCAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTCCTCGGGAACAATCACAGTGAGGAATGTCAGGTTGGAGGGCTTGTAGCATTTGAACCTCATGCCCTGGAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTGAAGGCCCCCAAAATCCAGAAGAAACAGATGAGAAAGTGGAAGAGCCTGAGCAGCAAAATAAATCATCAGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTGGGCCACCTGAAAAAGTGAGACGGTTTACTCTGGATAGACTTAAGCAACTGGGAGTAGATGTTTCCATTAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACCACGGCTAGGTGCTGATGAAGATTCCTTTGTGATACTTGAACCTGAAACCAACAGAGAACTGGAAGCCTTGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCAGCGTTTCTGGAAGCATGCTAATCCAGCAGCCAAACCCAGGGCTGGTCAGACAGTGAATGTGAACGTCATA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGAAAGACATGGGCACTGATGGAAAGGAAGAGCTAAAAGCAGATGTGGTACCTGTGACTTTAGCACCTAAGAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTGGATGGAGCAAGCCACACAAAACCAGGTGAAAAGCTTCAGGTGTTAAAAGCTAAACTGCAAGAAGCAATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACTCCGAAGGTTTGAGGAGCGCCAGAAGCGCCAAGCACTGTTTAAATTAGATAATGAAGATGGGTTTGAGGAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGGAGGAGGAAGAGGAAGAAATGACAGATGAGTCTGAGGAAGATGGAGAAGAGAAGGTAGAGAAAGAAGAGAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGAGGAAGAACTAGAGGAAGAGGAGGAGAAAGAAGAGGAGGAGGAAGAAGAAGGAAATCAGGAGACTGCAGAAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCTTCTTAGTAGTGAAGAAATAGAAACAAAAGATGAAAAAGAAATGGATAAAGAAAATAATGATGGCAGTAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAAATTGGCAAGGCAGTTGGCTTCCTCTCTGTTCCCAAGTCTCTCTCATCAGATTCTACTTTACTTCTGTTTAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGACAGCTCTTCCAAGATGGGTTACTTTCCTACTGAAGAAAAATCAGAAACAGATGAAAACTCAGGCAAGCAGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTAGCAAACTGGATGAGGATGATTCATGTTCATTGCTAACAAAGGAGAGCAGCCACAATAGCAGCTTTGAGCTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATTGGCTCCACGATTCCATCCTATCAGCCTTGCAACAGACAAACAGGCCGTGGGACCAGTTTTTTCCCTACAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGAGGATTCAGATCTCCTTCCCCTGGGCTATTTCGAGCCAGTTTGGTCAGCTCAGCTTCTAAGAGTTCAGGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AACTGTCTGAGCCTTCACTTCCCATAGAGGATTCCCAGGATCTGTATAACGCCTCCCCAGAGCCTAAGACACTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTCCTAGGAGCAGGAGACTTCCAGTTCTGTTTAGAAGATGACACTCAGAGCCAACTGTTGGATGCAGATGGGTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTAAATGTTAGAAACCACAGGAATCAGTACCAAGCTTTGAAGCCTCGATTGCCATTGGCCAGTATGGATGAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATGCCATGGATGCCAACATGGATGAGCTGTTGGATTTGTGTACTGGAAAGTTCACATCTCAGGCTGAAAAACAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTACCCAGGAAGAGTGACAAGAAAGAGAACATGGAGGAACTTCTGAACCTTTGTTCAGGAAAATTCACTTCTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGATGCCTCCACTCCAGCCTCATCAGAGTTAAATAAACAGGAGAAGGAGAGCAGCATGGGTGATCCAATGGAAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AAGCACTTGCTCTTTGCTCAGGCTCTTTTCCCACAGACAAGGAAGAGGAAGACGAGGAGGAGGAATTTGGAGAC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTTCGGCTTGTTTCAAATGATAATGAGTTTGATAGTGATGAGGATGAACACAGTGACTCTGGTAATGATCTGGC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACTGGAAGACCATGAAGATGATGATGAAGAAGAACTCCTGAAGCGATCTGAGAAGTTGAAAAGGCAAATGAGGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGAGGAAATACCTGGAGGATGAGGCAGAGGTGTCAGGAAGTGATGTGGGAAGCGAAGATGAGTATGATGGGGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAAATTGATGAATATGAAGAGGACGTAATTGATGAAGTACTTCCTTCTGATGAGGAACTGCAGAGTCAAATCAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GAAAATACACATGAAAACTATGTTGGATGATGATAAGCGACAGCTACGTTTATACCAAGAGAGGTACCTTGCTG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATGGGGATCTGCACAGCGATGGTCCTGGGCGAATGAGGAAGTTTCGATGGAAAAACATAGATGATGCTTCCCAG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATGGACTTGTTCCACAGAGACTCTGATGATGATCAGACTGAAGAACAGCTTGATGAGTCAGAAGCCAGGTGGAG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAAGGAGCGAATTGAACGAGAGCAGTGGCTTCGGGACATGGCACAGCAGGGGAAAATTACAGCTGAAGAAGAAG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAGAAATTGGGGAGGACAGTCAGTTTATGATACTGGCCAAGAAAGTTACAGCCAAAGCACTGCAGAAGAATGGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GAAGACAGGCTCACTGCTAAACCAGCCCAAAGCTGTGCTTCAGAAACTGGCTGCTCTCTCTGACCATAACCCCA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GTGCTCCTCGAAATTCAAGAAACTTTGTCTTTCATACACTTTCTCCTGTCAAGGCTGAGGCGGCAAAGGAATCG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TCTAAGTCTCAGGTAAAGAAAAGGGGTCCATCTTTCATGACTTCTCCTTCACCTAAGCACCTCAAAACAGATGA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TAGCACTTCAGGATTGACGCGAAGCATCTTCAAATATTTGGAGAGCTAACACCATCAAAGGTGCCAAAATCTAC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATTGAGACTGCTTTGAGAAGTTTCTAGCACTGAAAGTTGGAATTGACACTCCAGCCAATGATCCTTCCTTCTTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CATAATCAATGCAATAAGATTGCAGACAGAAATTCCAGTGATTTCTACTGCACAGCTCTGGACATCTCTTTTCC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TAGTATTATTCCCTGAATTGGCCACTGATTTCAATTCTGCAGTATTTACAACATCAACAACTCATGGAATACTT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GGGTGAGGTTTCCTTTTTTTTTTTTTTTTTAAGATGGGAGTCTCACTCTGTTGCCCAGCTTGGAGTGCAGTGGC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GTGATCTCGGCTCACCACAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTCCTTCAGCCTCCCGAGTAGCTGG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GATTACAGGCATGTGCCAATACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AGGCTGGTCTTGAACTCCTGACCTCAAATGATCCATCCACCTCGGCCCCACAAAGTGCTGGTCACATGCATGAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TCACTGCACCTGGCCTTGGGTTAGGTTTCACTTCCTCCATTAGACATTTGACATTTTATTGTAGCAGCTTTCTG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGTTAATATCTCTTTGTGATTGATAGAAGTGGTTGGAAGAGGAAGAGTAGGGAAAAGTGTGACATTACAGATTA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AACAGTGAAAATCAGTACCATAATGACTCCTTTACACCCATGAGATACGTACCATGATGACCAGGGCTCGGTGA 4810
Query 1 ----------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATC 46
|| |||||||||.|||..|||||.||||||||||||||||..|||
Sbjct 4811 AAGAAAGATTTCTTTTTTTTTTTTTGAGAT--AGTCTCACTTTGTTGCCCAGTCTGGAGTGCAGTGGCGCAATC 4882
Query 47 TTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTAC 120
|.|||||||.|||||||||||||||.|||||||||..|||||||...|||||||||||||||||||||||.|||
Sbjct 4883 TCGGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGACTAC 4956
Query 121 AGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAG--AGGGAGTTTCACCATGTTGGCCAG 190
|| ||| ||||||||.||||||.|||||||||.||||||||||||| |||||| ||||||||||||||||
Sbjct 4957 AG--GTGCATGCCACCACACCTGGCTAATTTTTGTATTTTTAGTGGAGACAGGGAG--TCACCATGTTGGCCAG 5026
Query 191 GTTGGTCT------------------------------------------------------------------ 198
|.||||||
Sbjct 5027 GCTGGTCTCGATCTCCTGACCTCAAGTGATCCAGCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGCGTGAG 5100
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5101 CCACTGTGCCCAGCCAAAAGAACGATTTCTTAGATGGAGGACCTAGGAACCAACAGATGGGCTGCTGTATTACT 5174
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5175 CTTACCCCTTTCATTTTCCTGTATGCTTCTTCCCAAGGCAGCATCAAATTTTGAATTAATTTTTGCTGCTTAAT 5248
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5249 AAGGACTTAAACTGGTACCCAAGTCAGAAAGACTCTGCCTCTAATTTTCTGGGGCTTGGGGATGAAGATAAAGT 5322
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5323 GTTACACCCAGTGTTTGTCCACCACAGTCTGTGGGGCAGAGAGACCCTTCCTGGGACTGAATTCTCAATTTGAA 5396
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5397 GCACTGTTGTTCAAAGATCTCCCTTCTGGGTCTGACAAGAAGAAACATAACCCTTATTTATTGCATTCTTCTGG 5470
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5471 CTTACATACATTGCCCTCACTAATCAATGGACATTTCAGCATTTCATTACTAATTTTGAGAGAAGGCCACCATG 5544
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5545 GAATTTAATAAAAATATTATTGAAGAGAATTGCCATCATTCTCCATTTTCCCTGAACTACCACAAGCTTCTCAG 5618
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5619 AATTTTAGACAAATGTTTTTCCCCTCAGAACTGAGCATCAGTGCTGCTTTGGAAAAACATTCCATGTGAATACT 5692
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5693 GTGGTTTCAGTGTCAGGACCTGTACTTGGGCAGTTGGAAGAGAGTGTGCCAGTTTTTTACTGGGAGATGGGAAC 5766
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5767 ACCAATTTAATTGATGCAATTAGGTTGTAGGTTTTTTACAGTTTTTCTTTTCTTTTCTTTTTCTTTTTCTTTTC 5840
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5841 TTTTCTTTTCTTTTTTTTTTTTTGAGACATAGGCTGGCTCTGTCACCTAGGCTGGAATACAATGGCATGATCTC 5914
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5915 GGCTTACTGCAACCTCCGCCTCCTAGGTTCAAGCAATTCTGCCTCGGCCTCCCAAATAGCAGGGATTACAGGCA 5988
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5989 CCTGCCACCACTCCCAGCTAATTTTTTGTATTTTTATTAGAGATGAGGTTTCGCCATGTTGGCCAGGCTGGTCT 6062
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6063 TGAACTCCTGACCTGAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGCA 6136
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6137 CCCGGCCGGTTTTCTACAGTTTTCTAATACTCAAGATGTTGACTTTGACAATACTTATGTTTGTATACTTGTAA 6210
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6211 TCTTATAATGGGGAAAATGTGTATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCTTAATGCCTTGA 6284
Query 199 ------ 198
Sbjct 6285 AGGGAA 6290
