Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001741932.1
- Aligned Length:
- 5799
- Identities:
- 160
- Gaps:
- 5620
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCTGCCTTGGGCTCCTGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTTTCAGATAAGTAGATATTAAGTGACTGACTGAGTAAAGGGATACACTGGATCTATGGAAGTCTTGATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGCTCTCCATTGTCCAGTCAGACTCCCTTTTCCATCTCCAGGGCAGACCAGGGCATGGTATAAACTGACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCCTTGTGTGTAATACAGTGTCTTCCTAGAGAGGGCGTCTGTCATTCCACCCCCAGGGACTGCTTGGCATCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGTGGCAGGGGCCATGCTGTTCCCCGCTGGGAGCACCATCCTACAGTAATCTCTGTGCAGGATGCTATTATAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGACTTGGGACTTTGTCCCCACTCTGCAACCTCACACCCCAAACTGGGAAGGTGCTGAGAAACCGAAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTCGGACAAGTCCAGCTTGGCCAGTAGATGACTCTATTGAGGGCCCTCCTGGGTGGCGGCAGGACAGCTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGTTCGCACTGCTGCCATCACTAAGCAAAGTCTCTGGTTCCTGGCCTGCTGTGTGTGATGGGACTGCCTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTAGGTTCCCAGATACTCCCAGGGACACACGCTCCTCGCTGGGCCCCCCTGGCCTTGGCTCCTTGCCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCAGGGTTCAGGCAGTGGACATCCACCCCACGTGACATGGTGGGACACCTGTCACACCACCGATGCCCCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATGGGCCACGCAACAGCCCTCGGGCCTTCCTGTCTCAGAGCAGGGCTGATCACAGTCAGGCCCACTGCAGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAGAAAGACTGTGCAGAGCTAGACGCTGGACTCGGATCCTCTCTAGCGTGGGACAGGCACTGGGCACCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCTGCAGTTCCTGAGAGAGGGCAGCCCCAGAGTCAGAATCAAGGTGTCAATAATAGGAGAAACGATGGTGGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGAGACCAAGGCATTAATATAGGAACTCTGTATACTTTCCAGTCAATTTTTCCATAAAACTAAAACTGCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAAGGAGTCTGTTAATTTTTTAAAATCTCAAAAAGAATGTGGCTGGTGCCACAATGAACAATTTGAGTGAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTACTCAACGAGGTCAGAGGCATCAGAGAGGAAGAACACAGCAGCCTGTTTTCTTTGCTGCTCTTTACCGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGAAAGAACACTTTTACAACAGACTCTGTTTGAGGACAAACGCTCCACATTTTTGCCCGCTGGCAGCAGTCATA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATTATGAGATTTCTGAGGGGCACAAAACTGCAGCGGTCTAAACCAGGCAACAAAAATCAGCCAAGTCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGGATCCCCTACAAATTCTATTGACTTTTTTGGATCTGTTTGTCCCTAGGTGTGAACTAGGGAAAAGTCAGGCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTCTGCCTTGCTAGTATATTTAAAAGAGGATCTTGGAGAATTTGAAAGAAAATGTGGAAGAAGAAATGACAGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGGTGAAAGTCAGCAGAAGGGCTTGATAATGGAACAGACTAAGGGTGGTGGATAGTTTTAAGGTTGAGAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAATGGAATTAAAAAAAAGGGAGATATTCCTGGGGGCTTGAAGCAAGAAGCAGCAGCCGAGAGCAGCGCTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGGATGTGAAGGGAGCTTGGTGCGGAGGGCAGTGCTTCCTATGAGAAAAAGTCCAGTGGTCAATCTTTTGGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGGAGCTGGTGGGATGAGGGGGCAGCTGGACTGACCTGAGTGCTGTTGTACTGTCTGACCATCTCCTTTGTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGACGCTCCACACTCATGCTCAGAGCAGCATTATTCACAGCAGCCAGGAGGGGGACGTCGCCCAGGTGTTCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGGTGGATGAATGGATAAAGAAAATGTAAACACACAGTGGAATCTTACTCAGCCTTGAAAAGGAAGGAAAGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATCCAACACATGCTACTGCATGGACGAACTTTGGACAGTGAGCTAAGTGAAAGGAGACAGTCACAAAAGGACAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCAGATGATCCCACCTGCGCGAGATGATGTTTGTCATATCTCCTGCATGGAGGAAAATTGCTTTCTGTAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTTGGTCCAACAGAACAAAACACCTATTTCTTTCCAGTTGGGAGGACAGCCATTCTCATCGGTATAATGAACG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TATTGTAAGCTGTGACTTTTACAAAGTCTGAGGGAAACCAATCTGCAATCTTGACAGATACGATCTTTCCAGAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCACTGTTCGTTTACGGCGGCAAGAGAGCTCAATTAATTTCTGAGGGAGGACGGCAGGATGCGACCCCTTGTGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTGGCCTAGGAGGAACTGTCCCTGTGTGAATTTATGTTCTGGTAATTTAAAAAGATTTATATTAAGCTTTTCTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCATTTTGAGAGTAGATTAAAATTCTAATGGAAACCATTTGTATGCATTTGTTGAATTGAAGAGTATTTATGGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGTGTAAAAAAAATGCTGCAAAATTCTGCCGATAATAAAGTCAGTGAAGCAAGAATAAGTGTAAAAACAGGAAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GAAATACGCGATAGAAACCATACTGTATTATACAAGTATAATGAGGGAGGCAAGCCGAGCAGAACGGGGCAGGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATTAGGCCCCCGGATGGGATAGTTTTTCTTATTTAGTGTAAGGCTTTTGTAGCCCTTTTATGACTTAAAACAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATTTAAATTTTGAAACAGGCCAGGTCAGTCTGCACAGACCCCATGGCCACATCACTGTGTCACATCATTCTTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACTCCTGCCGGTGTCTAGGACAAACAGGCAGGAAAGAAAATCCAAGCGGCGTCTCAGAGAAAAGATGCTGATGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAGGAAAAGAAGACCCATGAAACAGGAGGCGGGGGTCAGCGAGCAAGGTGAAAATCAGAGCCCCGGAGTGCAGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCAGGTGGAAGAGAGGTAGCAAAACCAGGGAAGTCGCCGTGCTCGGGACAGTCCAGTGTGTCCCTGGCATCCCC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGTCATTGCCGTGGCCACCTGATCAGAACCTGTACAGAAGCTGCCCCATCTCCTCCACGGTGAGGGCCAAGTTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CATGTGCCACAGCCCTGTCGGTGACCTTTCTGCGGGCTGGGGAAGCAGAGACAACGGCCTGACAATCTGCAGGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACAGCCATCCAAGGGGACAGGGTCCATGCAACAGCCACCAGAGAAAGCTCCTCACTGCCACCTTTGCAGAGGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAAAAGCAGAAAGCATCGTGGAGGCCCTTTATCATGTTGGAAGGCCAGAGACATTTGGCATTCCGTCAAGGTCC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATCTTAGAGTTGAGAGAGAGTTTCACCAGGAAACTCACATTCTCTCAGAACTAGCAGCCGTGATCGCATGTCGA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGTCAGGCAACGCCAAGCGTGATGGTTAACAGCGCTAAGACAGGAGAAAATGGAAATTCCCTGAGAGTCCACTG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTGCTCCTGCGGCGGTGCTTTTCCCCCTCGTTGTAAGCATGCTCTTTACCAGAGCTGCACGGATGTCATAAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTGCCTCACGATGCACTAGAGCAGAATCGTGCGTTAGCAAATTTCACAGATGCAAAGTGGGATTTCTGTCAATG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAAGCCTGCATGGAAAATACGGAACAGCTTAAGAAAGTACTGTCTTCTCTCAAAATTCCACAGGAGCCTGAAAT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GCAGGGGTTCCGGCCTAGGCGTTTTTTGAGGCAAATAACGTCGCCACACGGCCGAGATACAGGCCCCTTTTTGC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCCATGAGACTTACTGGCCTCAGAGTCCGGCCGCTTCTGTTTTGTTTCTTCATGTATCCTTGGCTTCTAGCGCA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GTTCCTGGTACACAGCAGGCGCTCAATACATATTTGCTGAGCTAAGCAAATATGTCCTAGGCCCTGTGGAAGAT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ACGACATGAGGAAGACCAGGTCCCTGCCAAAAAGGCACCGAGGGCCCAGGCTGGGGAGGGTAGTGCTGACATCG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AGTAGGCCTTCAGCTCTGACCCCAGCTTCATTTTAAGTGACTAGGAACAAATTCTCAAAACTTCTTTTCTATCA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ACTCTTCTTCACCCCCAATATCACAGCACAACTGTCTGTCATTGATGGAGTTCCTGCAATAAGACAAGCGCTAG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAGTTTACCATATTTGTATCCTTACTGGATTCCCAAATTAATCCTAGTAAGCAAGTGACATGATTGTTTTTAGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AGAGACAGGGTTTCACTTTGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCCAAAGTGCTGGGATTAGGAAAATGAATACTTTTGCAAGCACAATGACAGGAGTGTCAAAGGAGGTAGGCTCC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACACTCTGATGTCTCTTTATCAGTGAGGCCTTTTCTGACTCCCTCACATGAAGAGCAAACTCACTTCCCTTGTG 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CCAAAGCACTCAACATATATGACATCCCACACGGGGTAGGCTGAATCGTGGCCCTTAAAGTATGTCCATGTTCC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AATCCTTAGAACATGTGAATGTATTACCTTATGTGGCAAAATGGACTTTGCAGACATGATTAAGTTAAGGATCT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TGAGATTTCAGGAAAATTATCTTGGATCATTCAGGTAGGCCTGACATAATCACAAGAGCCCTTACAAGAGAGAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GCAGGAGGCCAGAGGCAGAGAGCTACACTGCGGAGCTGCTTTGCAGATGGAGGAAGGGGCCACCGAGACCTGAG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAAGTCAAGGAGACAGATTCTCCCCTGGAGCCTCCAGAGGGAACCAGCCCTGCTCACACCGTCATTTCAGCCCT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 GCAAGACTTGTTTGGGCTTCTGACGTCAAGAACTGGGACAGAATGAATTTGTGATGTTTTAGGCCACTAGATCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GTGGTAATGTGTTATAGCAGAAATAGGAAACTAACACAACTCATCTCTACTTGTGTATATGTTTGTTATCCGTC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TTCCTCTGCTGGGACATGAAATCCGCAACAAGTGGAGGCAAAGCCAGGGACTTTGTCTATTATGTTGACTGGCA 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TCCTTAGTGCTCAGAACAGAGCTCAGAATAATAAATATTTGTTGAATGAGCAAAGACGGAGGGGGCAGTCGCAG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 GAAGGGGGCCTACCGCGTGGCTAAGGGCCCTGAGGTATGAAAGATCTGAGATGCTGGTGGACGTGGCTGCTTCC 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 CGAGCTGAACTGGGGAAGTGGTGGGGAGGTGGGAGATGTCGGGGAGCTGATGCTGGGGCAGTTTATACTTTATT 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 CTGCAAATGAAGAATTATTGATGGGTTTCATGTAGAGTCATGATCATATTTCTTGATTGCGTTTTTTTTTTGTT 5254
Query 1 -----------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGC 51
|..|||||||||||||||.||.|||||||||||||||||.|.|||||||||
Sbjct 5255 TTGTTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTCTGTCGCCGAGGCTGGAGTGCAGTGGTGCGATCTTGGC 5328
Query 52 TCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACG 125
|||||||||||||.|||||||||.|||| |||.||||.||||||||||||||||| |
Sbjct 5329 TCACTGCAACCTCCGCCTCCTGGATTCA-----------------AGCTTCCCGAGTAGCTGGGATTACAG--G 5383
Query 126 TG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTC 197
|| |||||||||.||.||.|||||||||.|||||||||.||||.||||||||||||||||.|.||||.|||||
Sbjct 5384 TGCATGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTAGTCAGGCTGGTC 5457
Query 198 T------------------------------------------------------------------------- 198
|
Sbjct 5458 TCAAACTCCTGACCTCGTGATCCACCCACCTCAACCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGCGC 5531
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5532 CTGGCCTCCTGATTGCTTTTTAAGTAATTTTTTAAAAATAATTTTTCTCTTTATTATTAAATGTTAGAAATATA 5605
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5606 TGGAAACGTGGGCAAAAAGTAAAAATCACTCAAATCTCATTCCTAGAGTTAGTCACTATTAATATTTTGGTGTA 5679
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5680 TGTGTATTTCTTCCTTCAACATTCAGATTATATACTTTTTTGAAACTGGCTTTTTTCTCTTAATGTGAATTTCT 5753
Query 199 --------------------------- 198
Sbjct 5754 CCATGTCATTAAATATTCTCCTAAAAA 5780
