Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001746839.1
- Aligned Length:
- 7111
- Identities:
- 170
- Gaps:
- 6918
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGCTGGGATTACAGGCGTGAGCCACTGTGCCCAACCAGGTGTTCTTAAATATAATTTTTTATCTCCTTTCCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAGGGGTTTTTAGAACTGTTTGCTTGGCAGGTGAAGAATCTGCACGTTGTGGTTCTTTATTACTGAATGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATACCAGACTTTACCTTAGCTTTATTTGTTCCCCAGTTCAACGGAATTTAACCTTAGAATTTCCTAAAGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTTTCTAAAAGTTTTTTATTTCTCTAAGTGTCATAGTACTGCATTTATGAATCCCAAATTGGCTTCCACTGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATTTAAACTTGATATAAGATACAGGAAGATTATTTTGTCACCACCCTCTTTCTATTCCAAACACTATTTACAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGGAAACTTTAGTAAGAGAAGATATTTTGGAAAAGATTTTGTAACCAACTTACACTTGTGTCTGTTTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTTTTGGTTTAAATTCAAGGGGAGGCCAAGCGTGATGGCTCATGCCTGTAATCCTAACACTTCGGGAGGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACGGGTGGACCGCTTGAGCTCCGGAGTTCCAGAGGAGCCTGGGCAACATGGTGAAACCCTGTCTCTACCAAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATACAAAAACATTGCCCAGATGTGGTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGGTTGTAAAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAATCAACACTTAAGATTTTACTAAGAGATCATTCAACTTCAAATCTGAAGCACAAGAAGTCAGCAAAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGGCTATCATTGATTTGAGAATGGATTTTCACTTACATTTTAAATTAAATTGCTAACACTACAAAGTGTTTAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAAAACATGAACATTTCTGTTTTACTTCAGTTGTGAAGAGACTCTAATTTCCATCTCTGTTTAGAAATTCCTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGTGCAAATATAGGTTCTTTGCAAGCAGAACCACCAAGTAGTCCTTGGCACACAGAATTTATAAACCTAAAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGAATATTGAATGGAAAACTTAGAGAACAGTTGGAATGGGAGATACCATTATCCCAAGTCCAATGGTTGGTTAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAAATAGCTTTTCGATTCTCTCCAAATTAAGCTCACACCAACAGTTTTGTATTGTGAGGCAGCTGGTTCTGTTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTTTTCCTCCCCTGCTCTGCTCCTTCTCTGTCCTTCTGTAGCTGCAAGCCTCAGGGGTTGACCCACGCAGGCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCTCACTGATGTCCTTCTCTTGCTTTTGGTTGGATTTCGTCAGCAGGTGAAGCCCAGGGAGCAAAAAGAGGGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTTGCCAGATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCCCAGGAAGATGCCAGCTCCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCTTTCCCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCAACATCCCCTGTTGGTTCCTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCCCAGCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATCCTAGAAGAGTGTACCCTCCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTCCTGAAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAAAAATACTATAAATATTAAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTATAAGTAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAGTTTATAATTTTTAAACATAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACAATAAATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTATTTTTTAAATGTTGGAAAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTTGTCAGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAGTAGTCACAAGGAAAATAATC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGTCATATTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGTAATGTACAAATACTTCTTAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTAGATATGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAGAAAATAAAAAGTTCCTCTTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAGCTTCCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTCTTTTAAAGACTAACTTTATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTAGACATGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAGATATCTGTGCTAGACGTGCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CACAGGCATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTATTCCTTATTTGGAAATGTTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTACTTTTCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCTATTGCCTTTACCTGTTTAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAAGTTTTAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCTCCAGCCAATGGAGACAGGAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACAGTAGCAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTCCGGGGTGCTCTCGCCATTGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCCAACTGCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAGAATTAAATTTATGTTCGAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCTATTTCTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTTTACGTATAACAGTACTGAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATAACCATGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAATAATGGATAATATAATTATTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTTTTTCTAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGGACTTTCCATTCTAGAAGAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAGTGGCCATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAACAGAATTTAAAAATACATTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATCTCCATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTGACAGATATTTTTGGAGGGAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAAACGGTGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGACCGAGTGAGACAAGGTCCTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CACTGGAGAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATCACCACTCCTCTTGCCCCAGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCAGAGACTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCCAGACACAGGTGAGAGGAGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCTTTGCGCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGAAAGAAAGGAGGAAGAGAGAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGCCAGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCAGAGCTTGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGTGAGCCAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAACGTCTCAGAAAAAAAGAAAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAGAAAGGAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGCTTCTACATTGGTTATGCCAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CAGAAACAGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCTGGTGCATGACCTTTGCTTCT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCTTTGTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAACCTCAACTAAATGACATTGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGATAGAGACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTATAGTCAATGGTGGCCAGCCAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTTGTGTGTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAATTCTGGCCAGATACGTGGCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CACAACTGCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGCCAGAAGTTCGAGACCAGCCT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGCCAACAGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCGGGCATGGTGGCGCACGCCTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTATCCCAGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGTGGAGTTTGCAGTGAGCCAAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ATCATGCCACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAAAAAAAGAGCATGTTGTAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CTGTTCAGCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCACTGAGGAGTGATGATCACCA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTCTTTGGTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTGGAGCCTGAGCCTTTTGATTA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTTTAGGTTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATACTAAGCAATAATATCCTTGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TGCTCTTCTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACCCCTAACTCTCCTGGCTACCC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAAGGCCGGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTCTCAAATTCTGGTTTTGGGAG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TCTTCCAAAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGAGAAGTCCCAAACTGACAAAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CTGGGCTGTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATGGGAATAGAGCACCAAGCATA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ACCTGTTATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAATATCAGGAGAACAGAAGTTAG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGGAAACAGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTATTATTATTATTATTATTATT 4736
Query 1 -------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAC 61
| |||||||||.||||.||||||||||||||||.||||.|||||||||||||||||||.
Sbjct 4737 ATTATTTGAGACCA---AGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAAA 4807
Query 62 CTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG--ACGTGTGCCAC 133
||||||||.||||||||||||||||||....|||||||||||||||||||||||||||||| || ..|||||
Sbjct 4808 CTCTGCCTTCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTAC--CCGCCAC 4879
Query 134 CATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT--------- 198
||..||..|.|||||||||.|||||||||.||||.||.|||||||||||||||||||..||||||
Sbjct 4880 CAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCT 4953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4954 GACCTCAAGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCCACCGCACCTGGCCAG 5027
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5028 AATAAAACTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAATCTTTTATTACTATC 5101
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5102 ATCAGATAAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAGAAGAAAATCCTCAAA 5175
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5176 CAAAATTGTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGAAATTTCCCAGGAAGC 5249
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5250 AGAACAAAAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGAATCAATCCAGAAGGC 5323
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5324 CCTGATACCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAGTTGCATTGATAATAG 5397
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5398 TACTACTAACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGTATGAGTCTCTGGATT 5471
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5472 GAAAGGGCTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATATTGGCCTGAAATTTTC 5545
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5546 ATGTATTTGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGGTGGTCATTAGCCACG 5619
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5620 GCTGACTGTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAAAATAGACACTGAATT 5693
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5694 TTGGTGGGCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGAAAACATGTTGAAATG 5767
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5768 ATTTTGTATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTATGGCCCAGGCTG 5841
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5842 GAGTGCAGTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCCTC 5915
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5916 CTGAGTAGCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTC 5989
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5990 ACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGAT 6063
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6064 TACAGGCCTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTAAATATAACATATTATTA 6137
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6138 CAACTACTTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATGACATAGACGGTTTCTGT 6211
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6212 TCTGTGTCTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACACTGAGGCCAGAATGATAT 6285
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6286 CTGACCTTCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGAGAAATAGTTTTCAACCT 6359
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6360 TAGTAGTCTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCAAGCACACAAAAGTTTAC 6433
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6434 CTTCTTTGCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGTAAACCAATGGCATGGAA 6507
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6508 GGCATGGGATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCAGGTCCAGGAAGCAGACA 6581
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6582 AGCCCGTGCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGATTTGCTGACATAGGGAGT 6655
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6656 CTTCTGGCTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGATAATTTAAGAAAAAAGT 6729
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6730 TGTACTCTTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAACTCAAAGACTGTGTGGTA 6803
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6804 TGCTTACACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACATCTGTCAAGACAGGGAGA 6877
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6878 AAAAAGATAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAGGTAAATGGCAGAAGAAA 6951
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6952 TGGCTTAACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGGGAGCAATAGGGAGGGGA 7025
Query 199 -------------------------------------------------------------------------- 198
Sbjct 7026 GGCACAAGGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACATCAATTAAAATGATAAA 7099
Query 199 ------- 198
Sbjct 7100 TATTATA 7106
