Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001746840.1
- Aligned Length:
- 6539
- Identities:
- 170
- Gaps:
- 6346
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGCTGGGATTACAGGCGTGAGCCACTGTGCCCAACCAGGTGTTCTTAAATATAATTTTTTATCTCCTTTCCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAGGGGTTTTTAGAACTGTTTGCTTGGCAGGTGAAGAATCTGCACGTTGTGGTTCTTTATTACTGAATGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATACCAGACTTTACCTTAGCTTTATTTGTTCCCCAGTTCAACGGAATTTAACCTTAGAATTTCCTAAAGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTTTCTAAAAGTTTTTTATTTCTCTAAGTGTCATAGTACTGCATTTATGAATCCCAAATTGGCTTCCACTGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATTTAAACTTGATATAAGATACAGGAAGATTATTTTGTCACCACCCTCTTTCTATTCCAAACACTATTTACAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGGAAACTTTAGTAAGAGAAGATATTTTGGAAAAGATTTTGTAACCAACTTACACTTGTGTCTGTTTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTTTTGGTTTAAATTCAAGGGGAGGCCAAGCGTGATGGCTCATGCCTGTAATCCTAACACTTCGGGAGGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACGGGTGGACCGCTTGAGCTCCGGAGTTCCAGAGGAGCCTGGGCAACATGGTGAAACCCTGTCTCTACCAAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATACAAAAACATTGCCCAGATGTGGTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGCAGGTGAAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCAGGGAGCAAAAAGAGGGAGTTGCCAGATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGGAAGATGCCAGCTCCAGTGCTTTCCCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACATCCCCTGTTGGTTCCTTTAGCCCAGCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTAGAAGAGTGTACCCTCCATTTCCTGAAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAATACTATAAATATTAAATTTATAAGTAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTATAATTTTTAAACATAGACAATAAATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTTTAAATGTTGGAAAAATTTTGTCAGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAGTCACAAGGAAAATAATCAGTCATATTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATGTACAAATACTTCTTAATTAGATATGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAATAAAAAGTTCCTCTTCAAAGCTTCCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTAAAGACTAACTTTATGCTAGACATGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATATCTGTGCTAGACGTGCACACAGGCATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCCTTATTTGGAAATGTTATTACTTTTCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTGCCTTTACCTGTTTAAAAAAGTTTTAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCAGCCAATGGAGACAGGACACAGTAGCAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGGGGTGCTCTCGCCATTGTTCCAACTGCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATTAAATTTATGTTCGAGTGCTATTTCTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACGTATAACAGTACTGAATATAACCATGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATGGATAATATAATTATTACTTTTTCTAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACTTTCCATTCTAGAAGAAAGAGTGGCCATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAGAATTTAAAAATACATTACATCTCCATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAGATATTTTTGGAGGGAAGAAACGGTGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGAGTGAGACAAGGTCCTGGCACTGGAGAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCACTCCTCTTGCCCCAGGCCAGAGACTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGACACAGGTGAGAGGAGAGGCTTTGCGCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGAAAGGAGGAAGAGAGAAGGCCAGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAAATTAGCCGGGCGTGGTCGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACCCGGGAGGCAGAGCTTGCAGTGAGCCAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTCTCAGAAAAAAAGAAAGAAAGAAAGGAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTCTACATTGGTTATGCCAGCAGAAACAGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTGCATGACCTTTGCTTCTGACCTTTGTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCTCAACTAAATGACATTGGAGATAGAGACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGTCAATGGTGGCCAGCCAACTTGTGTGTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTCTGGCCAGATACGTGGCTCACAACTGCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAAGTTCGAGACCAGCCTGGCCAACAGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGCATGGTGGCGCACGCCTGTTATCCCAGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAGTTTGCAGTGAGCCAAGATCATGCCACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAAAAGAGCATGTTGTAATTCTGTTCAGCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTGAGGAGTGATGATCACCATTCTTTGGTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAGCCTGAGCCTTTTGATTATTTTAGGTTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTAAGCAATAATATCCTTGCTGCTCTTCTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CCTAACTCTCCTGGCTACCCAAAGGCCGGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCAAATTCTGGTTTTGGGAGTCTTCCAAAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GAAGTCCCAAACTGACAAACCTGGGCTGTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGAATAGAGCACCAAGCATAACCTGTTATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATCAGGAGAACAGAAGTTAGGGGAAACAGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTA 4144
Query 1 ---------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCG 41
| |||||||||.||||.||||||||||||||||.||||.
Sbjct 4145 TTATTATTATTATTATTATTATTATTTGAGACCA---AGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCA 4215
Query 42 TGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGG 115
|||||||||||||||||||.||||||||.||||||||||||||||||....|||||||||||||||||||||||
Sbjct 4216 TGATCTTGGCTCACTGCAAACTCTGCCTTCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGG 4289
Query 116 ATTACAG--ACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGC 187
||||||| || ..|||||||..||..|.|||||||||.|||||||||.||||.||.||||||||||||||||
Sbjct 4290 ATTACAGTTAC--CCGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGC 4361
Query 188 CAGGTTGGTCT--------------------------------------------------------------- 198
|||..||||||
Sbjct 4362 CAGACTGGTCTCAAACTCCTGACCTCAAGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCAT 4435
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4436 GAGCCACCGCACCTGGCCAGAATAAAACTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTC 4509
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4510 TAAAATCTTTTATTACTATCATCAGATAAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAA 4583
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4584 GAGAGAAGAAAATCCTCAAACAAAATTGTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATT 4657
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4658 AAAGAAATTTCCCAGGAAGCAGAACAAAAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTC 4731
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4732 AGAGAATCAATCCAGAAGGCCCTGATACCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTG 4805
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4806 AAGAGTTGCATTGATAATAGTACTACTAACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGC 4879
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4880 AGTGTATGAGTCTCTGGATTGAAAGGGCTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACA 4953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4954 TATATTGGCCTGAAATTTTCATGTATTTGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAA 5027
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5028 TATGGTGGTCATTAGCCACGGCTGACTGTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAG 5101
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5102 TGTAAAATAGACACTGAATTTTGGTGGGCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCAT 5175
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5176 TTTGAAAACATGTTGAAATGATTTTGTATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTC 5249
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5250 TCACTCTATGGCCCAGGCTGGAGTGCAGTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGC 5323
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5324 AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATT 5397
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5398 TTTAGTAGAGACGGAGTTTCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACCCACCTCG 5471
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5472 GCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGG 5545
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5546 CTAAATATAACATATTATTACAACTACTTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAG 5619
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5620 ATGACATAGACGGTTTCTGTTCTGTGTCTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGA 5693
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5694 CACTGAGGCCAGAATGATATCTGACCTTCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAG 5767
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5768 AGAGAAATAGTTTTCAACCTTAGTAGTCTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACAT 5841
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5842 GCAAGCACACAAAAGTTTACCTTCTTTGCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACT 5915
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5916 TGTAAACCAATGGCATGGAAGGCATGGGATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCA 5989
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5990 GCAGGTCCAGGAAGCAGACAAGCCCGTGCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTG 6063
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6064 GATTTGCTGACATAGGGAGTCTTCTGGCTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGG 6137
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6138 TGATAATTTAAGAAAAAAGTTGTACTCTTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTG 6211
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6212 AACTCAAAGACTGTGTGGTATGCTTACACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAA 6285
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6286 CATCTGTCAAGACAGGGAGAAAAAAGATAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGG 6359
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6360 AAGGTAAATGGCAGAAGAAATGGCTTAACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACC 6433
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6434 AGGGAGCAATAGGGAGGGGAGGCACAAGGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATAC 6507
Query 199 --------------------------- 198
Sbjct 6508 ACATCAATTAAAATGATAAATATTATA 6534
