Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11616
Subject:
XR_001746841.1
Aligned Length:
5920
Identities:
170
Gaps:
5727

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGGTGAAGCCCAGGGAGCAAAAAGAGGGAGTTGCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCCCAGGAAGATGCCAGCTCCAGTGCTTTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCAACATCCCCTGTTGGTTCCTTTAGCCCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATCCTAGAAGAGTGTACCCTCCATTTCCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAAAAATACTATAAATATTAAATTTATAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAGTTTATAATTTTTAAACATAGACAATAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTATTTTTTAAATGTTGGAAAAATTTTGTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAGTAGTCACAAGGAAAATAATCAGTCATA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGTAATGTACAAATACTTCTTAATTAGATA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAGAAAATAAAAAGTTCCTCTTCAAAGCTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTCTTTTAAAGACTAACTTTATGCTAGACA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAGATATCTGTGCTAGACGTGCACACAGGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTATTCCTTATTTGGAAATGTTATTACTTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCTATTGCCTTTACCTGTTTAAAAAAGTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCTCCAGCCAATGGAGACAGGACACAGTAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTCCGGGGTGCTCTCGCCATTGTTCCAACT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAGAATTAAATTTATGTTCGAGTGCTATTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTTTACGTATAACAGTACTGAATATAACCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAATAATGGATAATATAATTATTACTTTTTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGGACTTTCCATTCTAGAAGAAAGAGTGGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAACAGAATTTAAAAATACATTACATCTCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTGACAGATATTTTTGGAGGGAAGAAACGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGACCGAGTGAGACAAGGTCCTGGCACTGGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATCACCACTCCTCTTGCCCCAGGCCAGAGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCCAGACACAGGTGAGAGGAGAGGCTTTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGAAAGAAAGGAGGAAGAGAGAAGGCCAGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTCGCGGGCG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAACGTCTCAGAAAAAAAGAAAGAAAGAAAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGCTTCTACATTGGTTATGCCAGCAGAAAC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCTGGTGCATGACCTTTGCTTCTGACCTTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAACCTCAACTAAATGACATTGGAGATAGA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTATAGTCAATGGTGGCCAGCCAACTTGTGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAATTCTGGCCAGATACGTGGCTCACAACT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGCCAGAAGTTCGAGACCAGCCTGGCCAAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCGGGCATGGTGGCGCACGCCTGTTATCCC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGTGGAGTTTGCAGTGAGCCAAGATCATGC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAAAAAAAGAGCATGTTGTAATTCTGTTCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCACTGAGGAGTGATGATCACCATTCTTTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTGGAGCCTGAGCCTTTTGATTATTTTAGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATACTAAGCAATAATATCCTTGCTGCTCTT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACCCCTAACTCTCCTGGCTACCCAAAGGCC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTCTCAAATTCTGGTTTTGGGAGTCTTCCA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGAGAAGTCCCAAACTGACAAACCTGGGCT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATGGGAATAGAGCACCAAGCATAACCTGTT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAATATCAGGAGAACAGAAGTTAGGGGAAAC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTATTATTATTATTATTATTATTATTATTT  3552

Query    1  ------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCC  68
                  |   |||||||||.||||.||||||||||||||||.||||.|||||||||||||||||||.|||||||
Sbjct 3553  GAGACCA---AGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAAACTCTGCC  3623

Query   69  TCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG--ACGTGTGCCACCATACCT  140
            |.||||||||||||||||||....||||||||||||||||||||||||||||||  ||  ..|||||||..||.
Sbjct 3624  TTCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTAC--CCGCCACCAAGCCC  3695

Query  141  GGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----------------  198
            .|.|||||||||.|||||||||.||||.||.|||||||||||||||||||..||||||                
Sbjct 3696  AGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCA  3769

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3770  AGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCCACCGCACCTGGCCAGAATAAAA  3843

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3844  CTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAATCTTTTATTACTATCATCAGAT  3917

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3918  AAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAGAAGAAAATCCTCAAACAAAATT  3991

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3992  GTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGAAATTTCCCAGGAAGCAGAACAA  4065

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4066  AAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGAATCAATCCAGAAGGCCCTGATA  4139

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4140  CCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAGTTGCATTGATAATAGTACTACT  4213

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4214  AACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGTATGAGTCTCTGGATTGAAAGGG  4287

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4288  CTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATATTGGCCTGAAATTTTCATGTATT  4361

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4362  TGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGGTGGTCATTAGCCACGGCTGACT  4435

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4436  GTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAAAATAGACACTGAATTTTGGTGG  4509

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4510  GCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGAAAACATGTTGAAATGATTTTGT  4583

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4584  ATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTATGGCCCAGGCTGGAGTGCA  4657

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4658  GTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTA  4731

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4732  GCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATAT  4805

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4806  TGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC  4879

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4880  CTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTAAATATAACATATTATTACAACTAC  4953

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4954  TTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATGACATAGACGGTTTCTGTTCTGTGT  5027

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5028  CTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACACTGAGGCCAGAATGATATCTGACCT  5101

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5102  TCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGAGAAATAGTTTTCAACCTTAGTAGT  5175

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5176  CTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCAAGCACACAAAAGTTTACCTTCTTT  5249

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5250  GCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGTAAACCAATGGCATGGAAGGCATGG  5323

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5324  GATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCAGGTCCAGGAAGCAGACAAGCCCGT  5397

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5398  GCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGATTTGCTGACATAGGGAGTCTTCTGG  5471

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5472  CTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGATAATTTAAGAAAAAAGTTGTACTC  5545

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5546  TTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAACTCAAAGACTGTGTGGTATGCTTAC  5619

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5620  ACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACATCTGTCAAGACAGGGAGAAAAAAGA  5693

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5694  TAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAGGTAAATGGCAGAAGAAATGGCTTA  5767

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5768  ACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGGGAGCAATAGGGAGGGGAGGCACAA  5841

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5842  GGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACATCAATTAAAATGATAAATATTATA  5915

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