Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001746841.1
- Aligned Length:
- 5920
- Identities:
- 170
- Gaps:
- 5727
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGGTGAAGCCCAGGGAGCAAAAAGAGGGAGTTGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCCCAGGAAGATGCCAGCTCCAGTGCTTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCAACATCCCCTGTTGGTTCCTTTAGCCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATCCTAGAAGAGTGTACCCTCCATTTCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAAAAATACTATAAATATTAAATTTATAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAGTTTATAATTTTTAAACATAGACAATAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTATTTTTTAAATGTTGGAAAAATTTTGTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAGTAGTCACAAGGAAAATAATCAGTCATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGTAATGTACAAATACTTCTTAATTAGATA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAGAAAATAAAAAGTTCCTCTTCAAAGCTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTCTTTTAAAGACTAACTTTATGCTAGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAGATATCTGTGCTAGACGTGCACACAGGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTATTCCTTATTTGGAAATGTTATTACTTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCTATTGCCTTTACCTGTTTAAAAAAGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCTCCAGCCAATGGAGACAGGACACAGTAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTCCGGGGTGCTCTCGCCATTGTTCCAACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAGAATTAAATTTATGTTCGAGTGCTATTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTTTACGTATAACAGTACTGAATATAACCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAATAATGGATAATATAATTATTACTTTTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGGACTTTCCATTCTAGAAGAAAGAGTGGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAACAGAATTTAAAAATACATTACATCTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTGACAGATATTTTTGGAGGGAAGAAACGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGACCGAGTGAGACAAGGTCCTGGCACTGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATCACCACTCCTCTTGCCCCAGGCCAGAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCCAGACACAGGTGAGAGGAGAGGCTTTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGAAAGAAAGGAGGAAGAGAGAAGGCCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTCGCGGGCG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAACGTCTCAGAAAAAAAGAAAGAAAGAAAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGCTTCTACATTGGTTATGCCAGCAGAAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCTGGTGCATGACCTTTGCTTCTGACCTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAACCTCAACTAAATGACATTGGAGATAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTATAGTCAATGGTGGCCAGCCAACTTGTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAATTCTGGCCAGATACGTGGCTCACAACT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGCCAGAAGTTCGAGACCAGCCTGGCCAAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCGGGCATGGTGGCGCACGCCTGTTATCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGTGGAGTTTGCAGTGAGCCAAGATCATGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAAAAAAAGAGCATGTTGTAATTCTGTTCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCACTGAGGAGTGATGATCACCATTCTTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTGGAGCCTGAGCCTTTTGATTATTTTAGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATACTAAGCAATAATATCCTTGCTGCTCTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACCCCTAACTCTCCTGGCTACCCAAAGGCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTCTCAAATTCTGGTTTTGGGAGTCTTCCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGAGAAGTCCCAAACTGACAAACCTGGGCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATGGGAATAGAGCACCAAGCATAACCTGTT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAATATCAGGAGAACAGAAGTTAGGGGAAAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTATTATTATTATTATTATTATTATTATTT 3552
Query 1 ------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCC 68
| |||||||||.||||.||||||||||||||||.||||.|||||||||||||||||||.|||||||
Sbjct 3553 GAGACCA---AGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAAACTCTGCC 3623
Query 69 TCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAG--ACGTGTGCCACCATACCT 140
|.||||||||||||||||||....|||||||||||||||||||||||||||||| || ..|||||||..||.
Sbjct 3624 TTCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTAC--CCGCCACCAAGCCC 3695
Query 141 GGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT---------------- 198
.|.|||||||||.|||||||||.||||.||.|||||||||||||||||||..||||||
Sbjct 3696 AGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCA 3769
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3770 AGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCCACCGCACCTGGCCAGAATAAAA 3843
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3844 CTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAATCTTTTATTACTATCATCAGAT 3917
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3918 AAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAGAAGAAAATCCTCAAACAAAATT 3991
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3992 GTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGAAATTTCCCAGGAAGCAGAACAA 4065
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4066 AAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGAATCAATCCAGAAGGCCCTGATA 4139
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4140 CCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAGTTGCATTGATAATAGTACTACT 4213
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4214 AACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGTATGAGTCTCTGGATTGAAAGGG 4287
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4288 CTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATATTGGCCTGAAATTTTCATGTATT 4361
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4362 TGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGGTGGTCATTAGCCACGGCTGACT 4435
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4436 GTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAAAATAGACACTGAATTTTGGTGG 4509
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4510 GCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGAAAACATGTTGAAATGATTTTGT 4583
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4584 ATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTATGGCCCAGGCTGGAGTGCA 4657
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4658 GTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTA 4731
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4732 GCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATAT 4805
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4806 TGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 4879
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4880 CTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTAAATATAACATATTATTACAACTAC 4953
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4954 TTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATGACATAGACGGTTTCTGTTCTGTGT 5027
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5028 CTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACACTGAGGCCAGAATGATATCTGACCT 5101
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5102 TCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGAGAAATAGTTTTCAACCTTAGTAGT 5175
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5176 CTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCAAGCACACAAAAGTTTACCTTCTTT 5249
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5250 GCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGTAAACCAATGGCATGGAAGGCATGG 5323
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5324 GATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCAGGTCCAGGAAGCAGACAAGCCCGT 5397
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5398 GCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGATTTGCTGACATAGGGAGTCTTCTGG 5471
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5472 CTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGATAATTTAAGAAAAAAGTTGTACTC 5545
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5546 TTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAACTCAAAGACTGTGTGGTATGCTTAC 5619
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5620 ACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACATCTGTCAAGACAGGGAGAAAAAAGA 5693
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5694 TAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAGGTAAATGGCAGAAGAAATGGCTTA 5767
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5768 ACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGGGAGCAATAGGGAGGGGAGGCACAA 5841
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5842 GGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACATCAATTAAAATGATAAATATTATA 5915
