Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_002956167.1
- Aligned Length:
- 5240
- Identities:
- 167
- Gaps:
- 5049
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGTCTGCGCAGGGACTGGCGGGACTGCGCGGCGGCAACAGCAGACATGTCGGGGGTCCGGGGCCTGTCGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGCTGAGCGCTCGGCGCCTGGCGCTGGCCAAGGCGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCATTTCTGCTCAGTATCCAGTAGTGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCACAGGGAGGAATCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGGGGGACCAGGATGCCATCCACTACATGACGGAGCAGGCCCCCGCCGCCGTGGTCGAGCTAGAAAATTATGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACTGGCCACTCGCTATTGCACACCTTATATGGAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTCTCTGCGATATGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATAAGAGCAAAGAACACTGTTGTTGCCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACTGGCGACGGCACGGCCATGATCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCTACAGGCATATATGGTGCTGGTTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCCATGACTCTGGAGATCCGAGAAGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGCGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTGCCTGGCATTTCAGAGACAGCCATGATCTTCGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTCCTGAGGCACGTGAATGGCCAGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGTCAATGCAAAATCATGCTGCCGTGTTCCGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCAGCAAGCTCTATGGAGACCTAAAGCACCTGAAGACGTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGACCGGGGAATGGTCTGGAACACGGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTACAAGGTGGGCCTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCACCACGCCCACCTGCACCTGCCTTTTCCTGCCACCTGGTGGGACTCAGCCCCACCCCTGCATTTTCTCTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATTTTCTTTCGTTGCCCCAAAAGTAAATCCAAAAAATGCCTTTTTCCCCCCTGGTAACTTTGATCCCTGGGTTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCGCCATCTTCTGGATCACTGTGACCTTTTCCTTGCTTTGGGTCGGCATCCACTGATGCCAGCAGTGGCATCTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAGAAGTGCAGCTAGAGTGGCAAGACCAGGAAATAAATG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTTTATTAAATAACGAGTAAGCCATCATTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTGCCCTGTGGTGGAAATGCCAGTTTATTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATAACGAGTAAGCCACTGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGTCACTGTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCAAACCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAATAAGCCACCGTTTCAAACCTGCCCTGTGAAGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AATGCCAGTTTATTAAATAAGGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAATAAGGAGTAAGCCACCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCATTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATTAACGAGTAAGTCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTAGTAACGAGTAAGTCACCGTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTAAGCCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGTGCCAGTTTATTAAATAATGAGTAAGTCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAACGAGTAAGTCACCGTTTCATACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGACCTGCCCTGTGGAGGAAAATGCCAGTTTATTAACAAGTAAGTCACTGTTTCAGACCTGCCCTGTGGATGAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATGCCAGTTTATTAATGAGTAAGTCACCATTTCAGACCTGCGCTGTGGAGGAAATGCCAGTTTATTAAATAAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGTAAGCCACCATTTCAGACCTGTCCTGTGGTTTGGAAAAGGTATTATAGAGCCTGCCCTGTGGTCACTTGTTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTCAGATGAACTGATTTTTGTGCAGAGCGCACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCCCATATGATAGC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAAAAACGACGGAAAGGGAAGCTTGGGATGCAAATGCAAGTTCAGGATAAACCACATCAGCAAAAGGACAAAGG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTCCACAAGGCAGGCGCACAGGCTGGTTCAGGACCGTGTGTAGGCGGCTGGTGGCAGCCTTTCCAGTCAGCTGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ACATGGTGAATGGGAAAATCATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCACTAGAATATGCTGAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GGCTGTGATCACTGCTCAGAACTTGCTCTTGTCTCCTTGTATGTATTAAGAGTTTCCTGCAAAGTATATGAATC 3774
Query 1 ------------------------------------------------------------ATGGAGTCTCACTC 14
|.|||.||||| |
Sbjct 3775 CGTGTTTGCCAGAATACAGAATAATAGTAAATTTATTATTTTTATTTTTATTTTTTTGAGAAGGAATCTCA--C 3846
Query 15 TGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCT 88
||||.||||||||||||||||||||||||||||..||||||||||||||||||||||.|||||||||..|||||
Sbjct 3847 TGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCT 3920
Query 89 CCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGAC-GTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAG 161
||..|||||||||||||||.|||||||||||||||| ...|||||||||.||| |.|||||.|||||.||
Sbjct 3921 CCTGCCTCAGCCTCCCAAGCAGCTGGGATTACAGACACACTGCCACCATGCCT-----AATTTTGTATTTTCAG 3989
Query 162 TGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------- 198
|.||||.||.||||||||||.||||||.||.||||||
Sbjct 3990 TAGAGATGGGGTTTCACCATATTGGCCGGGCTGGTCTCGAACTCCTGACCTCAAGTGAACCACCCACCTCGGCC 4063
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4064 TCCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCTGGCCAGTGCATAAATTTAGTTGGTCACAGTCAGT 4137
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4138 TTTAATTAGAATAGAAGCCAGGTGCAGTGCCTCACACCTGTAATCCCAGCATTTGGGAGGCTGAGGCAGGCCAA 4211
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4212 TGACTTGAGCCCCAGAGTTGTAGACCAGCCTGGGCAACATGGCGAAACGTGTCTCTACAAAAACATAAAAAATG 4285
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4286 AGCCAGGTGTGGTGGTAGCACAGGAGGCTGAGGCAGGAGGATTGATTGAGCCTGGGAAGTCAAGGCTCCGGCAA 4359
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4360 GCTGTGATCACACCACTGCACTCCAGCCCAGGTGACATAGCCAGACCCTGTCTCAAAAAAAAAATTTTTTTTTA 4433
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4434 ATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTCTCCCAGCACATGGAGCAAAAAGACAAAGTATTTGATAAA 4507
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4508 CTCTTAGGTACATAAAGGATGCTTAAGGGAACATGCGGACATGGATTACTGTGGACTCACTGCTGGCTGCACAC 4581
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4582 CCCCTGGCCAGCCATGCGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCAACCTCCTGGGCTGAAGTGGAAA 4655
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4656 TGGAATGAGTTCTAGGGCATCTGTCTCTTAGATCATGTTAATGTCTGCTGTGTTTTTTCTGTATTGCTCTGTTA 4729
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4730 GAGTAATAAGAAACGTGATGGTGTTTCTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCA 4803
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4804 GGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGA 4877
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4878 AGGTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCC 4951
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4952 ATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGC 5025
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5026 ATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGAGTACATTGAAGGGAGATTGG 5099
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5100 CACCTAGTGGCTGGGAGCTTGCCAGGAACCCAGTGGCCAGGGAGCGTGGCACTTACCTTTGTCCCTTGCTTCAT 5173
Query 199 ------------------------------------------------------------ 198
Sbjct 5174 TCTTGTGAGATGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTC 5233
