Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_002957735.1
- Aligned Length:
- 5862
- Identities:
- 178
- Gaps:
- 5664
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGAATGTGAAAGTGATGGTGCTCTAAAAATCAATCTGGAAGCAGATCTGCCAACATAAGAATGTGGTTGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGAGTCTAACCAGGAAAAGGAGAGATGCGAACTCGCTCCCCCTCCCCTCTCGCCATCGTCCCCCGCCCCCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGCAAGCCGCCCCCTGCTCTGCGCTGTCTCTCCAATGGCGTCTGCCTCCGGGGCCACGGCGAAGCACGAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCCTGGTCCTCGACCCGCCCATAGACCTCAAATTCAAAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTGCGAAATCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACCGTGCCTCACCGGTACTGTGTGAGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAACAGTGGAATTATTGACCCAGGGTCAACTGTGACTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATGAAAAGAGTAAACACAAGTTTATGGTACAATTTTTGCTCCACTAAACACTTCAGATATGGAAGCTGTGTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AATGAGGCAAAACCTCATGAATTAATGGATTCCAAATGGAGATCCCCAATGAAAATGATAAATTGAATGACATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAACCCAGCAAAGCTGTCCCACTGAATGCATCTAAGCAAGACGGGCCCACGCCACAACCACACAGTGCTTCACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATGATACTGAAACAAGGAAACTAACAGAAGAGTGTAAAAGACTTCAGGGAGAAATGATGAAGCTATCAGAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAATCAACACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCATATTCGGATAAACCTGGATCAACCTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTGCATCCTTCAGAGATGTCACCAGTCTTCTTCCTTCACTTCTTGTTGTAATTGCAGCCATTTTCACTGGATT 888
Query 1 ------------------ATGGAGTCTCACTC-TGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCAC 55
|.|||||||||||| |||..|||||||||||||||||.||||||||||.|||||||
Sbjct 889 CCTTTTCTTTTTTTGGAGACGGAGTCTCACTCTTGTTGCCCAGGCTGGAGTGCAGAGGCGTGATCTCGGCTCAC 962
Query 56 TGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTG 129
|||||||||.|.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||...|
Sbjct 963 TGCAACCTCCGTCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCG 1036
Query 130 CCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT----- 198
||||||.|||..|.|||||||||||||||||||.||||.||.||||||||||||||||||||.||||||
Sbjct 1037 CCACCACACCCAGCTAATTTTTGCATTTTTAGTAGAGAAGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAAC 1110
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1111 TCCTAACCTCAGGTGATCTACCCGCCTCGGCCTCCAAAGTGCTGGGATTACAGGAGTGAGCCACTATGCCCGGC 1184
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1185 CTTCATTGGATTCTTTCTAGGGAAATTCGTCTTGTAGAGCAAAGCATGCAGAGTGCTATTTCTTTTTTTTTTCT 1258
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1259 CTTGACCAGAAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCTGCGGTGACCATTTTTTTGTGTGTGTA 1332
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1333 CAGCGTCATACAGGCTTTGCCTTTAATGATCTCTTATGGTTAGAAAACACAATAAAAACAAACTGGCTACTGGA 1406
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1407 CAAATTGTATATTACCAGATCATCACTAGCAGCTTTCAGTTGCACTTCAGTCCTTTATCAAATTCATAAAGAAT 1480
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1481 TGTTCTGGGAAGTGAGGAGCACCTCTGCCTGGCCACCCTGTCTGGGAAGTGAGGAGCCCCGCTTCCCGGGAGCC 1554
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1555 GCCCCATCTGGGAAGTGAGGAGCGCTTGCCTGGCCGCCCAACTGTCTGGGAAGTGAGGTGTGCCTGTGCCTGGC 1628
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1629 TGCCGCACTGTCTAGGAAGTGAGGTGCGTCTCTGCTGCCCGCCGCCCCATCTGGGAAGTGAGGAGCGCCTCTGC 1702
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1703 CCGGCTGCTGTGCAATCCTGCAAGTATGAAGTGACAGCCTTGTGTGTGATCTTTCTGCCCTCCCCAAGTTTGCA 1776
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1777 TTTTCGACATTAAAATTTACTTTTTAATTAAAAGTTTTAAATTGGAGAATTAAAAAAAAAACTAATTTCAGCTT 1850
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1851 ATTATTACTAGAGATGCATGAAAGCTCTACCCACATACATGCTAGGAAAAACAGTTCAGAAAACACAGGGGACT 1924
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1925 GACTCTTCCAAAAGGAGCAGCTGTCTACTCTGCGGCCTGCTTCCAAGGGCCACTGTGGGAGGAAGCCTGGGCTG 1998
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1999 CAGCGTTCCGAGGCAGCAGCAGCAGAGGGGAAGGAAGGAAGCAGGCCTTGCCTTGTGTGGCATTCCAGTTCCCT 2072
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2073 CTCCCAGCAGGGGCCAGATTCCCCTTCCTTAGCTTCAACTACAATTTGGCGAAAGCAATTCTAGGGTAATCGGG 2146
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2147 GGCAGTGAGGGGTGGGGGGCGGTGAGAGGTTTACTTCCCTCTGCTTAGATAACAGAGGTAGAAGAAACCCTTTC 2220
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2221 TGTCAATTGCTTGGCCTCTAAATGCCACAGGCAGGCTACTTTTCATGGCTGTTCGAAGCATCCAAGCAATCCAA 2294
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2295 AGTGGCTTTGAACAACAGAGTAAGGCCAAGAAGGGCAAAAAGGGACCAGAGCTGAGGTGTTTGGGCCAGTTCTG 2368
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2369 GATCACTCATATTGTTGAGGGAGGGGTGGGGGCATAAGATAACAAGGAGCCTACAGGCCACTTGAGGAAATTCT 2442
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2443 CTGGTTTTGCTGCAGCTTCGCTTCAAACTTCCACAGCAGAAGAGTTGGAATTCTAATGCCGCAATATCGTTGTA 2516
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2517 ATACCAGGGATTCTCTAGAGGCAAGTTAAGGCTTTCTGGGCAAAGAAAACAATTCCAGATGATATTGTGATAGA 2590
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2591 ATGCTACAGTGAAATGCTTCTTAATGACTCTCCTGTCCTGCCTAAAGGACAAAGACCTATGAGTGACTTCAACT 2664
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2665 TGACGTGATGTTTCAGTGATCTTTTACTTCAGCTCTAAGTCAGAATCAATGCCACAGGAAAAGAAAAGCTTCTT 2738
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2739 ACATCTCAGACATCTGCTTGCTGAGCAAACACAAACAAGAACACATGTATTGTTTCCCAGGAGCTGGCAAACTA 2812
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2813 GATCTCAAGTCACACAGTTACAAAGAGAGCTCTCATTCAGATGCCGGGCATATAAGCTCAGCTACCCAGAAAGT 2886
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2887 TCAGCTTTAATGAAGACTGTAGTTTTAGAATGAAAGCCTGAGCAGGAAGGATTTCTGCCCTGGGAATTCTCAAT 2960
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2961 GCTCTGCCTGAGTCACACTGGAGGATGGAGATAGGCTCCTCATTCCAGCGGCCAGCAGCTGCCACAGTCACAAG 3034
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3035 ACCACCCTCCAAACAGCAAGGGTCTTACGATGACAACGGGGACTCTGAAGAGAAGCCAGTCAAAGACACAGGGC 3108
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3109 TTTGGACAAGATCAAGGGTCTTCACCAGGAAAGCTTAATGCAGAAGCCCCCTCCCTCCAAGTCCCCTCAGCGTG 3182
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3183 AGCCTTGAGCCTTGACACAGCTGTTTCCACCTGCAAGGGCTGGAGAGGCCAAGTTCACGCAGATGTTCAGCAAT 3256
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3257 GTTCAAGCAAATGATGTGTAAATAGATGAAGTGGTCTTAGAGATGGTCTAAGAGGAGGGAACAGGCTCAGAGAG 3330
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3331 GTGAGGTGATTTGCCCACGATCCAATGTGAATTAGAGACCATTAGGACACGAACTCAGGTATATTTCCACTCTT 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 ACGGTGAATCATAAGGTTCCCAGTAAGTGTAAAATGCTGCAGAGAGGTTAAAAGAATATTGTAACCAACAGCTT 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 TCTGCTTTCATTCTGCTCTGGAATCATTTGTGTAAACTCACAGCAGGAAAAGATAACAGTTTTCTTCAAGTCTG 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 TTAAACTCACTTCTAACATAAAAACATTAAAGAAACTTGACACCATTTTTTGAGTCAGTTAATCCTAATTTGAC 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 TGGAATCAGTTACTTGTAAGTGTCTTCAAATTGCTTATGAGACACGGAGTGCTACAGGAGAGATGTGGGTGCTT 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 CTCCCCATTGGTTTTTAACATATTATTCCTGCAATGGAATTGTCCAGATTGATGCAATTTATAGCCTCAATTTG 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 ATTCTAAAATATATTCAAATACTCTTTAAAAATTCAGCCTTGTTTTAGCCCAAATAGAACCTTACTAGCAAGAG 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 GGGGATTCATATACTCATCAGAAATGAATGACTTTGGGAAGAAAGGCAAGGACACCTGGAGGAAGGAAAAAAGA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 TGACCTATCTATAAACTGCCACTCCCTCATTTATCAGGCAAGTTTGCAGCTCTGTGAATTCAATGCCTCTGTGC 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 TCTCATTCAGGGACAAACAAGAATTTTCCTGTAAGACAGCCACAGTCACATTCTCATTTCCATGCCTAAGAGCC 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 TGAAGCTTGAACAAAGGGCTTCAGTTAGTTTCATGTGAGCCAAAATGGAATGTGAGTGCCATTCAGAGCCACAC 4144
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4145 ACTAAAAAGATTTCAGCTGGGACACTGGCTCCCACAGTCCTGGGGGAGCAAATTCCGGTTGTGTGGCAACAAAG 4218
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4219 GCTATGCTGCCAGCCCTGCCTGTCCTCCACAGGGGCCACCAGGACTGCCGTGCAGACCAGGCTCCACCCTCCCC 4292
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4293 CACACCGGTTTGTGTGACAACAGGGCTGTCTTTTCTCTTCCTGAATTTCTGAATGGAGCTGGTACATGGGCCAG 4366
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4367 CCACTATTTTGTCAGAACAGGTTAAGGGGTGTGGCCTCAGGCATATGAAAGGAGCCTCTCGCTCTTCTGGGGTG 4440
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4441 GTGATTCAGTCCTAGGAAGTTATTGCTTGGTTTACCTATTCTCATAAAAAGTCTTGATAAATGAAGGTAGTAGT 4514
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4515 AGCAGAAATATGACTATGAATGTTCTAGATCACAGCTGTAGTTGGGTGAAGGGAAAAGTAACAGAGGAGAGGGG 4588
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4589 CTAACTTCCAAACTGAGAGGGTAAAGTGCCAGTCTGTGCTAAAAGAACGTGAAAAGGAAACCTATTAGAGAAAT 4662
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4663 AATACACTGGGGGGAAAGTCATAATGATAGAGGCTGGTGAGTGCCAGAAATTATACCAAAGCGAAGTTGAGACC 4736
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4737 ACAGAAATCTCAGTCTCTGAGATAAGGGCTGCTTTTGATGTCATTCGGATGATTTGGTGATTGTCAGAAAACAA 4810
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4811 CTTCTTCAGGTTACAGACCTGGACCCATGCCCACGGGTCCCGTCACAGTCACTTGGACCCGTGCCCAAACCACA 4884
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4885 CCCACCTGTGGCCCTGAGGGTTGGCACTCAGGCGCCCAGGTGGCTCCTTTGATCCCTGAAACATCCATGCAGAC 4958
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4959 CCACTACTTATATTCCAGTCTGTCCTGGAGTCAAAGGAGATGAAGGAGGAAAAATATCTTTTTAAAGTATCCAG 5032
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5033 GCAATTTTACTCATAGTTCTGTTTAGTTCCAGATAGCAACAGCTGATTGTTCAAAGTGCAGGGTTTTTGGATAT 5106
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5107 TCAAGTACCACAGGATCGGAGAAAAGGAGTACTTGAAACCTAGAGTTGCGTTTTCACTTGAGAAGACACACTTT 5180
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5181 GGAAACACCTATCCAACAGACTACAAATATAGGCTATTAAATTAAAAATCTGGTTTCAAAATAATACCCACTTA 5254
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5255 GGTTGGAAATATCTTTCTCCAAACTCAGATCCAACTTTTGAATTGTTTGGTATCAAAGGCAAAGTTAGAGGGAC 5328
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5329 TTGGGTTTAAAAACTAAAATTACAAGTGAGTGCTTAAAAAAAAAACAACTCAAAACATCTTTTTATCAAATAAG 5402
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5403 GGACACACACACACAAAAGGCAAACGATGATATCTACATGCTTAGACTGGGAGAGCAGCTCCCAGGCTCCCCTG 5476
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5477 GAGGGATGTTCTCTCAAACCTCAGTAAACTGAGTTTGTCATTGAACTTTGAACCTGGTAGTGAGCTCAGCAATC 5550
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5551 TACCTGGTCCAAGTCCCCCATTTTAGAGGTGAAGAAATTGAAGTCCACAGCGACTTTGTCCAGGGTGAAAAGCA 5624
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5625 GAGCCAGGGCACAGCCCAGATGCTCAGCCCACCCAGAGCCCTTCTGAGACATCACACTGTGGTCACACGACGGC 5698
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5699 AGCTCCATAGCCGGCCTTGCTGCTCTGGAGACCGTGGGAGCTAGAGGACACCCCTGATTATGAATTTCAATAAA 5772
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5773 ACGAGCTGCAAAGATGTTTCCAATTTAAGGGCGCTGTTGAACAGCATTTCCAAAATTTGCTTGGTGATGAGAAT 5846
Query 199 ---------------- 198
Sbjct 5847 CATCTGGGGCACTTGT 5862
