Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_002958934.1
- Aligned Length:
- 4155
- Identities:
- 172
- Gaps:
- 3957
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCGGGGAGGGGGAGGGGGAGGCGGAGGGGGAGGGGCAGAAGAAGGGGGCAAGGAGGGCAGAGAGATGAGCGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGAAAGGAGGGGTGCGGGAAAGGAGGAGAGGAAGGAGCGGTGGGAGGAGGAGGAGGGGTGCGGGAGAGAAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTGAGGGAGAGGCGGAGGGAAACCGCACCCCTGCCTCTTTCCTGGGCCGAGGCCAGCCGGGGAGGAAATGTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATGGGCGAAGTGCACATCCGCCTCCAGGCCTAAGGGGTGTACGGGTCAGGCCGCACCGACCCCGCCCTTCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCCCTTCCTGCCAGACCTCTGCCTCCGATGGGCGAGCCCGGTTGCTGGGAGGCGGTTCACTATGGAGCCTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCTCCCCACAGTTCAGCCCGCCGGAGGCGTGTGCGCTTCCAGATGAGAGCACTTGTTCACTGAATGACCGCAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCATTGTTAATGGGTGCGTGTGTACAGTTCTGGGCACATACCAACATGCACGGATGCATGTTAACCTGCTTTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGGAAGAAACGGGGTCAGGATATCATAAAAAGAATTAATGGGTAATCAGTATTCATCAAATGCCAAGATCTAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCTGAGCACTTTGCAAATATTAATTTAATCACCACGAACCTCAGTAAAGTTTATTACTATTACTCGCATTTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGATGAGGCGCCTAAGGCACAGAGAGGTTAAGTAGCCTGCCCAGGATCACACAGCTACTAAGTACAGAAGTCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAATTTGAGCCTGACTCCAGAGCTCATAAGGTTAACAACGAGGCCTCCCACTTTTATATGCGTATTATTCCATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AATTACTGTTTACACTAAGAATATGTTCTTTTCTGCAACCAATGGAAGATTCCTAGAAGAGGAACTACTGGCTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTGGCATTGAGATTTTTCTTTTTTCTTTTTTTTTCTGAGATGGAGTCTAGCTCTGTCGCCCAGGCTGGAGTGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCCCAAAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCTGGGATTACAGGCCTGCCACTATGCCCAGCTGATTTTTGTATTTTAAGCAGAGATAGGGTTTCACTGTGTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCCAGGCTGGTCTTGAACTCCTCACATTGTGATCCACCCGCCTCGGCCTCCCAAAGTTCTGGGATTACAAGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAGCCACCGCGCCTGGCCGTGTGTTTGAGATTCCTAGAGACATTAGTAAAACCCTCCAAAAGAGTGGGGACCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACACCAGCCTGCCGGTTCAAGCTCCATACTGGACCTCCACCTCCCCAACCCCCACCCCCACCCCACCAGAAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGACCCTCCATCCCCTTCAGGTCATAGAGTGAGGAAGAGGGAAGCTTCAACAGGCCCAGATGGCCCTGGTAATG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGCACGGTGACATTTGGGCAGAGAACCCCAGGGCCCTGCATCTGCAGACCTGGGACAGGCAGAGAATGTCCAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGGGTGCTAGTGGCATTGCCTGGCCATGACTCTGTCCAGCTGTGGCATCATGTCCCATGGCCAAAGTGTCCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCAAGCCTGCTTCTGCCATTGACCTAGGGAGGCCTCTTGACACCTGCTCATTTTCCAAGCCTGTTCCTCCTGCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCTCAAGATTCGGAGTGCCCTCCAAAATAAGATCTTTTTCTGTAGTTGTTACTATGGGTTAAGAACCCTCCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCTGATACATACAACTGATTACAAACTTTTAATTTTTGCCAATCTGATAAGCAAAAAAAAAGAAAGTAGTTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGATTTAGTTTACATTTCCTTTTTAACAGGGAGGTTGGGTAGAGACTTCTTGGTTTGCTCATGCCTGTAATCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGCACTTTGGGAGGCTAAGGTAGGAAGATCGCTTGAACTCAGGAATTCAAGCCAACCTGGGCAACATAGCAAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTCACCTCCACTAAAGGGAAAAAACAATCCATGTTCCTTTTCTTCCAACCCAACAGATCTGTGGCTGGGCAGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCTGAGCTCAACTACAATTCCAGCCTGCTTTACAGTTAGGCTTGTCCACAGGACCAAGTTCTCAGTGACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAGTAAGAGCAGGCCTGTGATAGGAGCCTCTTCTGTACCTCGGCCTCCAAGATGCCTAGAATCTGGCTGTGGCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGCCCAAGGGGAGGCGAGCAGCAGGAGAGAAGGGTCCTGGGGTTTGGGGGGACCAGGAGGAGCAGAGCTGCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTCAGCTCAGATCCATAACCTGAGAAAGAAAGAGGGATGGCACATTTTATGTGTTAACTTAAATATCTGGCTAC 2294
Query 1 ---------------------------------------------------------------------ATGG- 4
||.|
Sbjct 2295 ATCGCTCAGATATTTGATTAGACACTATTCTAGATGTTTTTATGAAGGTATTGATTAATTGATTGATTGATTGA 2368
Query 5 ---AGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGG 75
|||||||||||||..|||||||||||||||.|||||...|||||||||||||||||||||..|||||..||
Sbjct 2369 GACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCGGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCAGG 2442
Query 76 TTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTT 149
||||||..||||||...||||||||||||||||||||||.|||||||.|.|||||||||||.|||||.||||||
Sbjct 2443 TTCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGCATTACAGGCATGTGCCACCATGCCTGGCTAATTT 2516
Query 150 TTGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------- 198
|||.|||||||||.||||.||.||||||||||||||||||||.||||||
Sbjct 2517 TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCCTGACCTGAAGTGATCTGCCCACC 2590
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2591 TTGGCTTCCCAAAGTGCTGGGATTACAGGCCTGAGCTACCACAACCGGTGAAAGTACTTTTTAAGATAAGATTA 2664
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2665 GCATTTAAATCAGAAGATTTTGAGTAAAGCAGATTATTCTCCACAATGTGGGCAGATCTCATCCCATCAGTTGA 2738
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2739 AGACCTTAAGAGAAAAGAGACTGACCTGCTCTGAGCAAGGAGGAATTCTGCTGGCCAACTGCTTGTGAACTCCA 2812
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2813 ACTTGTAATATCAGTCTCCAGCCTACCGGCTTACTCTGCAGATTTTGGATTTGCCAAGCCTCCACAACCGCAGA 2886
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2887 AGCCAATTCCTTAAAATAAATCCCTTACAACAGTTCCCTAAAATAAATTCTTCAAAATTCCTTAAAATAAATGT 2960
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2961 GTGTGCATGTGTGTCTGTGTATATATATAGCCTATGTAATGTCTAATATAGATCTATAATATATATTAGATAAA 3034
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3035 TATACACATACTTATCATATATATATGTGTGTGTGTGTGTGTGTGTGTTTCTCCTATTGGTTCTGTTCTCTGGA 3108
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3109 GAACCTAATACAGAAACAAATCTGTTTATTCTTCTAGCCTCTGTATCATCAGGCCTCTTTGTTAGAGCAGGTGA 3182
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3183 GCTTTACCCTAACTAATTCAGAGGTTGATTCGTTTTCATGCATGTAGATACTTGTCATTTAGCTTCTATTATCT 3256
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3257 GCCTGTATTTTAAGGTTCTTTGTCTTAAAATGTTATGACTCCAGGAATGTTATATATTAAGTATATTAACCTTT 3330
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3331 TGACTATTATATATCTTGCAAACATCTTGTAATCAGTCACTTGTCTCTTTATTTTATTTGGAGCGGCTTTCAAC 3404
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3405 CTAGAGCAGTGGTCCCCAAACCCGGGGCTGCAGACTATTCCCTGTCTGTGGTTTGTTAAGAACCAGGCTACATA 3478
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3479 GCAGAAGATGAGTAGCAGGCGCGGGAGCATGACCACCTGAGCTCCGCCTCCTGTCAGACCAGCAGCGACATTAG 3552
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3553 ATTCTCATAGGAGCACAAACCCTACTGTGAACTGTGCGTATGAGGGATCTAGGTTGCACATTCCTTAAAAGACT 3626
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3627 CTTAATGCCTGATGATCTGAGGTGGAACAGGTTCACCCTGAAACCATCCCCCGCTCAGCCTGTGTCTGTGGAAA 3700
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3701 AATTGTCTTCCATGAAACTGGTCCCTGGTGCCAAAAAGGCTGGGGACTGCTGACCTACAAGATATATTAGTTAT 3774
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3775 GACTCTTGGTGCATACTCTTGACAGAAATCCCACTCAACCTAGTATAATGCAGAGGACAGTTCACGGAGCAACT 3848
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3849 CAAATAATTGCCACTTTTACAATATTGAAGCTTCCTACGGGAAACATAATACATCTCTCAATTTATGTCCTTTA 3922
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3923 ATACGATTAAACATTTTTCTTCATGTAGGTTCTCCAGAATTTTGGTTATGCCTATGCCTAGATTATTTATGATT 3996
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3997 GTTGTTGGTATTGCAAATGTCCTCTCCTATTGATTATTTAATGGTATCTATGGAAAGTATTGATTTTTGTGTAT 4070
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4071 TTGCTCTGTGCCCACTTGCCATCTAACTGGTTGTTATATTTTATTGAACCTTTCAAAGGATATGAATTATGCTG 4144
Query 199 ----------- 198
Sbjct 4145 ATTTTAATGTC 4155
