Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11646
- Subject:
- NM_001252683.1
- Aligned Length:
- 3669
- Identities:
- 1334
- Gaps:
- 2166
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCTGCCAGGCGGCTCATGGCGCTGGCTGCCGGCGTCTCTCCGCGCCTCCGGCCGCCGGATCCCCTTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTTCCGGGCGACAAGGATGTTCGCGCGGCTTCTCATCAAGCTTTGTCCGCTCTGATGGCACTCAGGAAGCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGAGGTCGAATCAGAGGTGGCCCCTAGCGAGCCTGGGGAGGGTGACGGAAGCATGGTGAACGCTTCTAGGGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTATTAAAAGAGTTTCCGCAGCCTAAAAACCTTCTCAACAGCGTGATTGGAAGAGCCCTTGGCATCTCACATGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAAAGACAAGTTAGTCTATGTGCACACGAATGGACCGAAGAAAAAGAAAGTCACCCTGCACATAAAGTGGCCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGAGCGTGGAGGTGGAAGGCTATGGCAGCAAGAAGATTGATGCTGAGCGTCAGGCTGCAGCAGCTGCCTGCCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCTTCAAGGGCTGGGGTCTGCTGGGACCACGGAATGAGCTGTTTGATGCAGCTAAATACCGAGTGCTAGCTGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCGTTTTGGGTCTCCAGCTGACAGCTGGTGGCGCCCAGAACCCACCATGCCTCCAACTTCCTGGCGGCAGCTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATCCTGAGAACATTCGGCCAGGGGGTCCTGCAGGACTATCCCGATCCTTAGGCCGAGAGGAAGAGGAAGATGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGGAAGAGCTAGAAGAGGGGACCATTGATGTGACAGAGTTTCTGTCTATGACCCAGCAAGACTCCCACAACCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACTCAGGGACTCAAGGGGGGGCTCCTTTGAAATGACAGATGATGACAGTGCTATCAGAGCTCTGACCCAGTTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTTCCCAAGAACCTCCTGGCCAAAGTGATTCAGATTGCAACCTCCTCCTCCACAGCTAAGAATCTCATGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCCATACTGTGGGTACCAAGACCAAGCTGGCTACACTCACTCTGCTCTGGCCCTGTCCCATGACCTTTGTTGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAAAGGGCGACGCAAAGCTGAGGCTGAGAATAAGGCAGCAGCCTTGGCTTGCAAGAAACTGAAGAGCCTTGGCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGTGGACAGGAACAATGAGCCGCTTACCCATGCCATGTACAACCTGGCCTCCCTGCGTGAGTTGGGTGAGACC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGCGCCGGCCATGTACCATCCAGGTGCCTGAGCCCATCCTTCGCAAGATAGAGGCCTTCCTGAGTCATTACCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGTGGACAGCTCATGGATTTCCCCAGAACTCCGACTGCAGAGTGATGACATCTTGCCCTTAGGCAAGGACTCAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGCCCTTGAGTGACCCTATCACAGGCAAGCCATACATGCCCCTGTCAGAAGCAGAGGAGGTGCGCTTAAGCCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGCCTGCTAGAGCTGTGGCGGAGGAGAGGGCCGATCTGGCAGGAGGCCCCGCAGCTACCTGTAGACCCTCATCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGACACTATCCTCAGTGCCATTGAACAACACCCAGTGGTAGTCATCTCTGGGGACACAGGCTGTGGGAAGACCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CACGTATCCCTCAGCTGCTATTGGAGCGCTATGTGACTGAGGGTCGAGGTGCCCGCTGCAATGTGATCATCACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAACCTCGCCGGATCTCAGCTGTGTCTGTGGCACAGCGGGTCAGCCATGAACTGGGCCCCTCCTTGCGCCGGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTGGGCTTCCAGGTACGCTTGGAAAGTAAGCCCCCAGCCCGAGGTGGGGCGCTGCTCTTCTGCACTGTGGGTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCCTGCTTCGGAAGCTGCAGAGCAACCCCAGCCTGGAGGGTGTGAGCCATGTCATTGTGGATGAGGTCCATGAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGGGATGTGAACACAGACTTCCTGCTGATTCTGCTCAAGGGCCTGCAGCGGCTCAACCCAGCTCTTCGGCTGGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTCATGAGTGCTACAGGAGATAATGAGCGCTTTTCCCGATACTTTGGGGGCTGCCCTGTTATCAAGGTACCTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCTTCATGTATCCCGTCAAGGAACACTACCTGGAGGACATCTTGGCCAAGCTGGGTAAACATCAGTACCCACAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CGGCATCGGCACCATGAGTCGGAAGATGAATGTGCACTTGATTTGGACCTTGTGACTGACCTGGTTCTGCATAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGATGCCCGTGGGGAACCAGGTGGGATCCTGTGCTTTCTACCTGGCTGGCAAGAAATCAAAGGAGTGCAACAAC 2146
Query 1 --------------------ATGCACGAGAGCAAGTACCTCATCCTGCCAGTGCACTCCAACATCCCCATGATG 54
|||||.||.|||||||||||||||.|.||||||||||||||.||||||||||||
Sbjct 2147 GGCTCCAGGAGGCCCTGGGCATGCATGAAAGCAAGTACCTCATCTTACCAGTGCACTCCAATATCCCCATGATG 2220
Query 55 GATCAGAAGGCCATATTCCAGCAGCCTCCAGTTGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGCTGAGAC 128
||.|||||||||||||||||.|||||||||.|||||||.|||||||||||.||||||||||||||||||||.||
Sbjct 2221 GACCAGAAGGCCATATTCCAACAGCCTCCACTTGGGGTACGCAAGATTGTATTGGCCACCAACATTGCTGAAAC 2294
Query 129 TTCCATCACAATCAATGACATCGTGCATGTGGTGGACAGTGGGCTGCACAAGGAAGAACGCTATGACCTGAAGA 202
.|||||||||.|.||.|||||.||.|||||.||||||||.||.|||||||||||.|||||||||||||||||||
Sbjct 2295 CTCCATCACAGTTAACGACATTGTACATGTCGTGGACAGCGGTCTGCACAAGGAGGAACGCTATGACCTGAAGA 2368
Query 203 CCAAGGTGTCCTGCCTGGAGACAGTGTGGGTATCAAGAGCCAATGTGATCCAGCGCCGGGGCCGGGCGGGCCGC 276
||||||||||||||||||||||.||||||||.||.|||||.|||||.||.||||||||||||.||||.||||||
Sbjct 2369 CCAAGGTGTCCTGCCTGGAGACTGTGTGGGTGTCGAGAGCAAATGTCATTCAGCGCCGGGGCAGGGCAGGCCGC 2442
Query 277 TGCCAGTCCGGCTTTGCCTACCACTTGTTCCCTCGAAGCCGGCTGGAGAAAATGGTCCCTTTCCAAGTGCCAGA 350
||||||||.||.||||||||||||||||||||..|.||||||||||||||||||||.|||||||||||||||||
Sbjct 2443 TGCCAGTCAGGTTTTGCCTACCACTTGTTCCCGAGGAGCCGGCTGGAGAAAATGGTTCCTTTCCAAGTGCCAGA 2516
Query 351 GATCCTGCGCACACCTCTTGAGAACCTGGTGCTGCAAGCGAAAATCCACATGCCTGAGAAGACGGCGGTGGAGT 424
|||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.|||||||
Sbjct 2517 GATCCTGCGCACACCTCTTGAGAACCTGGTGCTGCAAGCCAAAATCCATATGCCTGAGAAGACGGCAGTGGAGT 2590
Query 425 TCCTGTCCAAGGCTGTGGACAGTCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGG 498
||||.||.||||||||||||||||||||.||||||||||||||.|||||.||||||.|||||||||||||.|||
Sbjct 2591 TCCTCTCTAAGGCTGTGGACAGTCCAAATATCAAGGCAGTGGATGAGGCCGTGATCCTGCTCCAGGAGATTGGG 2664
Query 499 GTGCTGGACCAGCGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCTCACATCTCCACCGACCCCCGGTTGGC 572
||||||||||||||||||||.|||||.|||.||||.|||||||||||.||||||||.||.||||||||..||||
Sbjct 2665 GTGCTGGACCAGCGGGAGTATCTGACCACCTTGGGACAGCGCCTGGCCCACATCTCTACTGACCCCCGACTGGC 2738
Query 573 CAAGGCCATTGTGTTGGCTGCCATCTTCCGTTGCCTGCACCCACTACTGGTGGTCGTTTCCTGCCTCACCCGGG 646
|||||||||.|||||||||||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||
Sbjct 2739 CAAGGCCATAGTGTTGGCTGCCATCTTCCGTTGCCTGCACCCACTGCTGGTGGTTGTTTCCTGCCTTACCCGGG 2812
Query 647 ACCCCTTCAGCAGCAGCCTACAGAACCGGGCAGAGGTGGACAAGGTGAAAGCACTGTTGAGCCATGACAGCGGC 720
||||||||||||||||..|.||||||||||||||.||.|||||||||||.|||.||.|||||||||||||.|||
Sbjct 2813 ACCCCTTCAGCAGCAGTTTGCAGAACCGGGCAGAAGTAGACAAGGTGAAGGCATTGCTGAGCCATGACAGTGGC 2886
Query 721 AGTGACCACCTGGCCTTTGTGCGGGCTGTCGCCGGCTGGGAGGAGGTGCTGCGTTGGCAGGACCGCAGCTCCCG 794
||||||||..|||||||.|||||||||||.||.||||||||||||||.|||||.|||||||||||.|.||||.|
Sbjct 2887 AGTGACCATTTGGCCTTCGTGCGGGCTGTGGCTGGCTGGGAGGAGGTACTGCGCTGGCAGGACCGTACCTCCAG 2960
Query 795 GGAGAATTACCTGGAGGAAAACCTGCTGTACGCACCCAGCCTGCGCTTCATCCACGGACTCATCAAGCAGTTCT 868
|||.||.||||||||.||||||||.|||||.||.||||||.||||||||||||||||.||||||||||||||||
Sbjct 2961 GGAAAACTACCTGGAAGAAAACCTTCTGTATGCCCCCAGCTTGCGCTTCATCCACGGGCTCATCAAGCAGTTCT 3034
Query 869 CAGAGAACATTTATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAG 942
|||||||||||||||||||.|||||.||||||||||||||.||||||||.|||.||||.||.||||||||.|||
Sbjct 3035 CAGAGAACATTTATGAGGCTTTCCTAGTGGGGAAGCCCTCTGACTGCACACTGCCCTCTGCTCAGTGCAATGAG 3108
Query 943 TACAGTGAGGAGGAGGAGCTGGTGAAGGGCGTGCTGATGGCCGGCCTCTACCCCAACCTCATCCAGGTGAGGCA 1016
|||||.|||||.|||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||.||
Sbjct 3109 TACAGCGAGGAAGAGGAGCTGGTGAAGGGTGTGCTGATGGCTGGCCTCTACCCCAACCTCATCCAGGTGAGACA 3182
Query 1017 GGGCAAGGTCACCCGGCAGGGGAAGTTCAAGCCCAACAGCGTCACATATAGGACCAAATCAGGCAACATCCTGC 1090
.||.|||||.||.|||||.||.||||||||.||||||||.|||||.||.|||||||||||.|||||||||.|||
Sbjct 3183 AGGTAAGGTTACTCGGCAAGGCAAGTTCAAACCCAACAGTGTCACTTACAGGACCAAATCTGGCAACATCTTGC 3256
Query 1091 TGCACAAGTCGACCATTAACAGGGAGGCCACACGGTTACGGAGCCGATGGCTGACGTATTTCATGGCAGTCAAG 1164
||||.|||||.|||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||.||||||
Sbjct 3257 TGCATAAGTCAACCATTAACAGGGAGGCTACCCGGTTACGGAGCCGATGGCTGACATATTTCATGGCCGTCAAG 3330
Query 1165 TCCAATGGCAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAGCTGTGCTGCTGCTGACCGACGGGGA 1238
||||||||.||||||||.||.||.||.|||||.|||||||||||.|||||||||.||||.||.||.||.|||||
Sbjct 3331 TCCAATGGTAGCGTCTTTGTTCGAGATTCCTCCCAGGTGCACCCACTAGCTGTGTTGCTCCTAACAGATGGGGA 3404
Query 1239 CGTGCACATCCGTGATGACGGGCGCCGGGCCACCATCTCACTGAGCGACAGTGACCTGCTGCGGCTGGAGGGTG 1312
||||||||||||.|||||.|||||.|||||||||||||||.||||.|||||.||||||||.||||||||.||||
Sbjct 3405 CGTGCACATCCGAGATGATGGGCGTCGGGCCACCATCTCATTGAGTGACAGCGACCTGCTTCGGCTGGAAGGTG 3478
Query 1313 ACTCGCGTACCGTGTGGCTGCTGAAGGAGCTGCGGCGGGCCCTGGGCCGCATGGTGGAGCGGAGCCTGCGCAGC 1386
|.||.||.||.|||.||.||||.|.||||.|.||.||.|||||.||.||.|||||||||||||||||.||||||
Sbjct 3479 ATTCACGAACTGTGCGGTTGCTAAGGGAGTTTCGTCGAGCCCTAGGACGGATGGTGGAGCGGAGCCTCCGCAGC 3552
Query 1387 GAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGGAGCACGGGCAGCTGCTTGCGCTACTGGCAGAGCTGCTGCG 1460
|||.|.|||||||||||.|..||.||.|||.|.||.|||||||||||||||||.||.|||||||||.||||.||
Sbjct 3553 GAGTTAGCTGCACTTCCTCTTAGTGTGCAGCAAGAACACGGGCAGCTGCTTGCACTGCTGGCAGAGTTGCTTCG 3626
Query 1461 AGGACCCTGTGGCAGCTTTGATGTGCGCAAGACAGCTGACGAC 1503
||||||.|||||||||||||||.||||||||||||||||.|||
Sbjct 3627 AGGACCTTGTGGCAGCTTTGATATGCGCAAGACAGCTGATGAC 3669
