Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11681
Subject:
NM_001194938.2
Aligned Length:
4236
Identities:
896
Gaps:
3339

Alignment

Query    1  ATGGCGGACACCGACCTGTTCATGGAATGTGAGGAGGAGGAGTTGGAGCCATGGCAGAAAATCAGTGATGTCAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGGACACCGACCTGTTCATGGAATGTGAGGAGGAGGAGTTGGAGCCATGGCAGAAAATCAGTGATGTCAT  74

Query   75  TGAGGACTCTGTAGTTGAAGATTATAATTCAGTGGATAAAACTACCACAGTTTCTGTGAGCCAGCAGCCAGTCT  148
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct   75  TGAGGACTCTGTAGTTGAAGATTATAATTCAGTGGATAAAACTACCACA-------------------------  123

Query  149  CGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTTGCTGGGCACCTCTCTACATCCACCACCGTTAGTAGCAGC  222
                                                                                      
Sbjct  124  --------------------------------------------------------------------------  123

Query  223  GGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATGCTGGCAATCCTTT  296
                                                                        ||||||||||||||
Sbjct  124  ------------------------------------------------------------GCTGGCAATCCTTT  137

Query  297  GGTCCAGCAAGGTGGACAGCCACTCATCCTGACCCAGAATCCAGCCCCAGGTCTGGGCACAATGGTTACTCAAC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  GGTCCAGCAAGGTGGACAGCCACTCATCCTGACCCAGAATCCAGCCCCAGGTCTGGGCACAATGGTTACTCAAC  211

Query  371  CAGTATTGAGGCCTGTTCAGGTCATGCAGAATGCCAATCATGTGACTAGTTCCCCTGTGGCCTCACAACCAATA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  CAGTATTGAGGCCTGTTCAGGTCATGCAGAATGCCAATCATGTGACTAGTTCCCCTGTGGCCTCACAACCAATA  285

Query  445  TTTATCACTACGCAGGGATTTCCTGTAAGGAATGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  286  TTTATCACTACGCAGGGATTTCCTGTAAGGAATGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGT  359

Query  519  GCTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTTCCAGCCCCAGGTACCCAGTTTGTTAAGC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GCTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTTCCAGCCCCAGGTACCCAGTTTGTTAAGC  433

Query  593  CGACAGTTGGAGTTCCACAAGTGTTCTCCCAGATGACCCCTGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  CGACAGTTGGAGTTCCACAAGTGTTCTCCCAGATGACCCCTGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCC  507

Query  667  ACCACCAACACCTTCACCACCGTCATCCCGGCCACTCTTACCATTCGAAGCACCGTCCCACAGTCCCAGTCCCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  508  ACCACCAACACCTTCACCACCGTCATCCCGGCCACTCTTACCATTCGAAGCACCGTCCCACAGTCCCAGTCCCA  581

Query  741  GCAGACCAAGTCCACTCCCAGCACTTCTACCACTCCCACTGCCACACAGCCAACCTCACTGGGGCAACTAGCTG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  582  GCAGACCAAGTCCACTCCCAGCACTTCTACCACTCCCACTGCCACACAGCCAACCTCACTGGGGCAACTAGCTG  655

Query  815  TTCAGTCTCCAGGCCAGTCAAACCAGACCACGAATCCCAAGCTAGCTCCCTCCTTCCCCTCTCCACCTGCAGTG  888
            |||||||||||||||||||||||||||||||||||||||||||                           ||||
Sbjct  656  TTCAGTCTCCAGGCCAGTCAAACCAGACCACGAATCCCAAGCT---------------------------AGTG  702

Query  889  AGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGCGAAAATAGCAATGAAGTGGCCAAATTGGT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  703  AGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGCGAAAATAGCAATGAAGTGGCCAAATTGGT  776

Query  963  GAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCAGTGGTGGTGTCCAACAACAGCTCTGCTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  777  GAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCAGTGGTGGTGTCCAACAACAGCTCTGCTC  850

Query 1037  ATGGCTCTCAAAGAACCAGCGGACCTGAGTCTTCAATGAAAGGTACAATAACC---------------------  1089
            ||||||||||||||||||||||||||||||||||||||||||      |.|||                     
Sbjct  851  ATGGCTCTCAAAGAACCAGCGGACCTGAGTCTTCAATGAAAG------TGACCTCTTCCATCCCAGTATTTGAC  918

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct  919  CTCCAGGATGGTGGACGGAAAATATGTCCACGATGTAATGCTCAATTTCGTGTTACTGAAGCTTTGAGAGGTCA  992

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct  993  CATGTGTTACTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGAAAGTCCCTGGATTCAGAACCCAGTGTCC  1066

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1067  CATCAGCAGCAAAGCCCCCATCCCCTGAGAAAACAGCTCCTGTTGCTTCCACACCCTCTTCTACACCTATTCCT  1140

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1141  GCTCTGTCACCGCCTACCAAAGTACCAGAACCAAATGAGAACGTGGGCGATGCCGTCCAGACCAAACTCATTAT  1214

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1215  GCTTGTAGATGACTTCTACTATGGACGGGATGGTGGCAAAGTAGCCCAGCTCACAAATTTCCCTAAGGTCGCCA  1288

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1289  CATCTTTCCGATGCCCACATTGTACCAAAAGGCTAAAAAACAATATTCGATTCATGAACCATATGAAACACCAC  1362

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1363  GTAGAACTCGATCAGCAGAACGGTGAGGTAGATGGTCACACTATCTGCCAGCACTGTTACCGCCAGTTTTCCAC  1436

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1437  TCCCTTCCAGCTTCAGTGCCACTTGGAAAATGTTCATAGTCCCTATGAATCTACTACCAAGTGCAAGATCTGTG  1510

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1511  AATGGGCGTTTGAAAGTGAGCCACTATTTCTCCAGCATATGAAGGATACTCATAAGCCTGGAGAGATGCCTTAT  1584

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1585  GTTTGCCAGGTGTGTCAATATCGCTCCTCACTCTACTCTGAGGTAGATGTCCATTTTCGGATGATCCATGAGGA  1658

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1659  TACCCGGCATCTGCTCTGCCCTTATTGCCTGAAGGTCTTCAAAAATGGCAATGCATTCCAACAGCATTACATGA  1732

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1733  GGCACCAGAAGAGAAATGTTTATCACTGCAACAAATGCCGGCTGCAGTTTCTCTTTGCCAAGGACAAAATTGAA  1806

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1807  CACAAGCTTCAACACCATAAAACCTTCCGTAAACCCAAGCAGCTGGAGGGCTTGAAACCAGGCACCAAGGTGAC  1880

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1881  AATCCGGGCTTCCCGAGGGCAGCCACGAACTGTTCCTGTATCCTCTAATGATACACCTCCCAGCGCCTTGCAGG  1954

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 1955  AGGCAGCACCGCTGACCTCCTCAATGGACCCTCTGCCTGTCTTCCTTTATCCCCCTGTCCAGCGCAGCATCCAG  2028

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2029  AAGAGAGCTGTTAGGAAAATGAGTGTCATGGGCCGGCAGACATGCCTGGAGTGCAGCTTCGAGATCCCAGACTT  2102

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2103  CCCTAATCATTTCCCTACTTACGTACACTGCTCTCTGTGTCGCTATAGCACCTGCTGTTCTCGAGCTTATGCCA  2176

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2177  ACCACATGATCAACAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAGTGGA  2250

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2251  ATCAAGCTGGCCTGCACTTCATGTACCTTTGTTACCTCTGTGGGCGATGCTATGGCCAAGCATTTGGTATTCAA  2324

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2325  CCCCTCTCACAGATCCAGCAGCATCCTGCCACGGGGACTCACTTGGATAGCTCACTCAAGGCATGGCCAGACTC  2398

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2399  GTGACCGAGTGCATGACCGGAACGTGAAGAATATGTACCCTCCTCCTTCCTTCCCCACTAACAAAGCTGCCACT  2472

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2473  GTGAAATCTGCGGGGGCCACCCCAGCTGAGCCTGAAGAGCTACTAACTCCCTTAGCCCCAGCACTCCCATCACC  2546

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2547  AGCCTCAACTGCAACCCCACCACCAACCCCCACTCACCCGCAGGCTTTAGCCCTTCCACCGCTGGCTACAGAGG  2620

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2621  GAGCCGAATGTCTGAATGTTGATGATCAGGATGAAGGGAGCCCAGTCACCCAAGAACCTGAGCTAGCATCAGGT  2694

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2695  GGTGGTGGTAGTGGTGGAGTTGGCAAAAAGGAGCAGCTGTCTGTGAAGAAGCTTCGAGTAGTACTGTTTGCTCT  2768

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2769  ATGCTGCAATACAGAACAGGCAGCTGAACACTTCCGAAATCCCCAGCGACGTATTCGCCGTTGGCTTCGACGTT  2842

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2843  TCCAGGCCTCCCAGGGGGAGAATCTAGAGGGCAAATATCTGAGCTTTGAGGCAGAAGAGAAACTGGCTGAGTGG  2916

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2917  GTGCTAACCCAGCGCGAACAACAGCTACCTGTAAATGAGGAGACCTTGTTCCAGAAGGCCACCAAAATAGGACG  2990

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 2991  TTCTTTGGAAGGGGGGTTTAAGATCTCCTATGAGTGGGCTGTGCGTTTCATGCTGCGGCACCACCTGACTCCCC  3064

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3065  ATGCCCGGCGAGCTGTGGCCCACACCCTACCTAAGGATGTAGCAGAGAATGCAGGACTCTTCATTGATTTTGTA  3138

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3139  CAACGGCAGATTCACAACCAGGACTTACCCTTGTCTATGATTGTGGCTATTGATGAGATCTCTTTGTTCCTGGA  3212

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3213  TACAGAGGTGCTGAGCAGTGATGATCGAAAGGAGAATGCCCTGCAGACAGTGGGCACAGGGGAACCTTGGTGTG  3286

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3287  ATGTAGTCCTAGCCATTCTGGCAGATGGCACTGTCCTTCCCACCCTGGTTTTCTACAGAGGGCAGATGGATCAG  3360

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3361  CCTGCTAACATGCCAGACTCCATATTGCTAGAGGCAAAGGAGAGTGGCTACAGTGATGACGAGATCATGGAGCT  3434

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3435  GTGGTCAACTCGAGTGTGGCAGAAGCACACAGCTTGCCAGCGCAGCAAAGGCATGCTTGTGATGGACTGTCATC  3508

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3509  GCACTCACTTGTCAGAAGAGGTACTGGCTATGCTTAGTGCCTCTAGCACTTTGCCTGCAGTGGTCCCAGCAGGC  3582

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3583  TGTAGCTCCAAAATTCAGCCATTAGATGTATGCATCAAAAGAACTGTCAAGAACTTCCTGCATAAAAAATGGAA  3656

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3657  GGAACAGGCTCGGGAAATGGCAGATACTGCATGTGATTCTGATGTCCTGCTTCAGCTGGTGCTTGTCTGGCTGG  3730

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3731  GTGAAGTGCTAGGTGTCATTGGGGACTGTCCAGAGCTAGTTCAGCGCTCCTTCCTGGTGGCTAGTGTTCTGCCT  3804

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3805  GGCCCCGATGGCAACATTAACTCACCTACAAGAAATGCTGACATGCAGGAGGAGCTAATTGCCTCCCTAGAGGA  3878

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3879  GCAACTGAAGCTGAGTGGGGAACATTCTGAGTCTTCCACTCCACGACCCAGATCATCTCCTGAAGAGACAATTG  3952

Query 1090  --------------------------------------------------------------------------  1089
                                                                                      
Sbjct 3953  AGCCTGAAAGTCTTCACCAGCTCTTTGAGGGTGAAAGTGAGACCGAGTCTTTCTATGGCTTTGAAGAAGCTGAC  4026

Query 1090  ------------------  1089
                              
Sbjct 4027  CTAGATCTGATGGAGATT  4044

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