Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11713
- Subject:
- XM_011248659.2
- Aligned Length:
- 4215
- Identities:
- 1420
- Gaps:
- 2682
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACTTGGATACAAGAGAATACAACTCCCCTCTATTTCCATAACTCAAAAAACATGAAGGAACTAAAGGAACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGACAGCGCAAAGATAATAGGCGTCCAGATTTGGAAATCTATAAGCCTGGACTTTCTCGACTAAGGAACAGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTAAAACTAAGGAGGCTTCTGGGAATGAGGAATTTAAGGATGAGATAGTAAATGACAGAGATTCTTCTGCTGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGAATGATACACAGCTTATTCAAGTTTGCAAGGAATTGGACAGCCAACAGCAAAATGGCCCTATAGATGCAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAATAGTCAGGCACAGGAAACTTTTCCAAAGACTGTTGGACTAGAGGACCGAAGTCTAAAGATCATCAAAAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCAAGAAACCAGACCTGCAGATCTACCAGCCTGGAAGGCGGTTGCAGACCATTACCAAAGAGTCAGCAGGCAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAGATGAAGAAGAGATCCTCAACCAAGTGGAGCAGTTGAGGATAGAGGAGGATGAGTGTAAGGGAGAAGCTAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAAGAAGAAGTTAATAACAAACCGGATAAAACCGAGATAGAAAAGCACCAAAGTAATGACCGTGTAAGAACTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAAGGGAGAAAAGGGAAAAAAGATTGAAAAGGGGGAGGGGTCAAAGAAGGTGGCTGATGACTCTGTCCCAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGCCTGGCTCTGTAAAGAGATACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCCTGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTGATTCCTTAGATGAGGACAGAGTTGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGCCTGATGTCCTAGGGTCCAGGAGGAGCTCAGAAAGGAAGAAGCATTTAGAAAGAAATTGGTCTGGCTGTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAGGGTGAACAGAAAAGCAATGGTAAAGAAAACCGAAGTGCCCTTCGTGTCACTTTTGATGCAGAAACCATGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGCAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACACCCGAGACAAGAACTTCGAGATCGTGGTCGTGGTATCCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GATTCTGCCTGCCCACACTGCCCTATCTGTCAGTTCATCAGGTTCTCCGGAGTCTACACCTTTGGGACCTCGAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTATTTGGATCTGGTAGTAAGGGATCTCGGAGTTGGGGCCGTGGAGGCACTACCCGCCGACTATGGGACCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AACAATCCTGACCAGAAGCCTGCCCTAAAAAGCCAGACACCTCAGCTACATTTCTTGGACACTGATGATGAAAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCCCTACATCTTGGGGTGATTCACGTCAGGCCCAAGCATCTTACTATAAATTTCAAAACTCTGATAACCCCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATTATTACCCTCGGACACCAGGCCCTGCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGCCCTACAAATGGTATGTATCCAGGGGCTTACTACCCGGGCTATCCTGCCCCCTCAGGACAATATGTGTGTAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCCTCTCCCTGCTAGCACCATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCAGGGACCGCATCAGCACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGGGCATGGAGAAGATGGCTCAGCTCAGAACTGAACTACTGCAGCTGTACGAGCGCTGTATTCTATTAGATAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGAATTCTCCGACAGTCAGAATGTAGATCAGATCCTGTGGAAGAACGCTTTCTATCAGGTGATTGAGAAGTTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCAGAGCAGATTCGGAACAGACTCTTGGAGCTCTTAGATGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGCAGTGACTTCTTTGATAGTTTGCTTCAGAAACTACAGGTTACTTACAAGTTCAAACTGGAGGACTACATGGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAACAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TATCTGAAGGCTCAGCACATTGCTCCCAAGAATGGGCGCCCCTATAACCAGTTGGCTCTACTGGCAGTGTATAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAGGAGGAAGCTTGATGCTGTATATTACTATATGCGCAGTTTAGCAGCCAGCAACCCTATCCTGACTGCCAAGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAGTCTCATGAGTTTATTTGAAGAGACTAAACGAAAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GATATGAGCCCTGATAAGTGGCGAAAAGGAAAGAAGTCTACTTTCCGGCATGTTGGGGATGACACTACTCGCCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGAGATTTGGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAGGAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGGTCTGGGCAGCCTGAGTCCCAGTGATCTGAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAG 2664
Query 1 ------------------ATGGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTCAAGGAGTTCCAGGTGTTACT 56
|||||||||||||||||||||||||||||||||||.|||||||||||.||.||.||
Sbjct 2665 CTGTTTACCCGGATTGGGATGGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCT 2738
Query 57 GCAGCACAGCCCCTCTCCCATTGGAAGTACCCGCATGCTGCAGCTTATGACCATCAATATGTTTGCAGTACACA 130
||||||.|||||.|||||.||||||||||||||.|||||||||||||||||||||||.||||||||.||.||.|
Sbjct 2739 GCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATA 2812
Query 131 ACTCCCAGCTGAAAGACTGCTTCTCGGAGGAGTGCCGCTCTGTGATCCAGGAACAAGCCGCAGCTCTGGGCTTG 204
||||||||.||||||||||||||||.||||||||.||.||||||||||||||||||||.|||.|..||||||||
Sbjct 2813 ACTCCCAGTTGAAAGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTG 2886
Query 205 GCCATGTTTTCTCTACTGGTCCGCCGCTGCACCTGCTTACTTAAGGAGTCCGCCAAAGCTCAGCTGTCCTCTCC 278
||.|||||||||||||||||||..||||||||.|||.||||||||||.||.||.||||||||||||||||||||
Sbjct 2887 GCTATGTTTTCTCTACTGGTCCAGCGCTGCACATGCCTACTTAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCC 2960
Query 279 TGAGGACCAGGATGACCAAGACGACATCAAGGTGTCTTCCTTTGTCCCGGACCTGAAGGAGCTGCTCCCCAGTG 352
|||||||||.||.||||||||.|||||||||||.||||||||.|||||||||||||||||||||||||||||||
Sbjct 2961 TGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTGCTCCCCAGTG 3034
Query 353 TCAAAGTCTGGTCAGATTGGATGCTCGGCTACCCGGACACCTGGAATCCTCCTCCCACATCCCTGGATCTGCCC 426
|.|||||||||||.|||||||||||.||||||||.|||||||||||||||||.||||||||..|||||||||||
Sbjct 3035 TGAAAGTCTGGTCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCC 3108
Query 427 TCGCATGTTGCTGTGGATGTATGGTCGACGCTGGCTGATTTCTGTAACATACTGACTGCAGTGAATCAGTCTGA 500
|.|||.||||||||||||||.|||||.||.||.|||||||||||||||||||||||||||||.|||||||||||
Sbjct 3109 TTGCAGGTTGCTGTGGATGTCTGGTCAACACTAGCTGATTTCTGTAACATACTGACTGCAGTCAATCAGTCTGA 3182
Query 501 GGTGCCACTGTACAAGGACCCGGATGATGACCTCACCCTTCTTATCCTGGAAGAGGATCGGCTTCTCTCGGGCT 574
|||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 3183 GGTGCCACTGTACAAGGACCCAGATGATGACCTCACCCTGCTTATCCTGGAAGAGGATCGGCTTCTCTCTGGCT 3256
Query 575 TTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGCTACGTGGAGAAAACCTCGGATAAGGTTATTGCAGCTGAC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGCTACGTGGAGAAAACCTCGGATAAGGTTATTGCAGCTGAC 3330
Query 649 TGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 TGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAA 3404
Query 723 GGGTGGAAAGTATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAACAC 796
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 3405 GGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAAAAC 3478
Query 797 GACTGGAAGATGAGGAGGAGGATGTGGTGATTGAAGACTTTGAGGAAGATTCAGAGGCTGAAGGCAGCGGAGGC 870
.|||||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.
Sbjct 3479 AACTGGAAGATGAGGAAGAAGATGTGGTGATTGAAGACTTTGAGGAAGATTCAGAGGCTGAAGGCAGTGGGGGT 3552
Query 871 GAGGATGACATCAGGGAGCTTCGGGCCAAGAAGCTGGCTCTGGCCAGGAAGATAGCTGAGCAGCAGCGTCGCCA 944
|||||||||||||||||.|||||||||||||||||||||||.||.|||||||||||||||||||||||||||||
Sbjct 3553 GAGGATGACATCAGGGAACTTCGGGCCAAGAAGCTGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCA 3626
Query 945 GGAAAAGATCCAGGCTGTCCTGGAGGACCACAGTCAGATGAGGCAGATGGAGCTCGAAATCAGACCTTTGTTCC 1018
||||||||||||||||||..||||.|||||.|||||||||||||||||||||||.||.||||||||.|||||||
Sbjct 3627 GGAAAAGATCCAGGCTGTTTTGGAAGACCAGAGTCAGATGAGGCAGATGGAGCTGGAGATCAGACCCTTGTTCC 3700
Query 1019 TCGTACCAGACACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCGCGGCTGCTGGAGAGCAGGAAGTACATC 1092
||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 3701 TCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCTCGGCTGCTGGAGAGCAGGAAGTACATC 3774
Query 1093 CTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGACGGCCTGGCCAAGGGGCAGGAGACAGACCACCGGGCTGG 1166
|||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 3775 CTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGACGGCCTCGCCAAAGGGCAGGAGACAGACCACCGGGCTGG 3848
Query 1167 GGGCTACGCCCGTGTGGTACAAGAGAAGGCCCGCAAGTCCATCGAGTTCCTCGAGCAGCGATTCGAGAGTCGGG 1240
||||||.|||||||||||.|||||.||||||||.||.|||||.|||||||||||.|.|.||||.||||||||||
Sbjct 3849 GGGCTATGCCCGTGTGGTGCAAGAAAAGGCCCGAAAATCCATTGAGTTCCTCGAACGGAGATTTGAGAGTCGGG 3922
Query 1241 ACTCTTGCCTGCGAGCCCTGACCAGCCGTGGCAATGAACTCGAATCCATCGCCTTCCGCAGTGAGGACATCACT 1314
||||.||||||||.|||.||||||||||||||||||||||.|||||.|||||||||||.|||||||||||.|||
Sbjct 3923 ACTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAACTTGAATCTATCGCCTTCCGAAGTGAGGACATTACT 3996
Query 1315 GGCCAGCTGGGTAACAACGATGATCTCATCCTGTCCTGCTGCCTCCACTACTGCAAAGACAAGGCTAAGGACTT 1388
||.||||||||||||||||||||.||.|||||.||.||||||||.||||||||||||||||||||||||||.|.
Sbjct 3997 GGACAGCTGGGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAGGCTAAGGATTA 4070
Query 1389 CATGCCCGCCAGCAAAGAGGAGCCAATCCGGCTACTGCGGGAGGTGGTGCTGTTGACGGATGACCGGAACCTGC 1462
|||||||.||||||||||||||||||||||.||..|.||||||||||||.||.||||.|||||.||||||||.|
Sbjct 4071 CATGCCCACCAGCAAAGAGGAGCCAATCCGCCTGTTACGGGAGGTGGTGTTGCTGACCGATGATCGGAACCTTC 4144
Query 1463 GTGTGAAGGCGCTCACAAGGAATGTTCCTGTACGGGACATCCCAGCCTTCCTCACGTGGGCCCAGGTGGGC 1533
||||.||||||||.|||||||||||.|||||..|||||||||||||||||||.||||||||||||||||||
Sbjct 4145 GTGTAAAGGCGCTGACAAGGAATGTGCCTGTGAGGGACATCCCAGCCTTCCTTACGTGGGCCCAGGTGGGC 4215
