Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11738
- Subject:
- XM_011246543.2
- Aligned Length:
- 4232
- Identities:
- 1668
- Gaps:
- 2323
Alignment
Query 1 ATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCTGATTACTATAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GATCATTAAAACGCCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAGCCTGGAGATGACATAGTCTTA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ATGGCAGAAGCTCTGGAAAAGCTCTTCTTGCAAAAAATAAATGAGCTACCCACAGAAGAAACCGAGATCATGAT 518
|||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||||||||.|||||||||||
Sbjct 1 ATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGAT 74
Query 519 AGTCCAGGCAAAAGGAAGAGGACGTGGGAGGAAAGAAACAG---GGACAGCAAAACCTGGCGTTTCCACGGTAC 589
||||||||||||||||||||||||.|||||||||||||||| ||.|||||||.|||||.||.||||||||||
Sbjct 75 AGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTAC 148
Query 590 CAAACACAACTCAAGCATCGACTCCTCCGCAGACCCAGACCCCTCAGCCGAA---TCCTCCTCCTGTGCAGGCC 660
|||||||||||||||||||.|||.||||||||||||||||.|||||||.||| ||||||.||||||||||||
Sbjct 149 CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTGTGCAGGCC 222
Query 661 ACGCCTCACCCCTTCCCTGCCGTCACCCCGGACCTCATCGTCCAGACCCCTGTCATGACAGTGGTGCCTCCCCA 734
||..||||||||||.|||||.||||||||.||||||||.|.||||.|.||||||||||||.|||||||.||.||
Sbjct 223 ACAACTCACCCCTTTCCTGCTGTCACCCCAGACCTCATTGCCCAGCCTCCTGTCATGACAATGGTGCCCCCTCA 296
Query 735 GCCACTGCAGACGCCCCCGCCAGTGCCCCCCCAGCCACAACCCCCACCCGCTCCAGCTCCCCAGCCCGTACAGA 808
||||||.|||||.||..|.||.||.|||||||||||||.|||||||||.|||||||.|||.|||||.||.||||
Sbjct 297 GCCACTTCAGACTCCTTCACCGGTACCCCCCCAGCCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGA 370
Query 809 GCCACCCACCCATCATCGCGGCCACCCCACAGCCTGTGAAGACAAAGAAGGGAGTGAAGAGGAAAGCAGACACC 882
|.|||||.||||||||.|||.|||||||.||||||||||||||||||||.||.|||||||||||||||||.|||
Sbjct 371 GTCACCCGCCCATCATTGCGACCACCCCCCAGCCTGTGAAGACAAAGAAAGGGGTGAAGAGGAAAGCAGATACC 444
Query 883 ACCACCCCCACCACCATTGACCCCATTCACGAGCCACCCTCGCTGCCCCCGGAGCCCAAGACCACCAAGCTGGG 956
||||||||.||||||||.|||||||||||.|||||||||||.|||.||||.||||||||||||.||||||||||
Sbjct 445 ACCACCCCTACCACCATCGACCCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGG 518
Query 957 CCAGCGGCGGGAGAGCAGCCGGCCTGTGAAACCTCCAAAGAAGGACGTGCCCGACTCTCAGCAGCACCCAGCAC 1030
.|..|||||||||||||||.|.||||||||.||||||||||||||.||.||.|||||.|||||||||||||..|
Sbjct 519 TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGCAGCACCCAGGGC 592
Query 1031 CAGAGAAGAGCAGCAAGGTCTCGGAGCAGCTCAAGTGCTGCAGCGGCATCCTCAAGGAGATGTTTGCCAAGAAG 1104
|||||||||||||||||.||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.
Sbjct 593 CAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAAGAAA 666
Query 1105 CACGCCGCCTACGCCTGGCCCTTCTACAAGCCTGTGGACGTGGAGGCACTGGGCCTACACGACTACTGTGACAT 1178
||.||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.|||||||||||||||||
Sbjct 667 CATGCTGCCTATGCCTGGCCTTTCTACAAGCCTGTGGATGTGGAGGCACTGGGTCTGCACGACTACTGTGACAT 740
Query 1179 CATCAAGCACCCCATGGACATGAGCACAATCAAGTCTAAACTGGAGGCCCGTGAGTACCGTGATGCTCAGGAGT 1252
||||||.||.||||||||||||||||||||||||||||||||.|||.||||.||||||.|.|||||.|||||.|
Sbjct 741 CATCAAACATCCCATGGACATGAGCACAATCAAGTCTAAACTAGAGTCCCGAGAGTACAGAGATGCCCAGGAAT 814
Query 1253 TTGGTGCTGACGTCCGATTGATGTTCTCCAACTGCTATAAGTACAACCCTCCTGACCATGAGGTGGTGGCCATG 1326
||||||||||.||||||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.||||||
Sbjct 815 TTGGTGCTGATGTCCGATTGATGTTCTCCAACTGCTACAAGTACAACCCCCCTGACCATGAAGTGGTAGCCATG 888
Query 1327 GCCCGCAAGCTCCAGGATGTGTTCGAAATGCGCTTTGCCAAGATGCCGGACGAGCCTGAGGAGCCAGTGGTGGC 1400
||.||.||.||||||||||||||.|||||||||||||||||||||||.||.||||||||.||||||||.||..|
Sbjct 889 GCTCGAAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTAC 962
Query 1401 CGTGTCCTCCCCGGCAGTGCCCCCTCCCACCAAGGTTGTGGCCCCGCCCTCATCCAGCGACAGCAGCAGCGATA 1474
.||||||||.||.||||||||.||.||.||.|||||.||.|||||.||||||||.||.||||||||||||||.|
Sbjct 963 AGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGCAGCGACA 1036
Query 1475 GCTCCTCGGACAGTGACAGTTCGACTGATGACTCTGAGGAGGAGCGAGCCCAGCGGCTGGCTGAGCTCCAGGAG 1548
|.||.||.|||||.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.||||||||.
Sbjct 1037 GTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAA 1110
Query 1549 CAGCTCAAAGCCGTGCACGAGCAGCTTGCAGCCCTCTCTCAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAA 1622
||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1111 CAGCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAA 1184
Query 1623 AGACAAGAAGGAAAAGAAAAAAGAAAAGCACAAAAGGAAAGAGGAAGTGGAAGAGAATAAAAAAAGCAAAGCCA 1696
.||||||||||||||||||||.|||||||||||||.||||||.||||||||.||.|||||||||||||||.|||
Sbjct 1185 GGACAAGAAGGAAAAGAAAAAGGAAAAGCACAAAAAGAAAGAAGAAGTGGAGGAAAATAAAAAAAGCAAAACCA 1258
Query 1697 AGGAACCTCCTCCTAAAAAGACGAAGAAAAATAATAGCAGCAACAGCAATGTGAGCAAGAAGGAGCCAGCGCCC 1770
||||||.||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||..|||
Sbjct 1259 AGGAACTTCCTCCCAAAAAGACAAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACCC 1332
Query 1771 ATGAAGAGCAAGCCCCCTCCCACGTATGAGTCGGAGGAAGAGGACAAGTGCAAGCCTATGTCCTATGAGGAGAA 1844
|.|||||.||||||.||||||||.|||||.||.||.||.|||||.|||||.|||||.|||||.|||||||||||
Sbjct 1333 ACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGAA 1406
Query 1845 GCGGCAGCTCAGCTTGGACATCAACAAGCTCCCCGGCGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCAC 1918
|||||||||.||..|.||.||||||||.||.||.||.||||||||.|||||.||.||.|||||.||.||||||.
Sbjct 1407 GCGGCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCAGTCAA 1480
Query 1919 GGGAGCCCTCCCTGAAGAATTCCAACCCCGACGAGATTGAAATCGACTTTGAGACCCTGAAGCCGTCCACACTG 1992
||||.||.||.||.||.||.|||||||||||.||||||||.||.||||||||||||||||||||.||.|||||.
Sbjct 1481 GGGAACCATCACTTAAAAACTCCAACCCCGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTACACTA 1554
Query 1993 CGTGAGCTGGAGCGCTATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGATGTGAT 2066
||.|||.|||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 1555 CGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGACGTGAT 1628
Query 2067 TGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACA 2140
|||.||.||.||||||||||||||.|||||.|||||.||||||||||||.||||.||.||||||||||||||||
Sbjct 1629 TGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACA 1702
Query 2141 GCGAAGACTCCGAAACA------GCT----------------------------------------------TT 2162
|.||||||||.|||||| ||| .|
Sbjct 1703 GTGAAGACTCTGAAACAGAGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAGCAT 1776
Query 2163 CTGCACCA-------------GTGGAG--------ACTTCGTGT-CCCCAG----------------------G 2192
|..||||| .||.|| |..||.||| |||||| .
Sbjct 1777 CATCACCATCACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCCCCACCTCCACAGCA 1850
Query 2193 GCCT--TCC----------CCGTATCA-CAGTCACGTGCAG--------------------TGCGGCC-----G 2228
|||| ||| |||.|.|| ||| || |||| |.||.|| |
Sbjct 1851 GCCTCCTCCACCCCCACCTCCGCAGCAGCAG-CA---GCAGCAACCTCCACCCCCACCACCTCCGCCCTCCATG 1920
Query 2229 CTTCAG-----------GGAGATG-------------------------CTTCGCTGGT-----TTCTGGTGGA 2261
|..||| .|.|||| ||.|.|.||| |.||||
Sbjct 1921 CCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGG---- 1990
Query 2262 TGTGGAGCAGACTGCAGCTGGCCA----------------------GCCGCATC-----GCCAGTCT------- 2301
.||..||||| |||| |||.|.|| |||..|||
Sbjct 1991 ---------AACCACAGCT-GCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCT 2054
Query 2302 ---GCTGCTGGCCCTGC--CATCACCTGGGCCCCAGCCATTGCCT---------ACCCCTCCCCAGAGTGTGCT 2361
||.||.||..|||| |.|||||| |||||||||| ||| ||.||.||||| .||
Sbjct 2055 GCCGCAGCCGGAGCTGCCTCCTCACCT--GCCCCAGCCA---CCTGAGCACAGCACTCCACCCCA------TCT 2117
Query 2362 C------GTTGCTGTGTTGGCTGCTCC----------------------------------------------- 2382
| ..|||||||.|..||.||||
Sbjct 2118 CAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACC 2191
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2192 GAGCTGCTGCTCTGCCCCCAAAGCCTACCCGACCCCCAGCTGTGTCCCCTGCCCTGGCCCAGCCCCCCCTGCTC 2265
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2266 CCACAACCACCAATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTCACCTC 2339
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2340 CATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGG 2413
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2414 TGCAGTCCCAACCCCCACCGCCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAG 2487
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2488 CCACCGCCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCA 2561
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2562 CTTGCCATCCATGCCCTTTTCTGCTCATATTCAGCAGCCCCCACCACCCCCAGGACAGCAACCTACTCACCCAC 2635
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2636 CCCCAGGACAGCAGCCCCCACCACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTTCCCCCCGG 2709
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2710 CACCACAAGTCAGACCCCTACTCAGCTGGTCATCTTCGTGAGGCTCCCTCTCCGCTTATGATACATTCCCCTCA 2783
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2784 GATGCCACAGTTCCAGAGCCTGACCCATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGTAAAGG 2857
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2858 GCAGGGCTGAGCCACAGCCACCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGCCTCACCGGCTGCC 2931
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 2932 GTGCCTATGCTGTCCCAGGAGCTGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGA 3005
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3006 GAAGATTCACTCACCAATCATTCGCAGCGAGCCTTTCAGCACCTCACTTCGACCAGAGCCCCCCAAGCACCCAG 3079
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3080 AGAACATCAAGGCCCCAGTCCACCTGCCCCAGCGGCCTGAGATGAAGCCTGTAGACATAGGGAGGCCTGTGATC 3153
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3154 CGGCCTCCAGAGCAGAGTGCACCCCCACCAGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCCAAAAACACC 3227
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3228 AGTGGCACCCAAAAAGGACCTGAAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCA 3301
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3302 CCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAG 3375
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3376 AGGGAAAAGGCCCTGAAGGCTCAGGCTGAGCATGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAG 3449
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3450 GAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGC 3523
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3524 AGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCT 3597
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3598 GCCCCCCAGGCCCAGAGCTCCCAGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCA 3671
Query 2383 -------------------------------------------------------------------------- 2382
Sbjct 3672 GGAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAATTGACATGAATTTCCAGAGTGATCTTTTGTCAATATTTG 3745
Query 2383 -------------- 2382
Sbjct 3746 AAGAAAATCTTTTT 3759
