Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11742
- Subject:
- NM_015348.2
- Aligned Length:
- 5666
- Identities:
- 769
- Gaps:
- 4894
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGGGAAGCGGGCGGGAGGAGGAGCAACCGGAGCCACCACCGCCGCCGTCTCCACGTCCGCCGGGGCCGGGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAACCTGCGGCCGCCCGTAGCGGGGGCCCGCGGAGCGCGGCCGCCGGCCTCCTAGGCGCGCTGCACCTGGTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGACCCTCGTAGTGGCTGCGGCGCGGGCCGAGAAGGAAGCATTCGTTCAGTCAGAGAGCATAATAGAAGTACTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGTTTTGATGATGGAGGGCTACTACAGACCGAGACAACACTTGGACTCAGTTCATATCAGCAGAAAAGTATATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTCTACCGGGGGAATTGCAGGCCCATACGATTTGAGCCACCAATGCTGGATTTCCATGAACAACCAGTTGGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCCAAAAATGGAAAAAGTCTACTTACATAATCCTAGTTCTGAAGAAACGATTACTTTAGTATCAATATCTGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACAACATCACATTTTCATGCATCATTTTTTCAAAATAGGAAAATTCTTCCAGGAGGAAATACATCATTTGATGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTTTTTCTTGCAAGAGTAGTAGGAAATGTAGAAAATACTTTATTTATTAATACATCTAATCATGGGGTATTTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTACCAGGTATTTGGTGTTGGAGTTCCAAATCCATATCGATTGAGGCCGTTCCTTGGGGCCAGAGTCCCTGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATAGCAGTTTCTCACCTATAATAAACATCCACAATCCTCACAGTGAGCCTTTACAGGTTGTAGAAATGTACTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAGTGGAGGAGACCTTCACCTAGAACTCCCAACGGGTCAACAAGGAGGTACCAGAAAACTGTGGGAAATTCCTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTTATGAAACCAAGGGAGTGATGAGAGCCAGTTTTTCATCTAGAGAAGCAGATAATCACACAGCCTTCATAAGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATAAAGACTAATGCTTCAGACAGCACAGAGTTTATCATTCTTCCTGTTGAGGTTGAAGTTACAACAGCTCCTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AATTTATTCCTCAACTGAAATGTTAGATTTTGGTACACTAAGAACACAAGATCTACCAAAAGTTTTAAACCTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATTTATTAAATTCAGGAACAAAAGATGTACCAATAACAAGTGTTCGACCTACACCACAAAATGATGCTATAACG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTACACTTTAAACCAATTACATTAAAAGCATCAGAAAGTAAATACACCAAGGTTGCAAGCATTAGTTTTGATGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATCGAAGGCAAAAAAGCCATCTCAGTTTTCTGGGAAAATAACAGTTAAAGCAAAGGAAAAGAGTTATTCTAAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTGAAATACCATATCAAGCAGAAGTTTTAGATGGTTATTTGGGATTTGATCATGCTGCAACATTATTTCACATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CGAGACAGCCCTGCTGATCCTGTGGAAAGGCCAATTTACCTTACTAACACTTTCAGTTTTGCGATCCTCATTCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGATGTGTTGCTACCAGAAGAAGCCAAAACAATGTTTAAAGTTCACAACTTCAGCAAACCAGTCTTAATTCTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTAATGAATCAGGATACATTTTTACCCTGCTTTTTATGCCTTCCACATCATCCATGCACATTGATAACAACATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTACTTATTACCAATGCTTCTAAATTTCATTTACCCGTGCGGGTATACACAGGCTTTTTAGATTACTTTGTATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCCCCCCAAAATAGAGGAACGTTTCATAGATTTTGGAGTACTGAGTGCTACAGAAGCAAGTAATATTTTATTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATTATAAACAGCAATCCAATTGAGTTGGCTATAAAAAGTTGGCATATCATAGGAGACGGTTTATCAATAGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTGTAGCTGTGGAAAGAGGCAATAGAACTACAATAATTTCAAGCCTGCCAGAGTTTGAAAAATCCTCTTTATC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGATCAATCATCGGTAACATTAGCTTCAGGCTATTTTGCAGTCTTCAGAGTCAAACTTACTGCAAAAAAATTAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGGGGATTCATGATGGAGCCATCCAGATCACAACAGACTATGAGATCCTGACAATCCCTGTGAAGGCTGTGATT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCAGTAGGCTCACTGACCTGCTTCCCTAAGCACGTGGTTCTTCCACCTTCCTTTCCAGGGAAAATAGTTCATCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAGTTTAAATATTATGAATTCCTTCTCACAGAAGGTAAAAATACAGCAAATACGATCTTTGTCAGAAGATGTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GATTTTACTATAAACGATTACGGGGCAATAAGGAAGACTTGGAGCCAGGAAAAAAATCAAAGATTGCAAACATT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TATTTTGATCCTGGACTACAGTGTGGGGATCATTGCTATGTTGGCTTGCCTTTTCTATCCAAATCTGAACCCAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGTGCAGCCTGGTGTAGCCATGCAGGAAGATATGTGGGATGCTGACTGGGATTTGCATCAAAGCCTGTTCAAGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATGGACAGGAATAAAGGAAAATTCAGGTCATAGATTGAGTGCTATATTTGAAGTAAATACAGACCTTCAAAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATATAATATCAAAAATCACTGCTGAGCTCTCCTGGCCTTCCATACTTAGCTCACCCCGGCACTTGAAATTTCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTTACTAATACAAACTGCTCCTCAGAAGAAGAGATTACTTTAGAAAATCCTGCAGATGTTCCTGTCTATGTTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGTTTATTCCTCTGGCTTTATATTCCAACCCTTCAGTGTTTGTAGATAAGTTAGTATCAAGGTTTAACTTGAGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAGGTGGCAAAGATAGATTTGAGAACACTAGAATTTCAAGTCTTCAGAAACAGTGCTCATCCACTGCAGAGTTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AACAGGATTTATGGAGGGCCTCTCTCGACATTTAATTTTAAACCTAATTTTAAAACCTGGAGAAAAGAAATCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCAAAGTAAAGTTTACTCCAGTTCACAACAGAACTGTTTCTTCACTTATCATAGTCAGAAATAACCTGACTGTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATGGATGCTGTGATGGTCCAAGGACAAGGAACAACTGAGAACTTGAGGGTGGCAGGCAAGCTTCCAGGTCCAGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAGCTCCTTACGCTTTAAAATCACGGAAGCATTGTTAAAAGATTGTACAGATAGTTTAAAACTAAGAGAACCAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATTTCACATTGAAAAGAACATTTAAGGTAGAGAATACAGGACAACTTCAAATTCACATAGAAACCATTGAAATC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGTGGATACTCATGTGAAGGATATGGCTTTAAAGTTGTTAATTGTCAAGAGTTTACTCTAAGTGCCAATGCTTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TAGAGATATAATCATATTGTTTACTCCTGATTTTACAGCTTCTAGAGTTATTCGGGAACTGAAGTTTATAACAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCAGTGGCTCTGAGTTTGTATTTATATTGAATGCATCCCTTCCTTACCATATGTTAGCAACCTGTGCAGAAGCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTACCCAGACCTAACTGGGAACTGGCTCTGTATATCATCATCTCAGGAATAATGAGTGCACTGTTTCTTTTGGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CATTGGAACAGCCTATTTGGAAGCTCAAGGAATATGGGAGCCATTTCGAAGGCGGCTATCCTTTGAGGCCTCGA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ACCCGCCCTTCGATGTGGGAAGGCCATTTGATCTCAGGAGAATCGTTGGTATTTCATCTGAAGGAAACTTGAAC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ACACTCAGCTGTGACCCCGGTCACAGTAGGGGGTTCTGTGGAGCAGGCGGTTCATCATCCCGACCCAGTGCCGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAGTCATAAGCAGTGTGGCCCATCGGTCCACCCACACAGCAGTCACAGCAATAGAAACTCAGCTGACGTGGAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ACGTCAGAGCCAAAAACAGTTCAAGTACCTCTAGTAGGACTTCTGCTCAAGCAGCTTCTTCACAGTCTGCTAAC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AAAACAAGCCCCCTTGTCTTAGATTCGAACACAGTGACTCAAGGTCATACAGCGGGCAGAAAGTCCAAAGGGGC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAAGCAGAGCCAGCACGGCAGCCAGCACCATGCCCACAGCCCGCTGGAGCAGCACCCTCAGCCTCCTCTGCCAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CGCCAGTGCCTCAGCCCCAGGAGCCGCAGCCTGAAAGGCTGTCTCCCGCCCCCCTCGCACACCCTTCCCACCCA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GAACGTGCCAGCAGCGCGAGGCACAGTTCCGAGGACTCGGACATCACCAGTCTCATAGAAGCCATGGACAAAGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CTTCGACCACCATGACTCCCCAGCCCTAGAAGTGTTTACAGAGCAGCCTCCATCGCCATTGCCAAAAAGCAAAG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGAAAGGAAAACCTCTTCAGCGCAAGGTGAAACCACCTAAGAAGCAAGAGGAAAAGGAGAAGAAGGGAAAGGGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AAGCCACAGGAAGATGAGCTGAAGGACTCTTTGGCTGATGATGATAGCTCCTCCACCACCACAGAGACCTCCAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CCCTGACACAGAACCGCTCCTCAAGGAGGATACAGAAAAGCAAAAGGGAAAACAAGCCATGCCTGAAAAACATG 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAAGTGAAATGTCTCAAGTGAAGCAAAAAAGCAAAAAACTCTTAAATATTAAGAAAGAAATCCCAACAGATGTG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AAACCCAGTTCATTAGAACTACCATATACTCCCCCTTTGGAAAGTAAGCAACGTAGAAATCTCCCAAGCAAGAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCCTCTTCCAACTGCAATGACAAGTGGATCCAAATCACGAAATGCCCAGAAAACAAAAGGTACAAGTAAGTTAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TGGATAACAGACCACCTGCCCTAGCAAAATTCCTCCCGAATAGTCAAGAATTAGGCAACACCAGTAGCTCAGAG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GGTGAAAAAGACTCTCCTCCACCGGAGTGGGATTCCGTTCCAGTTCACAAACCTGGCAGCTCTACTGATAGTCT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TTATAAACTTTCTCTGCAAACCCTCAACGCAGACATTTTCTTAAAACAACGCCAGACCTCACCGACACCTGCTT 4810
Query 1 -----------------------------------------------------------------ATGAGTTCT 9
|..||.||
Sbjct 4811 CCCCGTCTCCCCCAGCTGCCCCCTGCCCCTTTGTGGCCCGGGGCAGCTACAGCAGCATCGTCAACAGCAGCTC- 4883
Query 10 CTCTTTGCTTCTTTTTCA--AGTGACCCTAAAATAAAACAGCCAAATGGAAGCAAACACAAGTTGACAAAGGCA 81
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4884 ----------------CAGCAGTGACCCTAAAATAAAACAGCCAAATGGAAGCAAACACAAGTTGACAAAGGCA 4941
Query 82 GCCTCGCTCCCGGGCAAGAACGGCAACCCCACTTTTGCTGCAGTCACGGCTGGCTACGACAAGAGCCCAGGTGG 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4942 GCCTCGCTCCCGGGCAAGAACGGCAACCCCACTTTTGCTGCAGTCACGGCTGGCTACGACAAGAGCCCAGGTGG 5015
Query 156 GAATGGCTTTGCTAAAGTTTCTTCAAACAAAACAGGTTTCTCCAGCAGCCTTGGCATTTCACACGCTCCTGTTG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5016 GAATGGCTTTGCTAAAGTTTCTTCAAACAAAACAGGTTTCTCCAGCAGCCTTGGCATTTCACACGCTCCTGTTG 5089
Query 230 ACAGCGATGGCTCAGACAGCTCGGGTTTGTGGAGTCCCGTCAGCAACCCAAGCAGCCCTGACTTCACTCCCCTC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5090 ACAGCGATGGCTCAGACAGCTCGGGTTTGTGGAGTCCCGTCAGCAACCCAAGCAGCCCTGACTTCACTCCCCTC 5163
Query 304 AATTCGTTCTCCGCCTTTGGAAACTCTTTTAATCTAACTGGTGAAGTTTTCAGCAAACTCGGATTATCTCGATC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5164 AATTCGTTCTCCGCCTTTGGAAACTCTTTTAATCTAACTGGTGAAGTTTTCAGCAAACTCGGATTATCTCGATC 5237
Query 378 GTGCAATCAGGCCTCACAGAGGAGCTGGAACGAGTTTAATAGTGGCCCTTCATACCTTTGGGAGTCGCCAGCGA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5238 GTGCAATCAGGCCTCACAGAGGAGCTGGAACGAGTTTAATAGTGGCCCTTCATACCTTTGGGAGTCGCCAGCGA 5311
Query 452 CAGATCCCAGTCCTTCCTGGCCAGCCAGTTCCGGCTCCCCGACCCACACAGCCACATCGGTCCTCGGTAACACC 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5312 CAGATCCCAGTCCTTCCTGGCCAGCCAGTTCCGGCTCCCCGACCCACACAGCCACATCGGTCCTCGGTAACACC 5385
Query 526 AGCGGCCTGTGGTCCACCACTCCATTCAGCAGCTCCATTTGGTCCAGCAACCTTAGCAGCGCCCTTCCCTTCAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5386 AGCGGCCTGTGGTCCACCACTCCATTCAGCAGCTCCATTTGGTCCAGCAACCTTAGCAGCGCCCTTCCCTTCAC 5459
Query 600 CACTCCAGCAAACACGCTGGCAAGCATCGGCCTCATGGGCACAGAAAACTCCCCTGCTCCTCACGCTCCCTCCA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5460 CACTCCAGCAAACACGCTGGCAAGCATCGGCCTCATGGGCACAGAAAACTCCCCTGCTCCTCACGCTCCCTCCA 5533
Query 674 CCTCCAGTCCAGCTGACGACTTGGGACAGACCTACAACCCGTGGCGGATATGGAGCCCCACGATTGGAAGAAGA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5534 CCTCCAGTCCAGCTGACGACTTGGGACAGACCTACAACCCGTGGCGGATATGGAGCCCCACGATTGGAAGAAGA 5607
Query 748 AGCTCGGACCCTTGGTCTAATTCGCACTTTCCTCACGAGAAT 789
||||||||||||||||||||||||||||||||||||||||||
Sbjct 5608 AGCTCGGACCCTTGGTCTAATTCGCACTTTCCTCACGAGAAT 5649
