Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11758
- Subject:
- XR_002958679.1
- Aligned Length:
- 6374
- Identities:
- 799
- Gaps:
- 5564
Alignment
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 1 AGGCGCTGTGAGAGGCGGTAGCGGCGGCGGCGGCGGTGGTATCGGCGGCAGCTGTGAGGGGGTTCCGGGAAGAT 74
Query 3 GGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTG 148
Query 77 TTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAG 222
Query 151 GATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGAGCAAAGTGCCTGCATTCGTGAGGATGAT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGAGCAAAGTGCCTGCATTCGTGAGGATGAT 296
Query 225 TGCTCCCGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAATGCGTACCCCTACTGTAGAACAATTGTAACGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCTCCCGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAATGCGTACCCCTACTGTAGAACAATTGTAACGA 370
Query 299 ATGAATATATGAAAGATGATTTCTTCATTAAAATCGAAACATGGCACAAACCAGACTTGGGAACATTAGAAAAT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATGAATATATGAAAGATGATTTCTTCATTAAAATCGAAACATGGCACAAACCAGACTTGGGAACATTAGAAAAT 444
Query 373 GTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGT 518
Query 447 TGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGG 592
Query 521 GACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATC 666
Query 595 AAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAAACGGATATTTACAAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAAACGGATATTTACAAA 740
Query 669 CTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAG 814
Query 743 ACGAGACTCAGAAAGAACTAGAAACATTACGTAA----------TCAAGGTCAAGT------------------ 788
|||||||||||||||||||||||||| |||| ||.|.|.|||.|
Sbjct 815 ACGAGACTCAGAAAGAACTAGAAACA----GTAAGACTGGCTGTTCTATGGCAATTCTCTAATTTTCCCTTTTC 884
Query 789 ---GAGGGGA-ACAAGC---------GCAGCCAGT---------GATGAG------------------------ 816
.|..|.| |||.|| .||| ||| ||.|||
Sbjct 885 TAAAACTGTATACATGCTTGGTAAATACAG--AGTTAGAATTAGGAAGAGTGTTGTTAAAAATCATTCCCTATT 956
Query 817 -------------------------------------------------------------------------- 816
Sbjct 957 CTACTTATTCTCATCAAAATGGAGTTTCTTAGACACTGCTATTCCTTCACATATTCTGATCTCTCTTTTGTTGA 1030
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1031 GCATCTTGCGTGAAGGTAGACTAGAGTTTTCTCAGTCTAGAATTGGTTACCTGTTAAATATCTAATGGTTCTGT 1104
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1105 ATTCTTTCTTACACACTAGCTTTAGTTCTGTAGGCTGGTTCCTGGTTCACAGTCGTTTTAGACACTTTGTCAGA 1178
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1179 CTAAGTTGCTTTTGGCTCAGTTTGTATCACAGCAAGCTTAACAAATGTTAACATGATAAGTCCTAGTTCGCTTT 1252
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1253 TTTTGTAGAAAAGGTAAGGCTAATGGTATTGTTACTAATTCTGGAAATGCCTCCTCTGCTTCCCCCAACTGGCA 1326
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1327 GTGATCCTTATTTCTTCCTAAGCTTTGGGCAGATTCAGGTGATCCTTGGGCAGGAGGTCAGCATGCCACAGTTC 1400
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1401 AGTGTTACAGCCCATCCCAGCTGCTCCCCACCACCAGTGGGCAGGGCCGGCAGCCAGTGGGTGTCTTCTCTCTC 1474
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1475 CTCGGGATGGATTCTTCCCTGGCTTCCTCTTGCATGTGTCTGGTTTTGTTTTTGCCCTGGGCCATGCTTGTCTT 1548
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1549 CAGTTGGCAGTAAGGCCCCATGGGTGAAACAAACCCAAGGAATGTCCAGGGCCTGCTAGTGGTTTCCATGTGGT 1622
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1623 CATCTCGAGTCCTGCCAGCAGGTCCAGTTTTGGAAGCCCTGCAGGTGTGAGCGTTTGACAGACGCCTGCGTGTG 1696
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1697 AGGCAGAAACTCCATTTAATCACAGGAGAATGGCAGCAAATCAGATTCTTTGGCACAAAAGGAAACCTATTTTT 1770
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1771 CTGGCACATAGCATCGTAAAGAATCTGTTTAAAATTGCTTACTTTTGGTGATTACAGCAGATCTGCTTCTAATT 1844
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1845 AGTTTTATATAAACCTTCTGAGAGGACTAGGACATATTTTCTTTATAAGGCAATAAAATATTTTAACCTTATCT 1918
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1919 TATACATAAAGTAAACTATAGGCAGACTCCAACTTATGAATGGATTTTGTTCCAAAAAATTTTAAGTTGATTGT 1992
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1993 TTGAAATTTGGAACATATTTTCCCATAGAGACAATGTTATAAATTAGGGTTTGGTTTCTAGACTAGCCAGCATA 2066
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2067 ATATGCCTCTTTGACCCCAATTTCTCATACTAATATTAGGACTCTGAGTTCTGGATATAGGGAATAGGGTGATG 2140
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2141 AGATGGCAAGAGTGGAAGATACCCCCCTCATTCCTTATTTTTAGTCTAGCCACAGGCAAAACACTTAAATAGGC 2214
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2215 AAGAGCAGATCATGGGCACTTCCTACCTTTCTTTCTAGGCCTCTCTCCCACTTCTGTGTTCCCTTTTTCAAGAG 2288
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2289 TCAGGTGCCTTTCTCTGACTCTAACAAGCACCCCCCTGGCCCTCGCTACCCTATCCAGTTTTAGTCCCATTTGC 2362
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2363 CTTGTCTGGTTTCACTCCCTCCAAGTGCCCAAGGCTTCAGGAATACCTGCCAGCTCTGCCTTTGGCTCTTCCAA 2436
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2437 GCAGCTGGTGGGTGTCCACTGAACATGAAACAGAAGCAGCAAGAGACACCCAAACACGCTAAGCCCATGATGCA 2510
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2511 GCACTGGCATTTCCTACAAGGATTTACCAACAGCTCAAACCCTTGGGAAAGAGCCCTTCTCTCAGTTTTTAATT 2584
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2585 TTTATGCTGAAGAACTGTGTGTCACATGGGGAAGAGTAGTTACCATTGACCAGGTGATAAGCCCTATCTGGTTT 2658
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2659 GGACTCTAAACCCTACCTATCTCTGGACCCCTTGGACAGAACTTGACTGAGATTTCTTCCCCCAGGGAAGTGCT 2732
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2733 CTTGCTTCTCTAACAAGTCCTCAGCCTCACGATACCTGAACACAGAATGGTCCCAGCCTCAACACGCTGTGACC 2806
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2807 CTCCGCTGTGGAGCTGGTGACTCTTGCTCTCACCTATGGCAGTGGGCCTGCAGGTGCAGCTGCTGCTCCATGCA 2880
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2881 GATCAGTTATTTGTGAGTTGGGAATTGCACTCGAGAAGAAGGTGTAAGATAGACAAGTAAAAGCCCAATTCCTT 2954
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2955 AGTGTCACCATTCTTATACCCACATTGCTGAAACTGATTAACCCCCTCATAAAGCTGGTGGAAAATCTATCATT 3028
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3029 GGTTCAGAGTGAGGGTACATAGCAGTTGCTTTGTCAAATATCTCAAAAACATTTTAAGACAAATTTCACCATTA 3102
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3103 AGTGGTGCATCTTAACGTTGAATCCCATTTAAGTTATTTTGCTGTAGGTCATTGGGGAGTGCTTGGTTCCACAC 3176
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3177 ACAGAATCAAGATGCTGCTGCTTTGAGTCCTAATGGTGGCTTTGTGAAAGCATCCTCAGAATCTGGGCAGCATC 3250
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3251 AAGCCTGCAGGCCAAGAATGCCTACCCAGAAAGCACCTGCCTCCTGAAGAGGCATCCCATTTTAGAGTCCTCTT 3324
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3325 CACACGCAGAAATTTCTTTTTCCTTGAGGTCCTGACCCCTGACACCTGATGATAGATTTTAATGACATTATAAT 3398
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3399 GCTCTTAATTCACAAATATTTTAAGAATTGGATTTCTTTCAAATGGGTTTTGGCCCTGGAGAGAACTAGCATCT 3472
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3473 TGAGAGGTTAGGCACACGAGGAATGCCCCTGCCTATGATCTGCAGGGAACTGCCCTGGAGTTGAGGCTCAGCAG 3546
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3547 CTGAAGGAGGACTTTAGGTAAACATTTTACCTGTTTGTTCTTAACTGGCACCTCCGGTTCCGGGGTGGGGGTGA 3620
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3621 GGATGTGTTGAGTTTTAACGTATTTATTGCATTTGTTTGTTTTCTGTTCATTTCGTTTTTTGTTTTCTCATTGA 3694
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3695 GTGGTGTCACTTGTCTGGAGGCTATTGTTATGAATGCCTGTCCTTTCTAATACATCTGTGTGCCCTTCATGGTT 3768
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3769 TGCCATACATTGTTTCTGTGCTTGCCTTTTCTCCCTTTCATTCTCCCTCCTTGCCTTTTCTCCCTTTCATTCTC 3842
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3843 CCTCCTTTCAGTAAACTTCCTTTAAAGGACTCCACTGAGAGACCCTGTTCTCAGAAGCAGCAAAGAGGTGTGGC 3916
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3917 CCACACCCTCATGGCTTGCTTGTCTGGCCTAGGGACTATGCAAATATGGACCAGACCCTTGGGGTATTTTCTCA 3990
Query 817 -------------------------------------------------------------------------- 816
Sbjct 3991 CATTATATTGGCAAACAATTTGTTTACCCATTGGCTGTTTTTGATAATTTTTTATCAGTCTGCAGGCTTTTGTT 4064
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4065 TTTTACAGTTAAGGATAGATAAACCTTTTTTGTGCTAAGAAAAGCCTTTTGCAAGAATGTCTTCAAACCAAGGT 4138
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4139 TATTTGAGGGGCCACAGAACTTCATTCTTAATGTGGATATGGTTATGAACATCACTTCATAATCTCTTCTAGAT 4212
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4213 CTTTTTTCTCCCCTTGCTTACTAACCCCTATTTAGAGTCTGATTTCAGCAGCTCACAATTTTATTTTACGTTTA 4286
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4287 GATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGGTCAGAGAC 4360
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4361 AATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCT 4434
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4435 GACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAA 4508
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4509 CCACGTGTGTATATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGA 4582
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4583 TACACACACTTGTGTATATATGTACATACAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACC 4656
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4657 TATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGATTTTAATAATTATCAGAGT 4730
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4731 AATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGGACCA 4804
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4805 ACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGC 4878
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4879 AGTAGACTCCCACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTA 4952
Query 817 -------------------------------------------------------------------------- 816
Sbjct 4953 TTTATAACTATTTATTTCTGGATGGTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTA 5026
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5027 CAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAAAAAAATTTCTGGTTTTTATTGGATTTTT 5100
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5101 GTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCTGATTTATAATAA 5174
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5175 ATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCT 5248
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5249 GTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTT 5322
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5323 GGAAACTATGCAAATGGTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTT 5396
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5397 CTTGTGGGAACACACACTTCAAGGAGGAGATAGTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCT 5470
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5471 GGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGA 5544
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5545 CGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTAATTTAA 5618
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5619 TTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTT 5692
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5693 TTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTA 5766
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5767 ACCTCCTGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCT 5840
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5841 GCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAA 5914
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5915 GGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACAT 5988
Query 817 -------------------------------------------------------------------------- 816
Sbjct 5989 CCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATA 6062
Query 817 -------------------------------------------------------------------------- 816
Sbjct 6063 ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCC 6136
Query 817 -------------------------------------------------------------------------- 816
Sbjct 6137 TTTTAATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCG 6210
Query 817 -------------------------------------------------------------------------- 816
Sbjct 6211 GCGCATGGATTTTAATGTTTTTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT 6284
Query 817 -------------------------------------------------------------------------- 816
Sbjct 6285 TTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAAATTTAAACAAAAAATAAATTTGATCA 6358
Query 817 ---------- 816
Sbjct 6359 CAAAATGCCA 6368
