Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11838
Subject:
NR_146934.1
Aligned Length:
2384
Identities:
565
Gaps:
1806

Alignment

Query    1  ------------------------------AT-------------GGAGCATGC---CTTTACCCCGT-TGGAG  27
                                          ||             |.|||.|||   ||    ||.|| ||..|
Sbjct    1  AAGGCTCCTCAGCCGAGCGCCGAGCGGTCGATCGCCGTAGCTCCCGCAGCCTGCGATCT----CCAGTCTGTGG  70

Query   28  CCCCTGCTTTCCACTG-GGAATTTGAAGTACTGCCTTGTAATTCTTAATCAGCCTTTGGACAACTATTTTCGTC  100
            |.|||.|...|||.|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   71  CTCCTACCAGCCATTGTGGAATTTGAAGTACTGCCTTGTAATTCTTAATCAGCCTTTGGACAACTATTTTCGTC  144

Query  101  ATCTTTGGAACAAAGCTCTTTTAAGAGCCTGTGCCGATGGAGGTGCCAACCGCTTATATGATATCACCGAAGGA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  ATCTTTGGAACAAAGCTCTTTTAAGAGCCTGTGCCGATGGAGGTGCCAACCGCTTATATGATATCACCGAAGGA  218

Query  175  GAGAGAGAAAGCTTTTTGCCTGAATTCATCAATGGAGACTTTGATTCTATTAGGCCTGAAGTCAGAGAATACTA  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  GAGAGAGAAAGCTTTTTGCCTGAATTCATCAATGGAGACTTTGATTCTATTAGGCCTGAAGTCAGAGAATACTA  292

Query  249  TGCTACTAAGGGATGTGAGCTCATTTCAACTCCTGATCAAGACCACACTGACTTTACTAAGTGCCTTAAAATGC  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  TGCTACTAAGGGATGTGAGCTCATTTCAACTCCTGATCAAGACCACACTGACTTTACTAAGTGCCTTAAAATGC  366

Query  323  TCCAAAAGAAGATAGAAGAAAAAGACTTAAAGGTTGATGTGATCGTGACACTGGGAGGCCTTGCTGGGCGTTTT  396
            ||||||||||||||||||||||||||||||||                                          
Sbjct  367  TCCAAAAGAAGATAGAAGAAAAAGACTTAAAG------------------------------------------  398

Query  397  GACCAGATTATGGCATCTGTGAATACCTTGTTCCAAGCGACTCACATCACTCCTTTTCCAATTATAATAATCCA  470
                                                                                      
Sbjct  399  --------------------------------------------------------------------------  398

Query  471  AGAGGAATCGCTGATCTACCTGCTCCAACCAGGAAAGCACAGGTTGCATGTAGACACTGGAATGGAGGGTGATT  544
                                           |||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  -------------------------------GGAAAGCACAGGTTGCATGTAGACACTGGAATGGAGGGTGATT  441

Query  545  GGTGTGGCCTTATTCCTGTTGGACAGCCTTGTAGTCAGGTTACAACCACAGGCCTCAAGTGGAACCTCACAAAT  618
            |||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||||||
Sbjct  442  GGTGTGGCCTTATTCCTGTTGGACAGCCTTGTATGCAGGTTACAACCACAGGCCTCAAGTGGAACCTCACAAAT  515

Query  619  GATGTGCTTGCTTTTGGAACATTGGTCAGTACTTCCAATACCTACGACGGGTCTGGTGTTGTGACTGTGGAAAC  692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  GATGTGCTTGCTTTTGGAACATTGGTCAGTACTTCCAATACCTACGACGGGTCTGGTGTTGTGACTGTGGAAAC  589

Query  693  TGACCACCCACTCCTCTGGACCATGGCCATCAAAAGC-------------------------------------  729
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct  590  TGACCACCCACTCCTCTGGACCATGGCCATCAAAAGCTAACCTGTTGACTGGCATCCATAAGTGTGCCTCTGCC  663

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  664  TTATCTCATTTCTCAACAGTTCATTGCTCAACAAGAACGATTCACCTGGGTTTGCAAGAATCTAAACCTCTCTA  737

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  738  GGGGAAGCCCACTGGGTTTAAAGATGTTAGTGTTTAGATAATACAGGTAACATTATAAATGACAGATCTCAATT  811

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  812  TTATAGTAGTGGGAAAGATACATGCTAAGAAAGCAAATAAGCTCTATTATATTCGGTTGGAACCTAATGGGAAT  885

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  886  CATTCCACTATACAATTCAGTACTGATTATTCTTCTTACATTATTAATCATTCCATTTATCCTAGAAAATTGTT  959

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct  960  TTTAATTTGAATCAGAGAAAACTGTTGAGGTTCCTCTTGGAGTCTAGAACATCCTTAAATGTCTAACAACAAGG  1033

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1034  GCTACCTCTGAGTACCTTTTAGTATTAGTTTTCTGTATATGATATATATTATCTTATACTGAAAAAAAATTCCT  1107

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1108  TTCAGATTGGGGTGTTAGAAGTGCACCAGGTCACTCTGACCTTATTACTGTCTTTGGTATTGTCTTAAATAAAT  1181

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1182  CAAGAATCATTGACCTAATTGTTAAATTTAAAAATAGGTAGTTAGCAATAGGTGGAAAGAGAAATGATGTGAAA  1255

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1256  GATAAATGATGATTCGTGGAGCCCTACTCACACATTAACCCCCAAATTCAAAAGTAAGAATGCAAAAGTCTAGA  1329

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1330  GGGGGTAACAGTCTGCATCATCATCACAACCTAAATGGAGAAAGCTGTGCAGAGGAAACTTAAGCATAAAAATT  1403

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1404  GAATTCGTTTCTGACATACCTTAGACTGAAAAACTGTTGGTTCATCCAGAAGTGTATTCATATTACCAGAAAAT  1477

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1478  GAGTTTGTCTATGGGGATACATGAACTTCATATACTAAGGAGCCTAACTCCAAAGCCTGCGTTCTCATCCCAGT  1551

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1552  CTGATATTCACCTAAGTTTCCGGACCCTTTTCCTTAGCTGTAAAATGGAAGCGGTTGGACTGATGGTGTCTGAG  1625

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1626  GTTCTTTCCCACACTGAAATTCTAAATATTGACACTTAGCAGTCATAGGGCTGATAATACACACAGTTACTGAC  1699

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1700  TTAGCCTAAACAACCTGGTGCATCGAAATGTATTCACCTTTCTTTTGTAAAGAGACCATCTTCTATCTTCTTTC  1773

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1774  CACCTTTCTCTGTTTTATGAAACCAACTGTTGACATACAAACCATGATTGAAGGAGAACCTGTCCAACATGTTT  1847

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1848  TATGTACACAAATCCCTATGTTGCTATAAGAAAAGTGAAAGTAACTGTTTTCTTCTTGGTGCTATGACAGTGTG  1921

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1922  AGACTCAGGTTGTCTGTAGAGAATGAAAGGAGCAGTGGCCCGCGTGATTGTGGCATTTAAGGAGCAGTGGCCCA  1995

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 1996  TGTGACTGTGGCATTTTCGGCACTTTTCATTACTTTCTGCTTGACCGGAAGTTGAGGCTTAGCTATGTTTCCAT  2069

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 2070  CTTCAGTTTCTGAAGACTAGTTATATATTCCTTACTAGAAATATATTCATAATATATAAAAGAAATATATCTGT  2143

Query  730  --------------------------------------------------------------------------  729
                                                                                      
Sbjct 2144  GATTTTAAAATTTTGCTACCAAAGAATGCATGTTCTGTGTGCCCTGAAAATGTTACCAGTGTTAATAAATGGAT  2217

Query  730  ----------------  729
                            
Sbjct 2218  ACTTATCAAAAAAGAA  2233

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