Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11896
- Subject:
- NR_163264.1
- Aligned Length:
- 4153
- Identities:
- 1400
- Gaps:
- 2752
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGTGGGACACAAACAAAGTGCCCCCAAACAGGCTGGAGTGAGCGGAGCGGCAACGGCGGCGGCGCCGGCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACGCGCGCGGCGGCGGCTCCCTCCCAACCTCCCCCTCCCCTCCCCTCAGTCCCCTTCCCCTTCCCCACCCCGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCTGGGAACACGCGAGCCGTCGCCGCGCTCCCCAAACAACCGCCTGCCCTCGGCCAACCGTCCCCAACGGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCAGCGCGCGGCTCCCGGGCCCCCTCGCTCCTCCCCTCTGGCCCCTCCGAGCGCTGGGGGTGCTTCCCTCCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCTCCTCGCACTCCCACTCGCGGGCACGCCGGTGGCTGTGCCGCCATGCCCCACCACAGGCTGCTCACGGGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAGGCGCGGCGGCCCGAGATAGGGGCCCCTGAGCCTCCCGGGGGAGGAGAGAGGCAGCGAGCCGCGCTCCGCCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCCCCCCGGGCCGCCGCCGCCGCCGCCTCGCCGCCCCAGCCTGGCGGGAGAAGGAGGAGGAGCAGCAGGCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGGGCCCGGCGCCGCCGCCCGCAGGACATTTCTGATTTATTTGCATCCTTGAAGAGCATCTGTAGAAGAGGAA 592
Query 1 -------ATGGGTGTGAAAACATTTACTCATAGCTCCTCTTCCCACAGCCAGGAAATGCTTGGAAAGCTAAATA 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTAAAAGATGGGTGTGAAAACATTTACTCATAGCTCCTCTTCCCACAGCCAGGAAATGCTTGGAAAGCTAAATA 666
Query 68 TGCTGCGAAATGATGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAAAATCTTCCGGGCACATAAGGTG 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGCTGCGAAATGATGGACATTTTTGTGATATCACTATTCGTGTCCAGGACAAAATCTTCCGGGCACATAAGGTG 740
Query 142 GTACTAGCAGCTTGCAGTGATTTCTTTCGCACCAAACTTGTAGGCCAAGCCGAGGATGAGAACAAGAATGTGTT 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTACTAGCAGCTTGCAGTGATTTCTTTCGCACCAAACTTGTAGGCCAAGCCGAGGATGAGAACAAGAATGTGTT 814
Query 216 GGATCTGCATCATGTTACAGTGACTGGCTTTATACCTCTTTTAGAATATGCTTACACAGCCACTCTATCAATTA 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGATCTGCATCATGTTACAGTGACTGGCTTTATACCTCTTTTAGAATATGCTTACACAGCCACTCTATCAATTA 888
Query 290 ACACAGAAAATATTATTGATGTTCTAGCAGCAGCCAGCTATATGCAAATGTTCAGTGTTGCCAGCACCTGCTCA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACACAGAAAATATTATTGATGTTCTAGCAGCAGCCAGCTATATGCAAATGTTCAGTGTTGCCAGCACCTGCTCA 962
Query 364 GAGTTCATGAAATCAAGCATTTTATGGAATACACCCAACAGCCAACCTGAAAAGGGTCTAGATGCTGGACAAGA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAGTTCATGAAATCAAGCATTTTATGGAATACACCCAACAGCCAACCTGAAAAGGGTCTAGATGCTGGACAAGA 1036
Query 438 AAATAATTCTAACTGCAATTTTACTTCTCGAGATGGGAGCATTTCTCCCGTGTCCTCAGAGTGCAGTGTGGTAG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAATAATTCTAACTGCAATTTTACTTCTCGAGATGGGAGCATTTCTCCCGTGTCCTCAGAGTGCAGTGTGGTAG 1110
Query 512 AAAGAACCATTCCTGTCTGCCGAGAATCCCGGAGAAAGCGCGAAAGCTACATTGTTATGTCTCCTGAAAGTCCT 585
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1111 AAAGAACCATTCCTGTCTGCCGAGAATCCCGGAGAAAGCGCAAAAGCTACATTGTTATGTCTCCTGAAAGTCCT 1184
Query 586 GTAAAGTGTGGCACACAAACAAGCTCACCCCAGGTATTGAATTCTTCAGCTTCCTACTCAGAAAATAGAAACCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GTAAAGTGTGGCACACAAACAAGCTCACCCCAGGTATTGAATTCTTCAGCTTCCTACTCAGAAAATAGAAACCA 1258
Query 660 ACCAGTTGACTCTTCCTTAGCTTTTCCTTGGACTTTTCCTTTTGGAATTGATCGAAGGATTCAGCCTGAGAAAG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCAGTTGACTCTTCCTTAGCTTTTCCTTGGACTTTTCCTTTTGGAATTGATCGAAGGATTCAGCCTGAGAAAG 1332
Query 734 TTAAGCAAGCAGAAAATACCCGGACTTTAGAATTACCTGGCCCATCTGAGACCGGTAGAAGAATGGCTGATTAT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTAAGCAAGCAGAAAATACCCGGACTTTAGAATTACCTGGCCCATCTGAGACCGGTAGAAGAATGGCTGATTAT 1406
Query 808 GTGACTTGTGAGAGCACAAAAACTACCTTGCCTTTAGGTACCGAAGAAGATGTCCGGGTCAAAGTAGAAAGATT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTGACTTGTGAGAGCACAAAAACTACCTTGCCTTTAGGTACCGAAGAAGATGTCCGGGTCAAAGTAGAAAGATT 1480
Query 882 AAGTGATGAGGAGGTCCATGAGGAAGTGTCCCAGCCTGTCAGTGCATCTCAGAGTTCGCTGAGTGATCAGCAGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTGATGAGGAGGTCCATGAGGAAGTGTCCCAGCCTGTCAGTGCATCTCAGAGTTCGCTGAGTGATCAGCAGA 1554
Query 956 CAGTTCCAGGAAGTGAACAAGTCCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAGGCTCAGTAGAT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGTTCCAGGAAGTGAACAAGTCCAAGAGGACCTTCTGATTAGTCCACAGTCTTCCTCTATAGGCTCAGTAGAT 1628
Query 1030 GAAGGCGTTTCTGAGGGCTTGCCTACACTTCAAAGCACGTCTAGCACTAATGCTCCTCCGGATGATGATGATCG 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAAGGCGTTTCTGAGGGCTTGCCTACACTTCAAAGCACGTCTAGCACTAATGCTCCTCCGGATGATGATGATCG 1702
Query 1104 ATTGGAAAATGTTCAGTATCCCTACCAACTCTACATTGCTCCTTCCACCAGCAGTACAGAGCGACCAAGTCCAA 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ATTGGAAAATGTTCAGTATCCCTACCAACTCTACATTGCTCCTTCCACCAGCAGTACAGAGCGACCAAGTCCAA 1776
Query 1178 ATGGTCCCGACAGACCTTTTCAGTGTCCAACCTGCGGGGTGCGATTCACCCGTATTCAGAACCTAAAGCAGCAC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATGGTCCCGACAGACCTTTTCAGTGTCCAACCTGCGGGGTGCGATTCACCCGTATTCAGAACCTAAAGCAGCAC 1850
Query 1252 ATGCTCATCCACTCAGGAATTAAACCATTTCAGTGTGACCGCTGTGGGAAAAAGTTCACCAGGGCTTACTCGCT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGCTCATCCACTCAGGAATTAAACCATTTCAGTGTGACCGCTGTGGGAAAAAGTTCACCAGGGCTTACTCGCT 1924
Query 1326 AAAGATGCATCGCCTAAAGCATGAAGGGCATCCCAGGAAATCAGCTTCTAGATCTAGCTCTGCCACTAACTGCT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AAAGATGCATCGCCTAAAGCATGAAGGGCATCCCAGGAAATCAGCTTCTAGATCTAGCTCTGCCACTAACTGCT 1998
Query 1400 GT------------------------------------------------------------------------ 1401
||
Sbjct 1999 GTTGATTAAACCTGTCACTTTACACATGAAAAAGCTTGAAACTTAGAGAAAGATAAAATTGATTTCCTAGTACC 2072
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2073 GGACTACTTAAACCAGGAACAAGAAGAGACCCTTGTTCAATATGATCTTGGAGAACACGGTTTTGAAAGCAACT 2146
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2147 CCTCTGTTCAAATGCCTGTCATTTCACAGTACCACTCCAAAGGCAAGGAACCATGATTGACAACAGTCAAGCTG 2220
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2221 TGGATGAAATGACCAGGAACGGAGAATGAATTCCAAGAGGTGGTTTTTGAAAGAGCAAGAGGAAAGAAAAAAGA 2294
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2295 AAAGAAGGAAAGAAGAATAAAGAAGAGAAACGTTCATCTGCAAAGTATGAAGCTGTAATTCTGAAATACACATC 2368
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2369 CAAGTGAATGAGAATTAAAAATTTTCTAAATATTAATACTAACTGGGAAAAAAAAACTAGTGTGAAGTTTACAG 2442
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2443 TTAGAAGAAACAGACCCAAAGTTGCCAGAAGGTACCTGAAATGAGTGACATCAGGTATTTGGAAGGAGTAAGAT 2516
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2517 CATAAACTGTATTCATTTTCTTCCTTGTACAAAGTGATGACTTCTAATGCTTATATCTCAAGGTATTTTTTAAA 2590
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2591 AAAGCAACGGTCCCTAATAGAGTAAAATTTGGTTTTGGTCCAAGTTCCCAATAATGTATTTAATGTTTCTGTTG 2664
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2665 TTTACTGGTGCCTCCCGTTGCATCAGGTAGAGATTGCCTGCCTCTTTGTAGGGCAGCCTTGTGGCACCTTATGT 2738
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2739 CCAACTTGGAGGATAGTATATGGCTTCTTTGTGCCTCTACTATCTTTTCAAAAGCCATTTTATAAAAATCCTAG 2812
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2813 GTAGCCTATTTTAATATTTAAATATATATATTTGTGAAAGAACTTTTAGAACAGACCTTTTCTTTTTACTTTAA 2886
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2887 AATTCCTGTATTTCCATTTTTAAGAGTAAATTTAATCTCCAGGATTTAGAAGTGTCTTTCCAGAGAAGCATAAT 2960
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 2961 GAGAAAGTCAGACTGAGGTAATAAGACCAGAATTAAGTGATAGAAGAAACTGTTGTTTGGTTAAAGGACACAGA 3034
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3035 TTTGAAGGAAAAAAATTTTGATGTAACAATTTTTTAAATAAAATTTTGTTTTTCTGTAATGTCATATTTGCTGC 3108
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3109 TACAGTAGCTCAATATTTTACAGGGCTAACATAAAGCTGGCTCCATTTAAAAACTGGAGTACTTCCTAGTGCAG 3182
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3183 CCAGCCTAGGCGGAAACTGTACACCATGGTCTTCCAGATGGGTGACTGATGGCTTTGGGTAGCTGATGCATGCT 3256
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3257 TTAATATTTGCCTATAGCCCGGCAGCAAGGAAGTCGGGGCGGGGGGACTTTTTTACCCTGCCAGTTATAGCATT 3330
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3331 GTGATTCTTTCTGGGCACTGGCATTTTGTGAAACTCTCAAGGGAAGGTGATGCAGGGGAGAAAATGTGAATTAA 3404
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3405 ATTACATAGATGGGTGTTTTTATGTCTTCTACCCCTTTCCTAGAATTAGTACAACTCTTAACTGTGCCAGTCCC 3478
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3479 CAGTTCACCAGCTTTGTATCCAGTCGTCATCTCATTCAAGTATGGCTTTACTTGGTGACACTGGCCATAGCTAA 3552
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3553 GTTAACTTGGCATGTTTGACTTTTGACAATAACAAAAATGGTTTTGGATTTTGTTTTATTTCCAAAAAATGTAT 3626
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3627 ACAATATCAGAACTTCACATTTTATATACTAGTATCTGGCTATTAGTATTTTACAGGAACCATAGTTCTTGGTG 3700
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3701 ACTACATATATATATATATTTTTGTGACCTTTTTTGTAAACTAAGTGCCGTTTCAACGTTACAATCATTTTTAG 3774
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3775 GGTTATTGTAATCAATGTGAATATCATGTTTTTTCAAATCTGTTCTGAGCCTATAGTGTTTGCTTTGTGAACAT 3848
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3849 GTGTATTGTATATATTCTGTATAGTTATATTGTACTGAAATTAGCTTGTTTGATATAAGGAAAATATGTATTGA 3922
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3923 GTACCTTTTTGCTAGCCTGATTGTTTAATCTTTTTAAAAAAGGTTTAAACTTTTTTTAAAAAAAAAATCTTTAA 3996
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 3997 ACTGGCCTTTATTACATGGTCACACATAAAGTTGCAGTTAGGAAAGGGATGGGCAGGGAAAAACTAGTTTTGAG 4070
Query 1402 -------------------------------------------------------------------------- 1401
Sbjct 4071 TGTCTTTAGATAGAAACATGAGACTAAGGTTTGATTTTGTTTTCGTTTTCTCATTAAAATATCTTATGCTTTAT 4144
Query 1402 --------- 1401
Sbjct 4145 GGAATAAAA 4153
