Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11964
- Subject:
- XR_001751300.2
- Aligned Length:
- 2546
- Identities:
- 1275
- Gaps:
- 1271
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAGTTAAGAGTGGCGCCAGGGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGG 74
Query 1 -------------ATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAG 148
Query 62 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCAAGAGTCTGGGTCTCCGGGCCAACCTGAGGGCAACCAAGTTGTTAAAAGCCTTGAAAGGCTACATTAAACAT 222
Query 136 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGCAAGAAAAGGAAATGAGAATCAGGATGAAAGTCAAACTTCTGCATCCTCTTGTGATGAGACTGAGATACA 296
Query 210 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAGCAACCAGGAAGAAGCTGAGAGACAGCCACTTGGCCATGTCACCAAAACAAGGAGAAGGTGCAAGACTG 370
Query 284 TCCGTGTGGACCCTGACTCACAGAATCATTCAGAGATAAAAATAAGTAATCCCACTGAATTCCAGAATCATGAA 357
|||||||||||||||||||| ||||||||||||
Sbjct 371 TCCGTGTGGACCCTGACTCA------------------------------------------CAGAATCATGAA 402
Query 358 AAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAGCAGGAAAGCCAGGATCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAA 476
Query 432 TGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGTCAT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGCTGTTTCCTCAGGTAACAGAGATTCAAAGGTACCTTCAGAAGGAAAGAAATCTCTCTACACAGATGAGTCAT 550
Query 506 CCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTTAAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCAAACCTGGAAAAAATAAAAGAACTGCAATCACTACTCCAAACTTTAAGAAGCTTCATGAAGCTCATTTTAAG 624
Query 580 GAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACT 698
Query 654 GA---AGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTA 724
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAAGCAGCAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTA 772
Query 725 CTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGG 846
Query 799 TCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGT--------------------------------- 839
|||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAGGTAAAGAAATCACTCCAAAATGTAATCATG 920
Query 840 -------------------------------------------------------------------------- 839
Sbjct 921 AACAAGATTTCACATGGACTATATAAAAAAAAAATTTTTAATTGGCAAATAATATTCGTACATACTCATAGGGT 994
Query 840 -------------------------------------------------------------------------- 839
Sbjct 995 ACATAGTGATGTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTGAGATGAGGTCTCGCTCTGTCGCCCAGGC 1068
Query 840 -------------------------------------------------------------------------- 839
Sbjct 1069 TGGAGTGCAGTGGCGCAATCTCAGCTCCCTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTTCTGCCTCAGCC 1142
Query 840 -------------------CAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TCCCGAGTAGCTGGGACTACAGGTTTTCAGCTGCTACTAAAGATAATGAGCATAAGCGTTCACTGACCAAGACT 1216
Query 895 CCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 CCAGCCAGAAAGTCTGCACATGTGACCGTGTCTGGGGGCACCCCAAAAGGCGAGGCTGTGCTTGGGACACACAA 1290
Query 969 ATTAAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGACTC 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 ATTAAAGACCATCACGGGGAATTCTGCTGCTGTTATTACCCCATTCAAGTTGACAACTGAGGCAACGCAGACTC 1364
Query 1043 CAGTCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACACAAA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CAGTCTCCAATAAGAAACCAGTGTTTGATCTTAAAGCAAGTTTGTCTCGTCCCCTCAACTATGAACCACACAAA 1438
Query 1117 GGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GGAAAGCTAAAACCATGGGGGCAATCTAAAGAAAATAATTATCTAAATCAACATGTCAACAGAATTAACTTCTA 1512
Query 1191 CAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 CAAGAAAACTTACAAACAACCCCATCTCCAGACAAAGGAAGAGCAACGGAAGAAACGCGAGCAAGAACGAAAGG 1586
Query 1265 AGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGAT--------------------- 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 AGAAGAAAGCAAAGGTTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAATAATTTTTTAACATCTTG 1660
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1661 TAAATATTCCTGTATTCTCAACTTTTTTCCTTTTGTAAATTTTTTTTTTTTGCTGTCATCCCCACTTTAGTCAC 1734
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1735 GAGATCTTTTTCTGCTAACTGTTCATAGTCTGTGTAGTGTCCATGGGTTCTTCATGTGCTATGATCTCTGAAAA 1808
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1809 GACGTTATCACCTTAAAGCTCAAATTCTTTGGGATGGTTTTTACTTAAGTCCATTAACAATTCAGGTTTCTAAC 1882
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1883 GAGACCCATCCTAAAATTCTGTTTCTAGATTTTTAATGTCAAGTTCCCAAGTTCCCCCTGCTGGTTCTAATATT 1956
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1957 AACAGAACTGCAGTCTTCTGCTAGCCAATAGCATTTACCTGATGGCAGCTAGTTATGCAAGCTTCAGGAGAATT 2030
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2031 TGAACAATAACAAGAATAGGGTAAGCTGGGATAGAAAGGCCACCTCTTCACTCTCTATAGAATATAGTAACCTT 2104
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2105 TATGAAACGGGGCCATATAGTTTGGTTATGACATCAATATTTTACCTAGGTGAAATTGTTTAGGCTTATGTACC 2178
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2179 TTCGTTCAAATATCCTCATGTAATTGCCATCTGTCACTCACTATATTCACAAAAATAAAACTCTACAACTCATT 2252
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2253 CTAACATTGCTTACTTAAAAGCTACATAGCCCTATCGAAATGCGAGGATTAATGCTTTAATGCTTTTAGAGACA 2326
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2327 GGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCACCAAATGTACTTCTTATTCATTTTATGGAAAAGACT 2400
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2401 AGGCTTTGCTTAGTATCATGTCCATGTTTCCTTCACCTCAGTGGAGCTTCTGAGTTTTATACTGCTCAAGATCG 2474
Query 1318 ------------------------------ 1317
Sbjct 2475 TCATAAATAAAATTTTTTCTCATTGTCATA 2504
