Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11984
- Subject:
- XR_001748745.2
- Aligned Length:
- 2813
- Identities:
- 1414
- Gaps:
- 1399
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGGGGCTGCTAAATGCAACATCTTCAGGCCATTACAACGTGCGATATGAATTTTTTTTTTGCTGGGCGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTGTGAAGCTCAGAACGAGGACATGAGTCAAGAAGAGTTTTCTTTCTAGGTCAATAGGAGGAACTGGTCTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGCAAGGAGTGGAAGCCAACAGGAGCAAAAGTAATTGGGGCCTCCTATGGAGGAACTCTGCCAAAAGGAAAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTTGGATTTGCCATCTCAGGAATGGAAGAAGGGGGCGGAGACCCTTTGGGGCTTTTGTGCCCAGTGGGCCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGAAAAGCTCGCACTTTACAGAGGCGGCAAGACTAGGGTGGAGGAAAGCTCAAGGGCCATCGCTGGGTGCTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGTGGCGGGCAGAAACGGGACTGGCAGTGCCCACACGTGTGCGTTCTCCCCGTCCGCCCGAAGGAGCTACCTG 444
Query 1 ---------------------------------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGG 35
|||||||||||||||||||||||||||||||||||
Sbjct 445 TGCACCCTGCCTCCGGCTCTCCTGAGCAGAGAGATCCTGATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGG 518
Query 36 GGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAA 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAA 592
Query 110 CCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCAGTGTCTCCCAGAAGGTCTGTGAGTGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGG 666
Query 184 AGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGCCAGGGCGAGTCACAGAAGCAGATCCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCA 740
Query 258 CCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCC 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCCTCGGTTCTTCAACCAGCTCTTCTCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCC 814
Query 332 TCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCAACACCAGCCAGTACACATATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTG 888
Query 406 CGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGGGCCCTGGTGGGCTGGAGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGT 962
Query 480 AAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTAT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAATCTGGCCCGCTATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTAT 1036
Query 554 TCACATCGAAGGAGTGTCACTACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCACATCGAAGGAGTGTCACTACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGA 1110
Query 628 GTGGTCAAGGCTGATGAGAGAGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGGTCAAGGCTGATGAGAGAGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGA 1184
Query 702 GGGTGCTGTGCCGTTCCTGGTCAGTGCCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGGTGCTGTGCCGTTCCTGGTCAGTGCCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAA 1258
Query 776 TTGCTGATGTGTGCCAGCGTCATGGGCTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTCCTGCTGTCA 849
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGCTGATGTGTGCCAGCGTCATGGGCTATGGCTGCATGTGGAT------------------------------ 1302
Query 850 CAGACACACAGGCATCTCCTGGATGGGATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGC 923
|||||||||||||||||||||||||||||||||||||||
Sbjct 1303 -----------------------------------GGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGC 1341
Query 924 AGCAGGCCTGCAATGCTCTGCACTTCTTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AGCAGGCCTGCAATGCTCTGCACTTCTTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGG 1415
Query 998 CCAGCTACCTTTTCCAGCAGGACAAGTTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGC 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CCAGCTACCTTTTCCAGCAGGACAAGTTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGC 1489
Query 1072 CGCCGTGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CGCCGTGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGA 1563
Query 1146 CCAGGCCTTTGTCCTTGCCCGGTACCTGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGC 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 CCAGGCCTTTGTCCTTGCCCGGTACCTGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGC 1637
Query 1220 CTGAGTTTGTCAATGTGTGTTTCTGGTTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCAC 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 CTGAGTTTGTCAATGTGTGTTTCTGGTTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCAC 1711
Query 1294 GAAAGGCTGTCAAAGGTGGCCCCCGTGCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GAAAGGCTGTCAAAGGTGGCCCCCGTGCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCA 1785
Query 1368 GCCCCACGGGACCCGGGGCAACTTCTTCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GCCCCACGGGACCCGGGGCAACTTCTTCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACT 1859
Query 1442 TCCTCCTCAACGAGCTGGAGCGGCTAGGCCAGGACCTG------------------------------------ 1479
||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TCCTCCTCAACGAGCTGGAGCGGCTAGGCCAGGACCTGTGAGCCTTCTCTGTCTTGCTGCCGGCCTTGATACCA 1933
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1934 CCCCTCACCCGCAGAGTCACTGCATTCCCTCCCAGCCTTTGAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCC 2007
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2008 AGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATAAGGTGAA 2081
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2082 ACCCTGTCTCTACTAAAAATACAAAAATTAGCCGAGCATGGTGGCCTGTGCCTGTAAACCCAGCTACTCAGGAG 2155
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2156 GTTGGGGCAGAATTGCTTGAACCCAGGGGGCAGAGGTTGCAGTGAGCCGAGATTGCACCCCTGCACTCCAGGCT 2229
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2230 GGGCAACAGTACGAGACTCTGTTCCAAAAAAAATAAAAAAGAACAGCCTTTTTAGGCCACAGTGACCTGCGCAA 2303
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2304 TGTTTATATGCTTTGACCTACTAACTTTCTCCTAACTAAATATTTGATTTTAGGAGAGTGTTTAAATAAATTAC 2377
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2378 AGTATGTCTATATGATGAAATGTTATTTTGCCATTAAAATTTTGTTTACAAAGATAATTTTTATTGACATAAAA 2451
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2452 ATAACTTTAATGTAATTTATGTTGAAAAAGCTGAATACAAGTCTTTATATAGAGTAATATTTGAGCTGTGTTCA 2525
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2526 AAAATACATAGGAAAAGACTGATAAAATGAAATATGGCAAAATGTTAATAGTTTTCCCTGGAATAGGATAATAG 2599
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2600 GCAATTTTAAAACAGACTCCTTTAAAAAAACAAACAAACAAAAAAAACATAGACTTCTTTATATCTTTTGAGCT 2673
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2674 CCCTCCCTTTTATTATGTAATGAATATGTGTTGCTTTTGTAATAGGAAAATAATAAAGTTAAAATTTCAACTGC 2747
Query 1480 - 1479
Sbjct 2748 A 2748
