Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11984
- Subject:
- XR_001781535.1
- Aligned Length:
- 2185
- Identities:
- 1167
- Gaps:
- 861
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCTATTCTGAAAAGTCCATTGTGTACCTTGTCACCAGCTCGTCTGATCCTTCTCTGAGCCCTCCTGAGCTGGA 74
Query 1 -------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGGGGACCCAGTGGCTGTGGAAGCCTTGC 61
||||||||||||.||.|||||....||||.|.|||||||||.|||||||||||.|||||||
Sbjct 75 AGATTTCATCCTGATGGCTGACTCAAAACCACTCAGGACCCTGGATGGGGACCCCGTGGCTGTGGAGGCCTTGC 148
Query 62 TCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAACCAGTGTCTCCCAGAAGGTCTGTGAG 135
|||.||.||||||||||.|||||||.|||||||||||||.|||.||.|||||||.|||..||||||||||.||.
Sbjct 149 TCCAGGACGTGTTTGGGATTGTTGTAGATGAGGCCATTCTGAAGGGGACCAGTGCCTCTGAGAAGGTCTGCGAA 222
Query 136 TGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGGAGCCAGGGCGAGTCACAGAAGCAGAT 209
||||||||||||||.||.||.||||||||||||||.||||||||||.|||||||||||||||.|.|.|||||||
Sbjct 223 TGGAAGGAGCCTGAAGAACTCAAGCAGCTGCTGGACTTGGAGCTGCAGAGCCAGGGCGAGTCCCGGGAGCAGAT 296
Query 210 CCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCACCCTCGGTTCTTCAACCAGCTCTTCT 283
|||||||||.||.|||.|||||||||.||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 297 CCTGGAGCGCTGCCGGACTGTGATTCACTACAGTGTCAAGACTGGTCACCCCCGGTTCTTCAACCAGCTCTTCT 370
Query 284 CTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCCTCAACACCAGCCAGTACACATATGAA 357
|.|||||.|||||||||||||||||.||||||||.|||||.||||||||||||||.|||||||||||||||||.
Sbjct 371 CAGGGTTAGATCCCCATGCTCTGGCTGGGCGCATCATCACGGAGAGCCTCAACACTAGCCAGTACACATATGAG 444
Query 358 ATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTGCGGGCCCTGGTGGGCTGGAGCTCTGG 431
||.|||||||||||||||||||||||||||||||||||||.||||||.||.||||||||||||||||.||||||
Sbjct 445 ATTGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAAGAAACTCCGTGCCCTGGTGGGCTGGAACTCTGG 518
Query 432 GGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGTAAATCTGGCCCGCTATCAGCGCTACC 505
|||.||..|||||||.||||||||||||||||||||||||||.||..|.||.||||||||||.|||||||||||
Sbjct 519 GGATGGGGTCTTCTGTCCTGGTGGCTCCATCTCCAACATGTACGCCATGAACCTGGCCCGCTTTCAGCGCTACC 592
Query 506 CGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTATTCACATCGAAGGAGTGTCACTACTCC 579
|.||.||||||||||||||||||||..|.|||||||||.||||.||.|||||.||.||||||||||||||||||
Sbjct 593 CAGACTGCAAGCAGAGGGGCCTCCGGGCCCTGCCGCCCTTGGCTCTCTTCACTTCAAAGGAGTGTCACTACTCC 666
Query 580 ATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAA 653
|||...|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 667 ATCACCAAGGGAGCTGCTTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAG 740
Query 654 AATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGGTGCTGTGCCGTTCCTGGTCAGTG 727
.|||.||||.|||||.||||||||||||||...|.||||.|||||||||||..|||||||.||.||||||||||
Sbjct 741 GATGATCCCTGAGGACCTGGAGAGGCAGATCATTCTGGCAGAGGCTGAGGGCTCTGTGCCATTTCTGGTCAGTG 814
Query 728 CCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGTCATGGG 801
||||||||||.|||||.||||||||||||||||||||||||||.||||||||.|||||.||||||||.||.||.
Sbjct 815 CCACCTCTGGTACCACCGTGCTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGATGTTTGCCAGCGACACGGA 888
Query 802 CTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTCCTGCTGTCACAGACACACAGGCATCTCCTGGATGG 875
||.|||.|.|||||||||
Sbjct 889 CTGTGGTTCCATGTGGAT-------------------------------------------------------- 906
Query 876 GATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTC 949
|||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||.||.||||
Sbjct 907 ---------GGCTGACTCTGTGGCCTGGAACCCTCACAAGCTTCTCGCCGCAGGGCTGCAGTGCTCCGCTCTTC 971
Query 950 TTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAG 1023
||||||.|||.|||||||||||||||||||||||||||||.|||||||||||||||||.||||||||.||||||
Sbjct 972 TTCTCCGGGACACCTCGAACCTGCTCAAGCGCTGCCATGGATCCCAGGCCAGCTACCTCTTCCAGCAAGACAAG 1045
Query 1024 TTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTG 1097
|||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1046 TTCTACGATGTGGCTCTGGACACCGGAGACAAAGTGGTGCAGTGTGGCCGCCGCGTGGACTGTCTGAAGCTATG 1119
Query 1098 GCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCCGGTACC 1171
|||||||||||||||||||||.|..||.|||.|||||||||||||||||||||||||||..||..||||||||.
Sbjct 1120 GCTCATGTGGAAGGCACAGGGTGGGCAGGGGTTGGAGCGGCGCATCGACCAGGCCTTTGCTCTCACCCGGTACT 1193
Query 1172 TGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTGG 1245
||||||||||.||.||.|||||||||||.||||||.|.||.||||
Sbjct 1194 TGGTGGAGGAGATTAAAAAGCGGGAAGGATTTGAGTTGGTAATGG----------------------------- 1238
Query 1246 TTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCGT 1319
||||||||||.||
Sbjct 1239 -------------------------------------------------------------AGGTGGCCCCTGT 1251
Query 1320 GCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTCT 1393
||||||||||||||||||||||.||||..|||||||||||||||||||||||||.||||||||||.||||||||
Sbjct 1252 GCTCAAGGAGCGCATGGTGAAGAAGGGGACCATGATGATTGGCTACCAGCCCCATGGGACCCGGGCCAACTTCT 1325
Query 1394 TCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCTA 1467
||||..||||.|||||||||.|...||||.||...||.|||||.||.|||||.||...|||||||||||..||.
Sbjct 1326 TCCGAATGGTGGTGGCCAACCCCATACTGGCCCAGGCCGATATAGATTTCCTTCTGGGCGAGCTGGAGCTCCTG 1399
Query 1468 GGCCAGGACCTG-------------------------------------------------------------- 1479
||||||||||||
Sbjct 1400 GGCCAGGACCTGTGAGCTGCTTCTGCTCTCTGCCCCACCCAAGCTCTGCGTAGTCTCCTGGGTTCTCAAAATCG 1473
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1474 ACCTTTCTAGGAAACAGTGGCCTTGACTGTGTGTGCTCCCACACACTCACTCTCCCAGCTAAGTATTGGCTGTC 1547
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1548 AGGAAGGTGTCTAAACACACTACAGTATGTTCTTACGAAATATGCTTTTATTAAGTTGGGCACAGGGGCACACA 1621
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1622 CCTTTACTACCAGCATTGGGGGGACAGAAGCAGCCAGTTTGAGGCCAGCCTGGACTACAGAGCTGGGCTACACA 1695
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1696 GAGAAACTGTCTCAAAAAGAAAAAAAGAAAAGAAAAAAAGAAATATTTTTCATTAAAATTATGTTTATAAAGAA 1769
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1770 TTTTTATTAATATGAGAGAAATGGTACAATGTATTGAAAAGCTGGATATGAGTTTATGAATCACAGTATCTGAG 1843
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1844 TTAGGCTAAAAATCACATAGGAAAAGGCTGTCGGTGGAACTGTGCCAAAGGTCAGCAGTTTTCCCTGGAACGGG 1917
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1918 ATATTAGGTTATTCCCAAATCAACCTCTCAGACCTTTTGTGCTTCCCCATTTTATTGTGTAACAACATCACATA 1991
Query 1480 --------------------------------------- 1479
Sbjct 1992 CTTCTGAAATAGGACAATAAAGCTGCGGTTTCCATTATA 2030
