Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11985
- Subject:
- NM_001278685.2
- Aligned Length:
- 2337
- Identities:
- 1392
- Gaps:
- 945
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGGACACTGGAAGACTCCTCGGGGACAGTCCTGCACCGCCTCATCCAGGAGCAGCTGCGCTACGGCAACCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACTGAGACGCGCACGCTGCTAGCCATCCAGCAGCAGGCCCTGAGGGGTGGGGCTGGAACTGGGGGTACAGGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCCCCAGGCCTCCCTGGAGATCCTGGCCCCAGAGGACAGTCAGGTGCTGCAGCAGGCCACCAGGCAGGAGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGGGCCAGGAGCACCAGGGCGGTGAGAACCACCTGGCAGAGAACACCCTCTACCGGCTATGCCCACAGCCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAGGGAGAGGAGCTGCCCACCTATGAGGAGGCCAAAGCCCACTCGCAGTACTATGCGGCCCAGCAGGCAGGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCGGCCACATGCGGGGGACCGAGATCCCCGTGGGGCCCCGGGAGGCAGTCGGAGGCAGGACGAGGCCCTGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGCTGAGGCATGGGCACGTGCGCTCGTTGAGTGAACGGCTCCTTCAGTTGTCCCTGGAGAGGAACGGCGCCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCCCCCAGCCACATGAGCTCCTCCCACAGCTTCCCACAGCTGGCCCGCAACCAGCAGGGCCCCCCACTGAGGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCCCCCTGCTGAGGGCCCAGAGTCCCGAGGACCCCCACCTCAGTACCCTCATGTTGTACTAGCTCATGAGACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCACTGCTGTCACTGACCCACGGTACCGTGCCCGCGGCAGCCCGCACTTCCAGCATGCTGAAGTCAGGATCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAGGCCCAGGTGCCTCCTGTGTTCCTCCAACAGCAGCAGCAGTACCAGTACCTGCAGCAATCTCAGGAGCACC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCCCTCCCCCACATCCAGCTGCTCTCGGCCATGGCCCCCTGAGCTCCCTCAGTCCACCTGCTGTGGAGGGGCCA 888
Query 1 ---------------------------------------------------ATGGAGGCCGTGCTGAGGGAGAA 23
|||||||||||||||||||||||
Sbjct 889 GTGAGTGCCCAGGCCTCCTCAGCCACCTCGGGCAGTGCCCACCTGGCCCAGATGGAGGCCGTGCTGAGGGAGAA 962
Query 24 TGCCAGGCTGCAGAGAGACAATGAGCGGCTGCAGAGGGAGCTGGAGAGCTCTGCGGAGAAGGCTGGCCGCATTG 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCCAGGCTGCAGAGAGACAATGAGCGGCTGCAGAGGGAGCTGGAGAGCTCTGCGGAGAAGGCTGGCCGCATTG 1036
Query 98 AGAAGCTGGAAAGCGAAATCCAGCGGCTCTCTGAGGCCCATGAGAGCCTGACCAGAGCCTCCTCCAAGCGTGAG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGAAGCTGGAAAGCGAAATCCAGCGGCTCTCTGAGGCCCATGAGAGCCTGACCAGAGCCTCCTCCAAGCGTGAG 1110
Query 172 GCCCTGGAGAAGACCATGCGGAACAAGATGGACAGTGAAATGAGGAGGCTGCAAGACTTCAACCGGGATCTTAG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCCCTGGAGAAGACCATGCGGAACAAGATGGACAGTGAAATGAGGAGGCTGCAAGACTTCAACCGGGATCTTAG 1184
Query 246 AGAGAGATTGGAATCTGCAAATCGCCGCCTGGCAAGCAAGACACAGGAGGCCCAGGCCGGCAGTCAGGACATGG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGAGAGATTGGAATCTGCAAATCGCCGCCTGGCAAGCAAGACACAGGAGGCCCAGGCCGGCAGTCAGGACATGG 1258
Query 320 TGGCCAAGCTGCTTGCTCAGAGCTACGAACAGCAGCAGGAGCAAGAGAAGCTGGAGCGAGAGATGGCACTGCTG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGCCAAGCTGCTTGCTCAGAGCTACGAACAGCAGCAGGAGCAAGAGAAGCTGGAGCGAGAGATGGCACTGCTG 1332
Query 394 CGCGGCGCCATCGAGGACCAGCGGCGGCGTGCCGAGCTGCTGGAGCAGGCTCTGGGCAATGCGCAGGGCCGGGC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CGCGGCGCCATCGAGGACCAGCGGCGGCGTGCCGAGCTGCTGGAGCAGGCTCTGGGCAATGCGCAGGGCCGGGC 1406
Query 468 AGCTCGAGCCGAAGAGGAGCTGCGCAAGAAGCAGGCCTATGTGGAGAAAGTGGAGCGGCTGCAGCAGGCGCTCG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGCTCGAGCCGAAGAGGAGCTGCGCAAGAAGCAGGCCTATGTGGAGAAAGTGGAGCGGCTGCAGCAGGCGCTCG 1480
Query 542 GGCAGCTGCAGGCAGCCTGTGAGAAGCGGGAGCAGCTGGAGCTGCGTCTGCGGACTCGCCTGGAGCAGGAACTC 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGCAGCTGCAGGCAGCCTGTGAGAAGCGGGAGCAGCTGGAGCTGCGTCTGCGGACTCGCCTGGAGCAGGAACTC 1554
Query 616 AAGGCCCTGCGTGCACAGCAGAGACAGGCAGGTGCCCCAGGTGGTAGCAGTGGCAGTGGTGGGTCTCCAGAGCT 689
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGGCCCTGCGTGCACAG------CAGGCAGGTGCCCCAGGTGGTAGCAGTGGCAGTGGTGGGTCTCCAGAGCT 1622
Query 690 CAGCGCCCTGCGACTGTCAGAACAACTGCGAGAGAAGGAGGAGCAGATCCTGGCGCTGGAGGCCGACATGACCA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CAGCGCCCTGCGACTGTCAGAACAACTGCGAGAGAAGGAGGAGCAGATCCTGGCGCTGGAGGCCGACATGACCA 1696
Query 764 AGTGGGAGCAGAAGTATTTGGAGGAACGTGCCATGAGGCAGTTTGCCATGGATGCGGCTGCCACGGCTGCTGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 AGTGGGAGCAGAAGTATTTGGAGGAACGTGCCATGAGGCAGTTTGCCATGGATGCGGCTGCCACGGCTGCTGCT 1770
Query 838 CAGCGTGACACCACTCTCATCCGACATTCCCCCCAGCCCTCACCCAGCAGCAGCTTCAATGAGGGTCTGCTCAC 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CAGCGTGACACCACTCTCATCCGACATTCCCCCCAGCCCTCACCCAGCAGCAGCTTCAATGAGGGTCTGCTCAC 1844
Query 912 TGGTGGCCACAGGCATCAGGAGATGGAAAGCAGGTTAAAGGTGCTCCATGCCCAGATCCTGGAGAAGGATGCAG 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TGGTGGCCACAGGCATCAGGAGATGGAAAGCAGGTTAAAGGTGCTCCATGCCCAGATCCTGGAGAAGGATGCAG 1918
Query 986 TGATCAAGGTCCTTCAGCAGCGCTCCAGGAGAGACCCTGGCAAGGCCATCCAGGGCTCCCTGCGGCCTGCCAAG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TGATCAAGGTCCTTCAGCAGCGCTCCAGGAGAGACCCTGGCAAGGCCATCCAGGGCTCCCTGCGGCCTGCCAAG 1992
Query 1060 TCGGTGCCATCTGTTTTCGCGGCTGCGGCAGCAGGAACCCAGGGCTGGCAAGGGCTCTCTTCTAGTGAGCGACA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 TCGGTGCCATCTGTTTTCGCGGCTGCGGCAGCAGGAACCCAGGGCTGGCAAGGGCTCTCTTCTAGTGAGCGACA 2066
Query 1134 AACAGCAGACGCCCCTGCTCGGCTGACTACAGACAGAGCACCCACAGAGGAGCCAGTGGTCACAGCTCCCCCTG 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 AACAGCAGACGCCCCTGCTCGGCTGACTACAGACAGAGCACCCACAGAGGAGCCAGTGGTCACAGCTCCCCCTG 2140
Query 1208 CTGCCCATGCCAAACACGGGAGCAGAGATGGGAGCACCCAGACTGAGGGCCCCCCAGACAGCACCTCCACCTGC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 CTGCCCATGCCAAACACGGGAGCAGAGATGGGAGCACCCAGACTGAGGGCCCCCCAGACAGCACCTCCACCTGC 2214
Query 1282 CTGCCACCGGAGCCTGACAGCCTTCTGGGGTGCAGCAGTAGCCAGAGAGCAGCCTCTCTGGACTCTGTAGCTAC 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CTGCCACCGGAGCCTGACAGCCTTCTGGGGTGCAGCAGTAGCCAGAGAGCAGCCTCTCTGGACTCTGTAGCTAC 2288
Query 1356 ATCCAGAGTCCAGGACTTGTCAGACATGGTGGAGATACTGATC 1398
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 ATCCAGAGTCCAGGACTTGTCAGACATGGTGGAGATACTGATC 2331
