Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12046
- Subject:
- XR_001781875.1
- Aligned Length:
- 5759
- Identities:
- 1282
- Gaps:
- 4317
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTTGTGGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCGGGGTCGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGAGTGCATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCAGCTTGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCAGTATAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATATGAGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAAGTGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTCTGGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAAGGATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGCACCTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAGCTGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCCTTAGTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGTGAGAGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATGAGTTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTTCAAAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTACTAGAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATC 1184
Query 1 -----------------------------ATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCA 45
|||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1185 CATCTGATGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCA 1258
Query 46 CCTACAGAGCCGCTGCCCGACGGGTGGATCATGACATTCCATAACTCTGGAGTCCCGGTGTACCTACACAGAGA 119
|||||||||||..||||.||.||.|||||||||||.||.|||||.|||||||||||.||.|||||.||||||||
Sbjct 1259 CCTACAGAGCCATTGCCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGA 1332
Query 120 GTCTCGGGTGGTCACCTGGTCCAGGCCATACTTCTTGGGAACGGGAAGCATACGGAAACACGACCCTCCTCTGA 193
||||||.||||||||.||||||||.||.||||||||||||||.|||||||||||||||||.||.||||||||.|
Sbjct 1333 GTCTCGAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAA 1406
Query 194 GTAGCATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCT 267
|.||.|||||.||.||.|||||||||||||||||||||||.||||||||.||.||||.|.||||.||..||||.
Sbjct 1407 GCAGTATCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCC 1480
Query 268 AGTGGGGATGTGTCCCCCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCC-CTGGATGAGCCTGACT 340
|||||.||.|||||.||.|||||||||.||.|.||.|||||||||.|||| |||||| |||||.||||||||||
Sbjct 1481 AGTGGAGAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGA-TTTCCCTCTGGAAGAGCCTGACT 1553
Query 341 CTATGGGTGCTGACCCGGGGCCCCCGGACGAGAAAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGG 414
|.|||||||..|||.|.|||.||..|||.|||||.||||||.|.|||||||||||||||.||||.||||||||.
Sbjct 1554 CCATGGGTGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGA 1627
Query 415 CAGGTGAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCGAGGAATTTCGAAGCTACCTGGAGAA 488
||.||||||||.|||||.||||||||||||||||||||.||||||||.|||||||||||.|..|||||.|||||
Sbjct 1628 CAAGTGAAGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAA 1701
Query 489 GCGTTTTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCAATCGGGAAA 562
|||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||.||.||.|
Sbjct 1702 GCGTTTTGACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGA 1775
Query 563 TGAAGCGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAA 636
||||||||||||||||.|||||.||||||||||||.||||||||||.||||||||.||.|||.||||.||.|||
Sbjct 1776 TGAAGCGGAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAA 1849
Query 637 GATGCACCCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACAT 710
||||||||||||||||||||||||||.||.||.|||||.|||||.||.|||||.||||||||||||||.|||||
Sbjct 1850 GATGCACCCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACAT 1923
Query 711 GCAGCGTGTCCTCAAGGTCCGCCCTGTCTATAATTTCTTTGAATGTGAGAACCCAAGTGAGCCTTTTGGTGCCT 784
|||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1924 GCAGCGTGTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCT 1997
Query 785 CGGTGACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCC 858
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 CCGTGACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCC 2071
Query 859 CGAGCTACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAGACAGTGAAGA 932
|||||.||.||||||||.||||||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct 2072 CGAGCCACCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGA 2145
Query 933 ACTCGAG---------------------------------------------------------------TATT 943
|||.||| ||||
Sbjct 2146 ACTGGAGATTCTCTTCTGCTTTCAAGAAGCTCTGTTTGGCCTTCAGTTGGATGAGTCTACAAACAGATGCTATT 2219
Query 944 TTAACCACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCATATCAG 1017
|||||||||||||.||.|||||.||.||.|||||.||||||||.||||||||||||||||||||||||||||||
Sbjct 2220 TTAACCACATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCATATCAG 2293
Query 1018 ATCCTCCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAA 1091
||||||||.|||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||||
Sbjct 2294 ATCCTCCATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCCTGGGAA 2367
Query 1092 AAACCAGAAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTG 1165
||||||||||||||||||.||.|||||.||.|||||.||||||||||||||||||||||||||.||..||||||
Sbjct 2368 AAACCAGAAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAACGAGTTG 2441
Query 1166 GAAAGCAGTTAGCCTCACAGAAGATCCTTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGC 1239
|.||.||.|||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||.|||||.|||
Sbjct 2442 GGAAACAATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTACTACGC 2515
Query 1240 ATGTATGGCCGTGAGAGCAGCAAGATGGTCAAGCAGG-----AG------ACATC----GGACAAGAGT----- 1293
||||||||.||||||||||||||.||||||||||||| || ||||| || .|||
Sbjct 2516 ATGTATGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGG----CAGTTGCTC 2585
Query 1294 -------GTGATTGAGCT---------------------------------GCAGCAGTA-------------- 1313
.||.||..||| ||||||.||
Sbjct 2586 TGCTTCCCTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATGAC 2659
Query 1314 ---------------------TGCCA-AGAAG---------AA--CAAG----------CCCAACCTGCACA-- 1342
|||.| .|||| || |||| |||||.| ||||
Sbjct 2660 TGTCTCTGCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGC--CACATT 2731
Query 1343 -TCCTCAGCAAGCT-CCAAGAGGAGATGAAGAGGCTAGCTGAG---GAA-----AGGGAG------GAGACT-- 1398
||||||..||.|| || |||| ||.|.|| ||| |||||| .|||||
Sbjct 2732 TTCCTCATGAATCTGCC--------------AGGC-AGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTAT 2790
Query 1399 ------CGAAAGAAGCC---CA--AGATG------------------------TCCATTGT-----GGCGTCCG 1432
.||.|.||.|| || ||||| |..||||| |||.| |
Sbjct 2791 CAGGCCTGACACAAACCAGACAGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTT--G 2862
Query 1433 C---CCAGCC---TGGCGGTGAGCC------------CCT-------------GTGCACCGTGGACGTG----- 1470
| |||||| ||||.|| || ||| ||.|.|.|| |||.|.
Sbjct 2863 CAAACCAGCCCTTTGGCAGT---CCTCAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGT-GACTTAAAGAA 2932
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 2933 TATGGGTATTATCTGTTTTGTTTCTGAGGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGG 3006
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3007 TATGGGAAGTAATGGGAAATTATGTTGGGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTC 3080
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3081 CCCTAATATATGCCGAAACTACCTGGATCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAG 3154
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3155 TCTGTGCTCTGGACCCTTGAGCTACCCTGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAG 3228
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3229 ATTCTCCAAGACTCAAACTTGTCCCTGTCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAA 3302
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3303 ATAATATAAGAGTACTTCTTTTTTCTGATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACA 3376
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3377 GGCCAAACAAGGACTGAGTTGCATCTTCAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTG 3450
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3451 TAGGTACGTAGTCTGGGACTGAGACAGAGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGA 3524
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3525 GTGAATGGCCCTTGTCTGGCACAGGAGTTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAG 3598
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3599 CCAAGAAGGGAAGAGAACCAAAGAGAACAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAG 3672
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3673 CCACTGTCAGAGGGTTCCTGGCATAGTGAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGAT 3746
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3747 CATGGAGGAAGGAAGGAACTGTCTGGGAGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCA 3820
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3821 GCTGCAAATGCTTTATCACAGGTAGGCCACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTG 3894
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3895 GGTGGATACTGCTACTTGAGCATACTGCTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCT 3968
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 3969 GACAAGAGTGTGATAGAGCTACAGCAGTATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACA 4042
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4043 AGAAGAGATGAAGAGGCTGGCTGCAGAGCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTG 4116
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4117 CCCAGCCTGGTGGTGAGCCCTTGTGCACAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGG 4190
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4191 AGAGACCATCAGCCACACATCATCACTCTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTC 4264
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4265 TGGGCTCTGGCTCTGGCACATGGGGACAGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGC 4338
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4339 TGCTCTCAATGTGACTGGATATACTTAAGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCT 4412
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4413 GTAGATCCTGCTTGTATGTATCTGCTGCGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGC 4486
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4487 ACTGACAAGAAGTAATACTTCGTTGATAGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAG 4560
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4561 GTAGCCCCTTTGCTATGGTTCTTTCTGGTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGT 4634
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4635 AGAATTACCTGCTTTGTGTGTTTTGCATTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTT 4708
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4709 TGGCTTAAAATAAAACAAAATTTTAGCACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGT 4782
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4783 CCGATTGATCCTTTTTCTTATGAAGTCTTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCG 4856
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4857 ATAAACTTAGCAACAATTTTTTACAGAGATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTT 4930
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 4931 TATGATGTTTTAAAATTTGGAAAGAAACTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCAT 5004
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5005 AAATAGGGAACTGGCCTTCAATGTAGCCCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGT 5078
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5079 TATGGTGTTTTTTGATCTCAAGGATAGCTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGC 5152
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5153 TCATTGGATAGCCCCTGTAAATGGGTATTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTA 5226
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5227 CACTCTACATCCTCAGTGTCTCTAACCATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGA 5300
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5301 TGGCAACTGTGGGCCTCCCAACAGCATCTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTT 5374
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5375 AATCTTGGCAAAAAGAACCCTTAATTCAAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGT 5448
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5449 TGTGTTCAGTCTTTTGACTAACCATTGCCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTA 5522
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5523 TCTCTGCAGCCTCACCGACCCAGGCACTGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTG 5596
Query 1471 -------------------------------------------------------------------------- 1470
Sbjct 5597 TCTCTTACAGGTGGGTCTTATATGTACAGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTG 5670
Query 1471 ------------------------------------------------------------- 1470
Sbjct 5671 TTGGCCAAGGCTGTAGGGTGTACCCTGATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5731
