Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12096
Subject:
NR_160929.1
Aligned Length:
1850
Identities:
426
Gaps:
1392

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGGTGTTGGTGCTAGCGCGGCTTCCCGGCGCTCGTGGAATCTTCTGGAGCCCTTTTCTCCACTCAGCGAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAGAGTGCGGAAGTCTCCGGCTGGTGGGGCATGGCCCAGGAGCACTAGTGATGATGCGGGTGTGCTGGTTGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGACAGGACAGCCGGCACCAGCGAATCAGACTTCCACATTTGGAAGCAGTTGTGATTGGGCGTGGCCCAGAGA  222

Query    1  -------------------ATG--CAGGACCCCAA----AATGCAG-GTTTACAAAG----ATG---------A  35
                               |||  |..|||..|||    ||.|||| ||.||..|||    |||         |
Sbjct  223  CCAAGATCACTGATAAGAAATGTTCTCGACAGCAAGTTGAAAGCAGAGTGTAACAAGGGATATGTCAAGGTAAA  296

Query   36  GCAGGTGGTGGTGATAAAGGA-TAAATACCCAAAGGCCCGTTACCATTGGCT-GGTCTTACCGTGGACCTCCAT  107
            ||||||           |||| |.||| ||||    ||    |.|||||.|| .|||.||            ||
Sbjct  297  GCAGGT-----------AGGAGTCAAT-CCCA----CC----AGCATTGACTCAGTCGTA------------AT  338

Query  108  T-------TCCA----GTCTGAAGGCTG-----TGGCCAGG-------------GAACACCTTGAACTCCTTAA  152
            |       .|||    |  |||| ||||     ||||||||             |||     ||||||  |||.
Sbjct  339  TGGGAAGGACCAAGAGG--TGAA-GCTGCAGCCTGGCCAGGTTCTCCACATGGTGAA-----TGAACT--TTAT  402

Query  153  GCATAT--------------------------GCACACTG---TGG--------GGGAAAAG------------  177
            .|||||                          |.||.|||   |||        .||||.||            
Sbjct  403  CCATATATTGTAGAGTTTGAGGAAGAGGCAAAGAACCCTGGCCTGGAAACACACAGGAAGAGAAAGAGATCAGG  476

Query  178  -----GTGATTGTA--------GATTTT---------------GCTGGGTC---------------CAGCAAAC  208
                 ||||||.||        |||..|               ||||||.|               .||| |||
Sbjct  477  CAACAGTGATTCTATAGAAAGGGATGCTGCTCAGGAAGCTGAGGCTGGGACAGGGCTGGAACCTGGGAGC-AAC  549

Query  209  TC-----------CGCTTCC----------------GAT----------------------TGGGCTAC-----  228
            ||           |..|.||                |||                      |||||.||     
Sbjct  550  TCTGGCCAATGCTCTGTGCCCCTAAAGAAGGGAAAAGATGCACCTATCAAAAAGGAATCCCTGGGCCACTGGAG  623

Query  229  -CACGCC------ATTCCGAGTATG----------------AGCCATGTACATCTTCATGTGATCAGCCAGGAT  279
             ||.|.|      |||.|   ||||                |||||||||||||||||||||||||||||||||
Sbjct  624  TCAAGGCTTGAAGATTTC---TATGCAGGACCCCAAAATGCAGCCATGTACATCTTCATGTGATCAGCCAGGAT  694

Query  280  TTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAATTCTTTCAATACAGAATACTTCCTAGAATCACAAGC  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  695  TTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAATTCTTTCAATACAGAATACTTCCTAGAATCACAAGC  768

Query  354  TGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCC  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  769  TGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCC  842

Query  428  TTCGTTGTCATGAGTGCCAGCAGCTGCTGCCTTCCATTCCTCAGCTGAAAGAACATCTCAGGAAGCACTGGACA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  843  TTCGTTGTCATGAGTGCCAGCAGCTGCTGCCTTCCATTCCTCAGCTGAAAGAACATCTCAGGAAGCACTGGACA  916

Query  502  CAG-----------------------------------------------------------------------  504
            |||                                                                       
Sbjct  917  CAGTGATTCTGCAGAGCCTGAGCTGCTGCTGTGGTGTGGCCCACTGGAGCAAACTGCTGGCACCTATTCTGGGT  990

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  991  TGCTTGTGAACTTCTACTCATTTCCTAAATTAAAACATGCAGCTTTTTCACAAATTTATTCTATTATTGAGTGG  1064

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1065  CCACAATGTAGAGTGGCTCAAAGTACTTCAGGATTAGGAATTTGGGTTTGTCATAGATGTATTCTCTGGTGAGG  1138

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1139  GTGGCTGGGATATACCTGACCCACCATCTTCAGAAGGACCCATGTCAGGTCTGACCATTGGGAGCAAAGCCATG  1212

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1213  TTCACACTGACCTAATGCAGAGTATGGAAGCATTGGGCTGGTTATACATTTCTGTTTCTTAGATTTATCCTCCG  1286

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1287  CCTCTGTAGGCATGGACAACCTTTAATCAGAGCATCTAGAGTGGCCTCTTGTTTATCCTGAAGATACTGATGGG  1360

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1361  TCTTGTTTTCTGTTAGTCTGTTTTGTAATATTCTTTTCCCTTCCTTCATGGGGAGGCTTAGTTTGTCCAGTCCT  1434

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1435  TCCATGCCCTTCTATCCCAGATTACCTAAATGTTCCCTTCTCAGGAATTCTGTCTCATCAGTTCTTCACAGTGA  1508

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1509  GAAAAGAGGCTAGATGATGGTGTGGGGGGTTGGAGTTTTCTTCTAATACCGAGGGTTCCTGGCTGTGAGGAAAC  1582

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1583  AGCCACATGTTCGTCATGATTGAGCTGTGAAGTCTTCTTGGACCTGTTGTCTGAAAATAAAGTTAATTTGTTTG  1656

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1657  AGGCATCTCTCTTAAGTAGGTGGAAACTATTGAAGTTCAGCTAACAATCACAGCATAGGTTCTGATGCATGGAA  1730

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1731  AGGTGGTTGGTGAATGAAAAAGTTGCGTAGAGCCACTACTTTCTTTTTCCCTGAGAATAAATTTGGATAAAACA  1804

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.