Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12139
- Subject:
- XM_005248729.5
- Aligned Length:
- 5460
- Identities:
- 2119
- Gaps:
- 3339
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCTTGTGAGAGGAAAGGCCTCTCGGAGCTGCGATCGGAGCTCTACTTCCTCATCGCCCGGTTCCTGGAAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGACCCTGTCAGCAGGCGGCTCAGGTGCTGATCCGCGAGGTGGCCGAGAAGGAGCTGCTGCCCCGGCGCACCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACTGGACCGGGAAGGAGCATCCCAGGACCTACCAGAATCTGGTGAAGTATTACAGACACTTAGCACCTGATCAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGCTGCAAATATGTCATCGACTAGGACCTCTTCTTGAACAAGAAATTCCTCAAAGTGTTCCTGGAGTACAAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTATTAGGAGCTGGAAGACAGTCTTTACTACGCACAAATAAAAGCTGCAAGCATGTTGTGTGGAAAGGATCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCTGGCTGCGTTGCACTGTGGAAGACCACCTGAGTCACCAGTTAACTATGGTAGCCCACCCAGCATTGCGGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACTCTGTTTTCAAGGAAGCTGAATGGGAAATACAGACTTGAGCGACTTGTTCCAACTGCAGTGTATCAGCACAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAAATGCATAAACGAATTCTTGGACACTTGTCATCTGTGTACTGTGTAACTTTTGATCGAACTGGCAGACGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TATTTACTGGTTCTGATGACTGTCTTGTGAAAATATGGGCAACAGATGATGGGAGGTTGTTAGCTACCTTAAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGACATGCTGCTGAAATATCAGACATGGCTGTAAACTATGAGAATACCATGATAGCAGCTGGAAGTTGTGATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATGATCCGAGTCTGGTGTCTTCGAACCTGTGCACCTTTGGCTGTTCTTCAGGGCCATAGTGCATCTATTACAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTACAGTTCTCACCATTGTGCAGTGGCTCAAAGAGATATCTATCTTCTACTGGGGCAGATGGCACTATTTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTTGGCTCTGGGATGCTGGAACCCTTAAAATAAACCCAAGACCTGCAAAATTTACAGAGCGCCCTCGGCCTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTTCAAATGATCTGTTCTTCTTTTAGTGCTGGTGGAATGTTTCTGGCGACGGGAAGCACAGATCATATTATTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGTTTATTTTTTTGGATCAGGTCAGCCAGAGAAAATATCAGAATTGGAGTTTCATACTGACAAAGTTGACAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATCCAGTTTTCCAACACTAGTAACAGGTTTGTAAGTGGCAGTCGTGATGGGACAGCACGTATTTGGCAATTTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACGAAGAGAGTGGAAGAGCATTTTGTTGGATATGGCTACTCGTCCAGCAGGCCAAAACCTTCAAGGAATAGAAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAAAATCACAAAAATGAAGGTTACTATGGTAGCTTGGGATCGACATGACAATACAGTTATAACTGCAGTTAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AACATGACTCTGAAAGTTTGGAATTCTTACACTGGTCAACTAATTCATGTCCTGATGGGTCATGAAGATGAGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATTTGTTCTTGAACCACACCCGTTCGATCCTAGAGTTCTCTTTTCTGCTGGTCATGATGGAAACGTGATAGTGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGATCTGGCAAGAGGAGTCAAAATACGATCTTATTTCAATATGATTGAAGGCCAAGGACATGGCGCAGTATTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GACTGCAAATGCTCTCCTGATGGTCAGCATTTTGCATGCACAGACTCTCATGGACATCTTTTAATTTTTGGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGGTCCAGTAGCAAATATGACAAGATAGCAGATCAGATGTTCTTTCATAGTGATTATCGGCCACTTATTCGTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATGCCAACAATTTTGTATTAGATGAACAGACTCAGCAAGCACCTCATCTTATGCCTCCCCCTTTTTTGGTTGAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTGATGGTAACCCTCATCCATCAAGATATCAAAGATTAGTTCCTGGCCGTGAAAATTGCAGGGAGGAGCAACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CATCCCTCAGATGGGAGTAACTTCCTCAGGACTGAATCAAGTTTTAAGTCAGCAAGCAAACCAGGAGATCAGCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CACTGGACAGCATGATTCAAAGACTACAACAGGAGCAAGACCTGAGACGTTCTGGTGAAGCAGTTATCAGTAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCAGCCGTTTAAGTAGAGGCTCCATAAGTTCTACCTCAGAGGTTCATTCACCACCAAACGTAGGACTAAGACG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAGTGGACAAATTGAAGGTGTACGGCAAATGCACAGCAACGCACCAAGAAGTGAAATAGCCACAGAGCGGGATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGTAGCTTGGAGTCGAAGGGTGGTAGTACCCGAGCTATCAGCTGGTGTAGCCAGGCAAGAAGAATGGAGAACT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCAAAGGGAGAAGAAGAAATAAAGACTTACAGGTCAGAAGAGAAAAGAAAACACTTAACTGTTCCAAAAGAGAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAAATACCCACTGTCTCAAAGAATCATGCTCATGAGCATTTCCTGGATCTTGGAGAATCCAAAAAGCAACAGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAAATCAACACAATTATCGTACAAGATCTGCATTGGAAGAGACTCCTAGACCCTCAGAAGAGATAGAAAATGGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGTAGTTCTTCAGATGAAGGCGAAGTAGTTGCTGTCAGTGGTGGAACATCCGAAGAAGAAGAGAGAGCATGGCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAGTGATGGCAGTTCTAGTGACTACTCCAGTGATTACTCTGACTGGACAGCAGATGCAGGAATTAATCTGCAGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CACCAAAGAAAGTTCCTAAGAATAAAACCAAGAAAGCAGAAAGCAGTTCAGATGAAGAAGAAGAATCTGAAAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGAAGCAAAAACAGATTAAAAAGGAAAAGAAAAAAGTAAATGAAGAAAAAGATGGACCAATATCACCAAAGAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAGAAGCCCAAAGAAAGAAAACAAAAGAGATTGGCTGTGGGAGAACTAACTGAAAATGGTTTGACATTAGAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AATGGTTGCCATCAACATGGATTACAGATACCATTCCCCGAAGATGTCCATTTGTGCCACAGATGGGTGATGAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTTTATTATTTCCGACAAGGACATGAAGCCTATGTCGAAATGGCCCGGAAAAATAAAATATATAGTATCAATCC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAAAAAACAACCATGGCATAAAATGGAGCTACGGGAACAAGAACTTATGAAAATAGTTGGCATAAAGTATGAAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGGGATTACCTACCCTTTGCTGCCTTAAACTTGCTTTTCTAGATCCTGATACTGGTAAACTGACTGGCGGATCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTTACCATGAAATACCATGATATGCCTGACGTTATAGATTTCCTAGTCTTGAGACAACAATTTGATGATGCAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATACAGGCGATGGAATATAGGTGACCGCTTCAGGTCTGTCATAGATGATGCCTGGTGGTTTGGAACAATCGAAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCCAGGAACCTCTTCAACTTGAGTACCCTGATAGTCTGTTTCAATGCTACAATGTTTGCTGGGACAATGGAGAT 3330
Query 1 ---------ATGAGTCCTTGGGATATGGAGCTTATACCTAATAATGCTGTATTTCCTGAAGAACTAGGTACCAG 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 ACAGAAAAGATGAGTCCTTGGGATATGGAGCTTATACCTAATAATGCTGTATTTCCTGAAGAACTAGGTACCAG 3404
Query 66 TGTTCCTTTAACTGATGGTGAGTGCAGATCACTAATCTATAAACCTCTTGATGGAGAATGGGGTACCAATCCCA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGTTCCTTTAACTGATGGTGAGTGCAGATCACTAATCTATAAACCTCTTGATGGAGAATGGGGTACCAATCCCA 3478
Query 140 GGGATGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGATATTGCCTCAGCATTTGTG 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GGGATGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGATATTGCCTCAGCATTTGTG 3552
Query 214 GCCCCCGTGGATCTGCAAGCCTATCCCATGTATTGCACAGTAGTGGCATATCCAACGGATCTAAGTACAATTAA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 GCCCCCGTGGATCTGCAAGCCTATCCCATGTATTGCACAGTAGTGGCATATCCAACGGATCTAAGTACAATTAA 3626
Query 288 ACAAAGACTGGAAAACAGGTTTTACAGGCGGGTTTCTTCCCTAATGTGGGAAGTTCGATATATAGAGCATAATA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 ACAAAGACTGGAAAACAGGTTTTACAGGCGGGTTTCTTCCCTAATGTGGGAAGTTCGATATATAGAGCATAATA 3700
Query 362 CACGAACATTTAATGAGCCTGGAAGCCCTATTGTGAAATCTGCTAAATTCGTGACTGATCTTCTTCTACATTTT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 CACGAACATTTAATGAGCCTGGAAGCCCTATTGTGAAATCTGCTAAATTCGTGACTGATCTTCTTCTACATTTT 3774
Query 436 ATAAAGGATCAGACTTGTTATAACATAATTCCACTTTATAATTCAATGAAGAAGAAAGTTTTGTCTGATTCTGA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 ATAAAGGATCAGACTTGTTATAACATAATTCCACTTTATAATTCAATGAAGAAGAAAGTTTTGTCTGATTCTGA 3848
Query 510 GGATGAAGAGAAAGATGCTGATGTGCCAGGAACTTCTACTCGAAAAAGGAAGGACCATCAGCCTAGAAGAAGAT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GGATGAAGAGAAAGATGCTGATGTGCCAGGAACTTCTACTCGAAAAAGGAAGGACCATCAGCCTAGAAGAAGAT 3922
Query 584 TACGTAATAGAGCCCAGTCTTACGATATTCAAGCATGGAAGAAACAGTGTGAAGAATTGTTAAATCTCATATTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 TACGTAATAGAGCCCAGTCTTACGATATTCAAGCATGGAAGAAACAGTGTGAAGAATTGTTAAATCTCATATTT 3996
Query 658 CAATGTGAAGATTCAGAGCCTTTCCGTCAGCCGGTAGATCTCCTTGAATATCCAGACTACAGAGACATCATTGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CAATGTGAAGATTCAGAGCCTTTCCGTCAGCCGGTAGATCTCCTTGAATATCCAGACTACAGAGACATCATTGA 4070
Query 732 CACTCCAATGGATTTTGCTACCGTTAGAGAAACTTTAGAGGCTGGGAATTATGAGTCACCAATGGAGTTATGTA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 CACTCCAATGGATTTTGCTACCGTTAGAGAAACTTTAGAGGCTGGGAATTATGAGTCACCAATGGAGTTATGTA 4144
Query 806 AAGATGTCAGACTTATTTTCAGTAATTCCAAAGCATATACACCAAGCAAAAGATCAAGGATTTACAGCATGAGT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 AAGATGTCAGACTTATTTTCAGTAATTCCAAAGCATATACACCAAGCAAAAGATCAAGGATTTACAGCATGAGT 4218
Query 880 TTGCGCTTGTCTGCATTCTTTGAAGAACACATTAGTTCAGTTTTATCAGATTATAAATCTGCTCTTCGTTTTCA 953
||||||.|||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 TTGCGCCTGTCTGCTTTCTTTGAAGAACACATTAGTTCAGTTTTATCAGATTATAAATCTGCTCTTCGTTTTCA 4292
Query 954 TAAAAGAAATACCATAACCAAAAGGAGGAAGAAAAGAAACAGAAGCAGCTCTGTTTCCAGTAGTGCTGCATCAA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 TAAAAGAAATACCATAACCAAAAGGAGGAAGAAAAGAAACAGAAGCAGCTCTGTTTCCAGTAGTGCTGCATCAA 4366
Query 1028 GCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCAGCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTACACCT 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 GCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCAGCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTACACCT 4440
Query 1102 ACACGATCAATACCGCCAAGACACAATGCTGCTCAGATAAACGGTAAAACAGAATCTAGTTCTGTGGTTCGAAC 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 ACACGATCAATACCGCCAAGACACAATGCTGCTCAGATAAACGGTAAAACAGAATCTAGTTCTGTGGTTCGAAC 4514
Query 1176 CAGAAGCAACCGAGTGGTTGTAGATCCAGTTGTCACTGAGCAACCATCTACTTCTTCAGCTGCAAAGACTTTTA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 CAGAAGCAACCGAGTGGTTGTAGATCCAGTTGTCACTGAGCAACCATCTACTTCTTCAGCTGCAAAGACTTTTA 4588
Query 1250 TTACAAAAGCTAATGCATCTGCAATACCAGGGAAAACAATACTAGAGAATTCTGTGAAACATTCCAAAGCTTTG 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 TTACAAAAGCTAATGCATCTGCAATACCAGGGAAAACAATACTAGAGAATTCTGTGAAACATTCCAAAGCTTTG 4662
Query 1324 AATACTCTTTCCAGTCCTGGTCAATCCAGTTTTAGTCATGGCACTAGGAATAATTCTGCAAAAGAAAACATGGA 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663 AATACTCTTTCCAGTCCTGGTCAATCCAGTTTTAGTCATGGCACTAGGAATAATTCTGCAAAAGAAAACATGGA 4736
Query 1398 AAAGGAAAAGCCAGTCAAACGTAAAATGAAGTCATCTGTACTCCCAAAGGCGTCCACTCTTTCAAAGTCATCAG 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737 AAAGGAAAAGCCAGTCAAACGTAAAATGAAGTCATCTGTACTCCCAAAGGCGTCCACTCTTTCAAAGTCATCAG 4810
Query 1472 CTGTCATTGAGCAAGGAGATTGTAAGAACAACGCTCTTGTACCAGGAACCATTCAAGTAAATGGCCATGGAGGA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811 CTGTCATTGAGCAAGGAGATTGTAAGAACAACGCTCTTGTACCAGGAACCATTCAAGTAAATGGCCATGGAGGA 4884
Query 1546 CAGCCATCAAAACTTGTGAAGAGGGGACCTGGAAGGAAACCTAAAGTAGAAGTTAATACCAATAGTGGTGAAAT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885 CAGCCATCAAAACTTGTGAAGAGGGGACCTGGAAGGAAACCTAAAGTAGAAGTTAATACCAATAGTGGTGAAAT 4958
Query 1620 TATACACAAGAAAAGGGGTAGAAAGCCCAAAAAGCTACAGTATGCAAAGCCAGAAGATTTAGAGCAAAATAATG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4959 TATACACAAGAAAAGGGGTAGAAAGCCCAAAAAGCTACAGTATGCAAAGCCAGAAGATTTAGAGCAAAATAATG 5032
Query 1694 TGCATCCCATCAGAGATGAAGTACTTCCTTCTTCAACATGCAATTTTCTTTCTGAAACTAATAATGTAAAGGAA 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5033 TGCATCCCATCAGAGATGAAGTACTTCCTTCTTCAACATGCAATTTTCTTTCTGAAACTAATAATGTAAAGGAA 5106
Query 1768 GATTTGTTACAGAAAAAGAATCGTGGAGGTAGGAAGCCCAAAAGGAAGATGAAGACACAAAAATTAGATGCAGA 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5107 GATTTGTTACAGAAAAAGAATCGTGGAGGTAGGAAGCCCAAAAGGAAGATGAAGACACAAAAATTAGATGCAGA 5180
Query 1842 TCTCCTAGTCCCTGCAAGTGTCAAAGTGTTAAGGAGAAGTAACCGAAAAAAGATAGATGATCCTATAGATGAGG 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5181 TCTCCTAGTCCCTGCAAGTGTCAAAGTGTTAAGGAGAAGTAACCGAAAAAAGATAGATGATCCTATAGATGAGG 5254
Query 1916 AAGAAGAGTTTGAAGAACTCAAAGGCTCTGAACCCCACATGAGAACTAGAAATCAAGGTCGAAGGACAGCTTTC 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5255 AAGAAGAGTTTGAAGAACTCAAAGGCTCTGAACCCCACATGAGAACTAGAAATCAAGGTCGAAGGACAGCTTTC 5328
Query 1990 TATAATGAGGATGACTCTGAAGAGGAGCAAAGGCAGCTGTTGTTCGAAGACACCTCTTTAACTTTTGGAACTTC 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5329 TATAATGAGGATGACTCTGAAGAGGAGCAAAGGCAGCTGTTGTTCGAAGACACCTCTTTAACTTTTGGAACTTC 5402
Query 2064 TAGTAGAGGACGAGTCCGAAAGTTGACTGAAAAAGCAAAAGCTAATTTAATTGGTTGG 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5403 TAGTAGAGGACGAGTCCGAAAGTTGACTGAAAAAGCAAAAGCTAATTTAATTGGTTGG 5460
