Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12139
- Subject:
- XM_011242840.2
- Aligned Length:
- 3802
- Identities:
- 1874
- Gaps:
- 1685
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTTTTTTCACAGTGATTATCGGCCTCTTATCCGTGATGCGAACAATTTTGTATTAGATGAGCAGACGCAGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCACCTCACCTCATGCCTCCCCCTTTTCTGGTTGATGTTGATGGAAATCCTCATCCATCAAGGTACCAGCGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGTTCCTGGTCGGGAGAACTGCAGGGAGGAGCAGCTCATTCCTCAGATGGGAGTAACTTCTTCAGGATTGAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAAGTTTTGAGCCAGCAAGCAAACCAGGATATTAGTCCTTTAGACAGCATGATTCAAAGACTGCAGCAGGAGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGACCTGAGGCGTTCGGGTGAAGCAGGTGTTAGTAATGCCAGCCGTGTGAACAGAGGCTCAGTAAGTTCTACCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGAAGTTCATTCACCACCAAATATAGGATTAAGGCGCAGTGGCCAAATCGAAGGTGTACGGCAGATGCACAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATGCTCCGAGAAGTGAAATAGCCACAGAGCGAGATCTTGTTGCTTGGAGTCGGAGGGTAGTAGTGCCTGAGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTCGGCTGGTGTGGCTAGTAGACAAGAAGAATGGAGAACTGCAAAGGGAGAAGAGGAAATAAAGAGTTATAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGAAGAGAAAAGGAAACACTTAACTGTTGCAAAAGAGAATAAAATACTTACTGTCTCAAAGAATCATGCTCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGCATTTCCTGGATCTTGGGGATTCTAAAAAGCAGCAAGCGAATCAGCACAATTACCGTACAAGATCTGCACT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGAAGAAACACCCAGGCCCTTAGAGGAGCTAGAAAACGGAACTAGTTCTTCAGATGAAGGTGAAGTACTTGCTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCAGTGGTGGGACTTCTGAGGAAGAGGAGCGAGCATGGCACAGTGATGGCAGCTCCAGTGACTACTCCAGTGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATTCTGATTGGACAGCAGATGCTGGAATTAACTTGCAGCCACCAAAGAAAGTTCCTAAGCATAAAACCAAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACCAGAAAGTAGTTCAGATGAAGAAGAAGAATCTGAAAACCAGAAGCAAAAACATATTAAAAAGGAAAGAAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAGCAAATGAAGAAAAAGATGGACCAACATCACCAAAGAAAAAAAAGCCCAAAGAAAGAAAACAAAAGAGATTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTGTAGGAGAACTAACTGAGAATGGCCTAACGTTAGAAGAGTGGTTGCCTTCAGCTTGGATTACAGACACACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCCAGGAGATGTCCATTTGTGCCACAGATGGGTGATGAGGTTTATTATTTTCGACAAGGGCATGAAGCATATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTGAAATGGCCCGGAAAAATAAAATTTATAGTATCAATCCTAAAAAGCAGCCATGGCATAAGATGGAACTAAGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAACAAGAACTAATGAAAATTGTTGGTATAAAGTATGAAGTGGGGTTGCCTACCCTTTGCTGCCTTAAACTTGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTCTAGATCCTGATACTGGCAAACTGACCGGTGGATCATTTACCATGAAATACCATGATATGCCTGACGTCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAGATTTTCTAGTCTTGAGACAACAATTTGATGATGCAAAGTATAGACGATGGAATATAGGTGACCGCTTCAGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCTGTCATAGATGATGCCTGGTGGTTTGGAACAATTGAAAGTCAAGAGCCTCTTCAACCTGAGTACCCTGATAG 1628
Query 1 -------------------------------------------------ATGAGTCCTTGGGATATGGAGCTTA 25
||||||||||||||||||||..|.|
Sbjct 1629 TTTGTTTCAGTGTTATAATGTATGTTGGGACAATGGAGATACAGAAAAGATGAGTCCTTGGGATATGGAATTAA 1702
Query 26 TACCTAATAATGCTGTATTTCCTGAAGAACTAGGTACCAGTGTTCCTTTAACTGATGGTGAGTGCAGATCACTA 99
||||||||||||||||.|||||.||||||||.|||||||||||||||||||||||||.|||.||.||.||.|||
Sbjct 1703 TACCTAATAATGCTGTCTTTCCAGAAGAACTGGGTACCAGTGTTCCTTTAACTGATGTTGAATGTAGGTCGCTA 1776
Query 100 ATCTATAAACCTCTTGATGGAGAATGGGGTACCAATCCCAGGGATGAAGAATGTGAAAGAATTGTGGCAGGAAT 173
||.||||||||||||||||||||||||||..||||||||||||||||||||||||||||||||||.|.||||||
Sbjct 1777 ATTTATAAACCTCTTGATGGAGAATGGGGAGCCAATCCCAGGGATGAAGAATGTGAAAGAATTGTTGGAGGAAT 1850
Query 174 AAACCAGTTGATGACACTAGATATTGCCTCAGCATTTGTGGCCCCCGTGGATCTGCAAGCCTATCCCATGTATT 247
|||.|||.|||||||||||||||||||.||.||||||||.|||||.|||||.||.|||||.|||||||||||||
Sbjct 1851 AAATCAGCTGATGACACTAGATATTGCGTCTGCATTTGTTGCCCCTGTGGACCTTCAAGCTTATCCCATGTATT 1924
Query 248 GCACAGTAGTGGCATATCCAACGGATCTAAGTACAATTAAACAAAGACTGGAAAACAGGTTTTACAGGCGGGTT 321
||||.||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||..||
Sbjct 1925 GCACTGTGGTGGCCTATCCAACGGATCTAAGTACAATTAAACAAAGACTGGAGAACAGGTTTTACAGGCGCTTT 1998
Query 322 TCTTCCCTAATGTGGGAAGTTCGATATATAGAGCATAATACACGAACATTTAATGAGCCTGGAAGCCCTATTGT 395
||.||.||||||||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||.|||||
Sbjct 1999 TCATCACTAATGTGGGAAGTTCGATATATAGAACATAATACACGAACATTCAATGAGCCAGGAAGCCCAATTGT 2072
Query 396 GAAATCTGCTAAATTCGTGACTGATCTTCTTCTACATTTTATAAAGGATCAGACTTGTTATAACATAATTCCAC 469
|||||||||||||||.||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GAAATCTGCTAAATTTGTGACTGATCTTCTCCTGCATTTTATAAAGGATCAGACTTGTTATAACATAATTCCAC 2146
Query 470 TTTATAATTCAATGAAGAAGAAAGTTTTGTCTGATTCTGAGGATGAAGAGAAAGATGCTGATGTGCCAGGAACT 543
||||.||.||||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||.|||
Sbjct 2147 TTTACAACTCAATGAAGAAGAAAGTTTTGTCTGACTCTGAGGAAGAAGAGAAAGATGCTGATGTTCCAGGGACT 2220
Query 544 TCTACTCGAAAAAGGAAGGACCATCAGCCTAGAAGAAGATTACGTAATAGAGCCCAGTCTTACGATATTCAAGC 617
|||||..||||..|.|||||.|||||.|||||||||||.|||||.||.|||||.|||||||||||||||||.||
Sbjct 2221 TCTACCAGAAAGCGCAAGGATCATCAACCTAGAAGAAGGTTACGCAACAGAGCTCAGTCTTACGATATTCAGGC 2294
Query 618 ATGGAAGAAACAGTGTGAAGAATTGTTAAATCTCATATTTCAATGTGAAGATTCAGAGCCTTTCCGTCAGCCGG 691
||||||||||||.|||.|||||||..|.|||||||||||||||||||||||.|||||.|||||.||.|||||.|
Sbjct 2295 ATGGAAGAAACAATGTCAAGAATTACTGAATCTCATATTTCAATGTGAAGACTCAGAACCTTTTCGACAGCCAG 2368
Query 692 TAGATCTCCTTGAATATCCAGACTACAGAGACATCATTGACACTCCAATGGATTTTGCTACCGTTAGAGAAACT 765
|.|||||.||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||.|||
Sbjct 2369 TGGATCTTCTTGAATATCCAGACTACAGAGACATCATTGACACTCCAATGGACTTTGCCACTGTTAGAGAGACT 2442
Query 766 TTAGAGGCTGGGAATTATGAGTCACCAATGGAGTTATGTAAAGATGTCAGACTTATTTTCAGTAATTCCAAAGC 839
||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||||||||.|||||
Sbjct 2443 TTAGAGGCTGGGAATTATGAGTCACCCATGGAGTTATGTAAAGATGTCAGGCTCATTTTCAGTAATTCTAAAGC 2516
Query 840 ATATACACCAAGCAAAAGATCAAGGATTTACAGCATGAGTTTGCGCTTGTCTGCATTCTTTGAAGAACACATTA 913
|||.|||||||||||.||||||||||||||||||||||||||.|||.|||||||.||||||||||||||.||||
Sbjct 2517 ATACACACCAAGCAAGAGATCAAGGATTTACAGCATGAGTTTACGCCTGTCTGCTTTCTTTGAAGAACATATTA 2590
Query 914 GTTCAGTTTTATCAGATTATAAATCTGCTCTTCGTTTTCATAAAAGAAATACCATAACCAAAAGGAGGAAGAAA 987
||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||.|||.|.|||||||||.
Sbjct 2591 GTTCAGTTTTGTCAGATTATAAATCTGCTCTTCGTTTTCATAAAAGAAACACCATAAGCAAGAAGAGGAAGAAG 2664
Query 988 AGAAACAGAAGCAGCTCTGTTTCCAGTAGTGCTGCATCAAGCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCA 1061
.|||||||.|||||.||..|.|||||.||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CGAAACAGGAGCAGTTCCCTGTCCAGCAGTGCTGCCTCAAGCCCTGAAAGGAAAAAAAGGATCTTAAAACCCCA 2738
Query 1062 GCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTACACCTACACGATCAATACCGCCAAGACACAATGCTGCTC 1135
||||||.||||||...|||||||||.|||||||.|.|||||||.|||||.|||..||||||||.||||||||.|
Sbjct 2739 GCTAAAGTCAGAAGTATCTACCTCTCCATTCTCCATACCTACAAGATCAGTACTACCAAGACATAATGCTGCGC 2812
Query 1136 AGATAAACGGTAAAACAGAATCTAGTTCTGTGGTTCGAACCAGAAGCAACCGAGTGGTTGTAGATCCAGTTGTC 1209
|.||.||.||||||.|||||||.|||||||||||||||||.||.||||||||.||.|.||||||||||||||||
Sbjct 2813 AAATGAATGGTAAACCAGAATCCAGTTCTGTGGTTCGAACTAGGAGCAACCGTGTAGCTGTAGATCCAGTTGTC 2886
Query 1210 ACTGAGCAACCATCTACTTCTTCAGCTGCAAAGACTTTTATTACAAAAGCTAATGCATCTGCAATACCAGGGAA 1283
||.|||||.||.|||||.||.|||||..||||..|||||.||.|||||.|||||.|||||||.||.|||||.||
Sbjct 2887 ACCGAGCAGCCCTCTACATCATCAGCCACAAAAGCTTTTGTTTCAAAAACTAATACATCTGCCATGCCAGGAAA 2960
Query 1284 AACAATACTAGAGAATTCTGTGAAACATTCCAAAGCTTTGAATACTCTTTCCAGTCCTGGTCAATC----CAGT 1353
|.||||.||||||||||||||||.||||||||||||.||||..||.||||||||.|||| ||| ||..
Sbjct 2961 AGCAATGCTAGAGAATTCTGTGAGACATTCCAAAGCCTTGAGCACACTTTCCAGCCCTG----ATCCGCTCACA 3030
Query 1354 TTTAGTCATGGCACTAGGAATAATTCTGCAAAAGAAAACATGGAAAAGGAAAAGCCAGTCAAACGTAAAATGAA 1427
||.||.||||..||.|.|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 3031 TTCAGCCATGCTACAAAGAATAATTCTGCAAAAGAAAACATGGAAAAGGAAAAGCCTGTCAAACGTAAAATGAA 3104
Query 1428 GTCATCTGTACTCCCAAAGGCGTCCACTCTTTCAAAGTCATCAGCTGTCATTGAGCAAGGAGATTGTAAGAACA 1501
|||.|||||..|..||||.||.||..|.|||.||||||||.|.||.|||||.|||||||||||.||||||||||
Sbjct 3105 GTCTTCTGTGTTTTCAAAAGCATCTCCACTTCCAAAGTCAGCCGCAGTCATAGAGCAAGGAGAGTGTAAGAACA 3178
Query 1502 ACGCTCTTGTACCAGGAACCATTCAAGTAAATGGCCATGGAGGACAGCCATCAAAACTTGTGAAGAGGGGACCT 1575
|.|.||||.|||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.||||||
Sbjct 3179 ATGTTCTTATACCAGGAACCATTCAAGTAAATGGCCATGGAGGACAACCATCAAAACTCGTGAAGAGAGGACCT 3252
Query 1576 GGAAGGAAACCTAAAGTAGAAGTTAATACCAATAGTGGTGAAATTATACACAAGAAAAGGGGTAGAAAGCCCAA 1649
||.|||||.||.||.|||||||||||.||||..|||||||||.|.|.||||||||||||.||||||||||||||
Sbjct 3253 GGGAGGAAGCCCAAGGTAGAAGTTAACACCAGCAGTGGTGAAGTGACACACAAGAAAAGAGGTAGAAAGCCCAA 3326
Query 1650 AAAGCTACAGTATGCAAAGCCAGAAGATTTAGAGCAAAATAATGTGCATCCCATCAGAGATGAAGTACTTCCTT 1723
.||.||.||||.||||||||..|||.|.|..|||||||||||..|||||||||||||.|.|||.||.|||||||
Sbjct 3327 GAATCTGCAGTGTGCAAAGCAGGAAAACTCTGAGCAAAATAACATGCATCCCATCAGGGCTGACGTGCTTCCTT 3400
Query 1724 CTTCAACATGCAATTTTCTTTCTGAAACTAATAATGTAAAGGAAGATTTGTTACAGAAAAAGAATCGTGGAGGT 1797
|||||||||||||.||.|||||||||||||||..|||.|||||.|||||||||||||||||||.|||||||||.
Sbjct 3401 CTTCAACATGCAACTTCCTTTCTGAAACTAATGCTGTCAAGGAGGATTTGTTACAGAAAAAGAGTCGTGGAGGC 3474
Query 1798 AGGAAGCCCAAAAGGAAGATGAAGACACAAAAATTAGATGCAGATCTCCTAGTCCCTGCAAGTGTCAAAGTGTT 1871
||.||.|||||||||||||||||.||.||.||..|||||.||||.|||.||||.|||.|||.|||.||||||||
Sbjct 3475 AGAAAACCCAAAAGGAAGATGAAAACTCACAACCTAGATTCAGAACTCATAGTTCCTACAAATGTTAAAGTGTT 3548
Query 1872 AAGGAGAAGTAACCGAAAAAAGATAGATGATCCTATAGATGAGGAAGAAGAGTTTGAAGAACTCAAAGGCTCTG 1945
|||||||||||||||.|||||.|.||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 3549 AAGGAGAAGTAACCGGAAAAAAACAGATGATCCTATAGATGAGGAAGAGGAGTTTGAAGAACTCAAAGGCTCTG 3622
Query 1946 AACCCCACATGAGAACTAGAAATCAAGGTCGAAGGACAGCTTTCTATAATGAGGATGACTCTGAAGAGGAGCAA 2019
|.||.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||.||.||.
Sbjct 3623 AGCCTCACATGAGAACTAGAAATCAGGGTCGAAGGACAGCTTTCTATAATGAGGATGACTCGGAGGAAGAACAG 3696
Query 2020 AGGCAGCTGTTGTTCGAAGACACCTCTTTAACTTTTGGAACTTCTAGTAGAGGACGAGTCCGAAAGTTGACTGA 2093
||.||||||||||||||.||||||||.||.||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 3697 AGACAGCTGTTGTTCGAGGACACCTCCTTGACATTTGGAACTTCTAGTAGAGGACGAGTCCGAAAGTTGACTGA 3770
Query 2094 AAAAGCAAAAGCTAATTTAATTGGTTGG 2121
|||||||||.||||||||||||||||||
Sbjct 3771 AAAAGCAAAGGCTAATTTAATTGGTTGG 3798
