Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12140
- Subject:
- NM_001372093.1
- Aligned Length:
- 4047
- Identities:
- 470
- Gaps:
- 3576
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAAGAAGAAATTTTTACAGATAGAAAATGCTGCTGAAGAACCTAGAGTCTTATGTATTATACAAGATACTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAATTCAAAGACAGTGAATGAACGGATCACTTTAAATTTACCAGCATCTACTCCAGTCAGAAAGCTCTTTGAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGACTTGGTGTGGGGAAATGGAATCAATACTGCTGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATGGCACCACTGGATCATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCCAGGAAAGAAGAACTTTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCATTTGACAGATAAAGATGGTGAACAACCTCAAATACTGCTGGAGGATTCCAGTGCTGGGGAAGACAGTGTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCTGGGGGTTCTACCAGTGATTATGTCAGCCAAAGCTAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCTACTCATCTATTTTGAATAAATCAGAAACTGGATATGTGGGACTAGTAAACCAAGCAATGACTTGCTATTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAATGCATTATATAAGTGGGAATTTGAAGAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTTCAAAGGCTTTTTGTTTTGTTACAAACCAGCAAAAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGGATGGGATAGTAGTGAGGCTTGGCAGCAGCATGATGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAACAGAAATGGAAGCAAACAGAACAGGCTGATCTTATAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGAGCTATATCAAGGCAAGCTGAAGGACTACGTGAGATGTCTGGAATGTGGTTATGAGGGCTGGCGAATCGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACATATCTTGATATTCCATTGGTCATCCGACCTTATGGGTCCAGCCAAGCATTTGCTAGTGTGGAAGAAGCATT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAAATCAGTATTTTTGTGAACGTTGTAAGAAGAAGTGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTATCTGCTGACCTTACAGCTGAAAAGATTCGATTTTGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TATACAACCATGCATAGGATTAAACTGAATGATCGAATGACATTTCCCGAGGAACTAGATATGAGTACTTTTAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGACAGTGGAGCAGAAAATGAAGGTAGTTGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAGTGATCAGATGAGCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATCTGTCTTGAAACCAATAGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGAATTCCTTGATCTATGAACTTTTCTCTGTTATGGTTCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTGGGAGCGCTGCTGGTGGTCATTATTATGCATGTATAAAGTCATTCAGTGATGAGCAGTGGTACAGCTTCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATGATCAACATGTCAGCAGGATAACACAAGAGGACATTAAGAAAACACATGGTGGATCTTCAGGAAGCAGAGGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATATATGCTGATCTATAGACTGAAGGATCCAGCCAGAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATATTAAAAACTTGGTGCAGAAAGAGAGAGAGTTGGAAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACATGCAAGATAAAATTATTCTGTTTGCATCCTACAAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGATAAGACATTAAAGGAAGCAGTAGAAATGGCTTATAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCTGTCGCCTTGTTAAATATGATGAGTTTCATGATTATC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAGAACGGTCATATGAAGGAGAAGAAGATACACCAATGGGGCTTCTACTAGGTGGCGTCAAGTCAACATATATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGTTTTCCAATCTTATAAACCTGGAGAAGTGATGGTGAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCTCCTATAACTGTTCGTGCTTACTTAAATCAGACAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTACAGAATTCAAACAACTGATTTCAAAGGCCATCCATTTACCTGCTGAAACAATGAGAATAGTGCTGGAACGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAAAACCCTGAAAGCTGAAGGATTTTTTAGAAGTAACAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGGCCTTTGCAGACTCTCATTTATGGAAACTCCTGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCTGAACAATCCCCAGTATCTTATTCCAAAAGGACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGATGACTGTGAAAGAGTCAAAGGACCTGTAGGAAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAAAACTCAAAAGCTTGTCACTGCAGCAACAGCAGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGTGACTTTGAAAACATCGAATCACCTCTCAATGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAACAGCATATTCAGACTTCTGATCCAGAAAATTTTCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGGAGTACAAGTTCAGTGGACAGTGATATTCTTAGCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGCTCAGATCCCTTTGGCTAATGGACTTGACTCTCAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGAAAAAAGAAACATGGGATACAGCAGAAGAAGACTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATGTATTTCAAAGCTGAAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGATAAAAGAATTACTCTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGGTCTTTCGAGTGTATGC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCTGATGACAATAAGATTACAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACCAGCTTTTGGTCAATGAACAAGAG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGCAATCAAAAGAGGAATTAATTCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAATC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAACTGGGAGGTTTTCCTT 3552
Query 1 ------------------------ATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTC 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 GAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTC 3626
Query 51 AGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTA 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 AGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTA 3700
Query 125 GTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATTTCCCTGTGATATTTCT 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATTTCCCTGTGATATTTCT 3774
Query 199 GTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTG 272
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTG 3848
Query 273 TGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACAGATGAGCAAAGAAATG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 TGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACAGATGAGCAAAGAAATG 3922
Query 347 AACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTCACCTCGTAAAGAGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 AACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTCACCTCGTAAAGAGAAA 3996
Query 421 GCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 GCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC 4047
