Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12140
Subject:
NM_001372098.1
Aligned Length:
3915
Identities:
470
Gaps:
3444

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGATAGAAAATGCTGCTGAAGAACCTAGAGTCTTATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TATTATACAAGATACTACTAATTCAAAGACAGTGAATGAACGGATCACTTTAAATTTACCAGCATCTACTCCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCAGAAAGCTCTTTGAAGATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGACTTGGTGTGGGGAAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAATCAATACTGCTGATATGGCACCACTGGATCATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACAACCTCAAATACTGCTGGAGGATTCCAGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGGGGAAGACAGTGTTCATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCTGGGGGTTCTACCAGTGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TATGTCAGCCAAAGCTACTCCTACTCATCTATTTTGAATAAATCAGAAACTGGATATGTGGGACTAGTAAACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAATGACTTGCTATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAATGCATTATATA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTGGGAATTTGAAGAATCTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTTCAAAGGCTTTTTGTTTTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTACAAACCAGCAAAAAGAGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGGATGGGATAGTAGTGAGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGGCAGCAGCATGATGTACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAACAGAAATGGAAGCAAACAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AACAGGAAGAAGCATTGCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAAATCAGTATTTTTGTGAACGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGTAAGAAGAAGTGTGATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTATCTGCTGACCTTACAGCTGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAGATTCGATTTTGATTATACAACCATGCATAGGATTAAACTGAATGATCGAATGACATTTCCCGAGGAACTAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATATGAGTACTTTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGACAGTGGAGCAGAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AATGAAGGTAGTTGTCACAGTGATCAGATGAGCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATCTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCTTGAAACCAATAGTGGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGAATTCCTTGATCTATGAACTTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCTCTGTTATGGTTCATTCTGGGAGCGCTGCTGGTGGTCATTATTATGCATGTATAAAGTCATTCAGTGATGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGTGGTACAGCTTCAATGATCAACATGTCAGCAGGATAACACAAGAGGACATTAAGAAAACACATGGTGGATC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCAGGAAGCAGAGGATATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATATATGCTGATCTATAGACTGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGGATCCAGCCAGAAATGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATATTAAAAACTTGGTGCAGAAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAGAGAGAGTTGGAAGAACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACATGCAAGATAAAATTATTCTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTTGCATCCTACAAAACAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGATAAGACATTAAAGGAAGCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCTGTCGCCTTGTTAAATATGAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAGTTTCATGATTATCTAGAACGGTCATATGAAGGAGAAGAAGATACACCAATGGGGCTTCTACTAGGTGGCGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAGTCAACATATATGTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGTTTTCCAATCTTATAAACCTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGAAGTGATGGTGAAAGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCTCCTATAACTGTTCGTGCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TACTTAAATCAGACAGTTACAGAATTCAAACAACTGATTTCAAAGGCCATCCATTTACCTGCTGAAACAATGAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAAAACCCTGAAAGCTGAAGGAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTTTTAGAAGTAACAAGGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGGCCTTTGCAGACTCTCAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCTGAACAATCCCCAGTATC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGATGACTGTGAAAGAGTCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAAAACTCAAAAGCTTGTCA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGTGACTTTGAAAACATCGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAACAGCATATTCAGACTTCTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGGAGTACAAGTTCAGTGGAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGCTCAGATCCCTTTGGCTAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGAAAAAAGAAACATGGGATA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CAGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCTGAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACCAGCTTTT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGCAATCAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAA  3404

Query    1  ----------------------------------------ATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAA  34
                                                    ||||||||||||||||||||||||||||||||||
Sbjct 3405  CTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAA  3478

Query   35  GACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAA  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  GACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAA  3552

Query  109  TTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATT  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  TTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATT  3626

Query  183  TCCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCT  256
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 3627  TCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCT  3700

Query  257  GGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACA  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701  GGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACA  3774

Query  331  GATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTC  404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTC  3848

Query  405  ACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC  471
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  ACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGAC  3915

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