Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12140
- Subject:
- NM_001372099.1
- Aligned Length:
- 3858
- Identities:
- 470
- Gaps:
- 3387
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGCACCACTGGATCATACCAGTGACAAGTCACTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGACGCTAATTTTGAGCCAGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACAACCTCAAATAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCTGGAGGATTCCAGTGCTGGGGAAGACAGTGTTCATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGGGTTCTACCAGTGATTATGTCAGCCAAAGCTACTCCTACTCATCTATTTTGAATAAATCAGAAACTGGATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTGGGACTAGTAAACCAAGCAATGACTTGCTATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTAGGAATGCATTATATAAGTGGGAATTTGAAGAATCTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAAAGGCTTTTTGTTTTGTTACAAACCAGCAAAAAGAGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGGGATAGTAGTGAGGCTTGGCAGCAGCATGATGTACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAAATGGAAGCAAACAGAACAGGCTGATCTTATAAATGAGCTATATCAAGGCAAGCTGAAGGACTACGTGAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTCTGGAATGTGGTTATGAGGGCTGGCGAATCGACACATATCTTGATATTCCATTGGTCATCCGACCTTATGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCCAGCCAAGCATTTGCTAGTGTGGAAGAAGCATTGCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATCAGTATTTTTGTGAACGTTGTAAGAAGAAGTGTGATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGCTGACCTTACAGCTGAAAAGATTCGATTTTGATTATACAACCATGCATAGGATTAAACTGAATGATCGAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACATTTCCCGAGGAACTAGATATGAGTACTTTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCACTGACAGTGGAGCAGAAAATGAAGGTAGTTGTCACAGTGATCAGATGAGCAACGATTTCTCCAATGATGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGTGTTGATGAAGGAATCTGTCTTGAAACCAATAGTGGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTCCTTGATCTATGAACTTTTCTCTGTTATGGTTCATTCTGGGAGCGCTGCTGGTGGTCATTATTATGCATGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TAAAGTCATTCAGTGATGAGCAGTGGTACAGCTTCAATGATCAACATGTCAGCAGGATAACACAAGAGGACATT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGAAAACACATGGTGGATCTTCAGGAAGCAGAGGATATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATGCTGATCTATAGACTGAAGGATCCAGCCAGAAATGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTAAAAACTTGGTGCAGAAAGAGAGAGAGTTGGAAGAACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGCAAGATAAAATTATTCTGTTTGCATCCTACAAAACAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAAGACATTAAAGGAAGCAGTAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTCGCCTTGTTAAATATGATGAGTTTCATGATTATCTAGAACGGTCATATGAAGGAGAAGAAGATACACCAATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGGCTTCTACTAGGTGGCGTCAAGTCAACATATATGTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTCCAATCTTATAAACCTGGAGTGATGGTGAAAGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTATAACTGTTCGTGCTTACTTAAATCAGACAGTTACAGAATTCAAACAACTGATTTCAAAGGCCATCCATTTA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCTGCTGAAACAATGAGAATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAAAAC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCTGAAAGCTGAAGGATTTTTTAGAAGTAACAAGGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCTTTGCAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAACAATCCCCAGTATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGACTGTGAAAGAGTCAAAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AACTCAAAAGCTTGTCACTGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GACTTTGAAAACATCGAATCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCATATTCAGACTTCTGATCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTACAAGTTCAGTGGACAGTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGATCCCTTTGGCTAATGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAAGAAACATGGGATACAGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCCTCTCACTTCAAGGTCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTCATCATTTTCTGATGACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAAGTATACCAGCTTTTGGTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GACTGTACGGCAATCAAAAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GGTTTCGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGAT 3330
Query 1 ---------------------------------------------------------ATGAAGTCCATGTCACA 17
|||||||||||||||||
Sbjct 3331 ATTAATATTTCCAGCAACTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCACA 3404
Query 18 GCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAA 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 GCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAA 3478
Query 92 GCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCT 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCT 3552
Query 166 AAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAAAGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 3553 AAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAGT 3626
Query 240 TTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAG 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAG 3700
Query 314 AATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 AATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGA 3774
Query 388 CATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 CATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCT 3848
Query 462 GACTCAAGAC 471
||||||||||
Sbjct 3849 GACTCAAGAC 3858
