Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12140
- Subject:
- NM_001372101.1
- Aligned Length:
- 3861
- Identities:
- 296
- Gaps:
- 3564
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGCACCACTGGATCATACCAGTGACAAGTCACTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGACGCTAATTTTGAGCCAGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACAACCTCAAATAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCTGGAGGATTCCAGTGCTGGGGAAGACAGTGTTCATGACAGGTTTATAGGTCCGCTTCCAAGAGAAGGTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGGGTTCTACCAGTGATTATGTCAGCCAAAGCTACTCCTACTCATCTATTTTGAATAAATCAGAAACTGGATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTGGGACTAGTAAACCAAGCAATGACTTGCTATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTAGGAATGCATTATATAAGTGGGAATTTGAAGAATCTGAAGAAGATCCAGTGACAAGTATTCCATACCAACTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAAAGGCTTTTTGTTTTGTTACAAACCAGCAAAAAGAGAGCAATTGAAACCACAGATGTTACAAGGAGCTTTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGGGATAGTAGTGAGGCTTGGCAGCAGCATGATGTACAAGAACTATGCAGAGTCATGTTTGATGCTTTGGAAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAAATGGAAGCAAACAGAACAGGCTGATCTTATAAATGAGCTATATCAAGGCAAGCTGAAGGACTACGTGAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTCTGGAATGTGGTTATGAGGGCTGGCGAATCGACACATATCTTGATATTCCATTGGTCATCCGACCTTATGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCCAGCCAAGCATTTGCTAGTGTGGAAGAAGCATTGCATGCATTTATTCAGCCAGAGATTCTGGATGGCCCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATCAGTATTTTTGTGAACGTTGTAAGAAGAAGTGTGATGCACGGAAGGGCCTTCGGTTTTTGCATTTTCCTTAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGCTGACCTTACAGCTGAAAAGATTCGATTTTGATTATACAACCATGCATAGGATTAAACTGAATGATCGAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACATTTCCCGAGGAACTAGATATGAGTACTTTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCACTGACAGTGGAGCAGAAAATGAAGGTAGTTGTCACAGTGATCAGATGAGCAACGATTTCTCCAATGATGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGTGTTGATGAAGGAATCTGTCTTGAAACCAATAGTGGAACTGAAAAGATCTCAAAATCTGGACTTGAAAAGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTCCTTGATCTATGAACTTTTCTCTGTTATGGTTCATTCTGGGAGCGCTGCTGGTGGTCATTATTATGCATGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TAAAGTCATTCAGTGATGAGCAGTGGTACAGCTTCAATGATCAACATGTCAGCAGGATAACACAAGAGGACATT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGAAAACACATGGTGGATCTTCAGGAAGCAGAGGATATTATTCTAGTGCTTTCGCAAGTTCCACAAATGCATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATGCTGATCTATAGACTGAAGGATCCAGCCAGAAATGCAAAATTTCTAGAAGTGGATGAATACCCAGAACATA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTAAAAACTTGGTGCAGAAAGAGAGAGAGTTGGAAGAACAAGAAAAGAGACAACGAGAAATTGAGCGCAATACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGCAAGATAAAATTATTCTGTTTGCATCCTACAAAACAAGTAATGATGGAAAATAAATTGGAGGTTCATAAGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAAGACATTAAAGGAAGCAGTAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCCCTGGATTGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTCGCCTTGTTAAATATGATGAGTTTCATGATTATCTAGAACGGTCATATGAAGGAGAAGAAGATACACCAATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGGCTTCTACTAGGTGGCGTCAAGTCAACATATATGTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTCCAATCTTATAAACCTGGAGAAGTGATGGTGAAAGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCCTATAACTGTTCGTGCTTACTTAAATCAGACAGTTACAGAATTCAAACAACTGATTTCAAAGGCCATCCAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTACCTGCTGAAACAATGAGAATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCAGTGTCTCCAGTAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AACCCTGAAAGCTGAAGGATTTTTTAGAAGTAACAAGGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGCCTTTGCAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCTGAACAATCCCCAGTATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGATGACTGTGAAAGAGTCAAAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AAAAACTCAAAAGCTTGTCACTGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGTGACTTTGAAAACATCGAATCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACAGCATATTCAGACTTCTGATCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGAGTACAAGTTCAGTGGACAGTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCTCAGATCCCTTTGGCTAATGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAAAAAAGAAACATGGGATACAGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGGGAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTGTCCTCTCACTTCAAGGTCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CACTTTCATCATTTTCTGATGACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GTTAAAGTATACCAGCTTTTGGTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATGACTGTACGGCAATCAAAAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAA 3330
Query 1 ------------------------------------------------------------ATGAAGTCCATGTC 14
||||||||||||||
Sbjct 3331 GATATTAATATTTCCAGCAACTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTC 3404
Query 15 ACAGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGG 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 ACAGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGG 3478
Query 89 AAAGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTT 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AAAGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTT 3552
Query 163 GCTAAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTAGACTGGAATCCTAA 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 3553 GCTAAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAA 3626
Query 237 AGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAG 310
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3627 AGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGAT-------------------GGGATAAAACAG 3681
Query 311 AAGAATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACT 384
||||||
Sbjct 3682 AAGAAT-------------------------------------------------------------------- 3687
Query 385 GGACATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGA 458
Sbjct 3688 -------------------------------------------------------------------------- 3687
Query 459 TCTGACTCAAGAC 471
Sbjct 3688 ------------- 3687
