Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12162
- Subject:
- XR_001783735.1
- Aligned Length:
- 3125
- Identities:
- 524
- Gaps:
- 2555
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTATGGCGTCACTTCCGCTGGCCCCGCCATCTTGTTCCCAGGGGCAGTTGGCGGAAGAGATCGAGCTCCTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCCGTTCTGCTTTGCGTCCGGAGTTCTCCCCGCCTCGTTTTTGGCGTCCGTCTCGGGCCCGGGCTCCCGTGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGGCGTCCCAGTTGCAGTTTCCCGCTCGGCTGGGGCACAACGCGGCGGGCTCCTTGCCCCGACGGCCTTCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGAGTAGGTCCGGGACCGTTGTCCCGAAGAGCGCGATCGAGCTTGGCCTCCCTCCTCCCGCCCGCCCTCCTTC 296
Query 1 -----------------ATGGCTAACAACAGCCCCGCGCTGACAGGCAACTCGCAGCCGCAGCACCAGGCGGCT 57
|||||.||||||||||||||||||||.|||||||||||.|||||||||||||||||.
Sbjct 297 CTTCCTGCCGCGGCACCATGGCCAACAACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCACCAGGCGGCC 370
Query 58 GCAGCTGCGGCTCAGCAACAGCAGCAGT---GCGGCGGCGGCGGCGCTACCAAGCCGGCGGTCTCCGGCAAGCA 128
||.||.|.|.|.|||||.||||||||.| ||||||||||||||||.||||||||||||||.||.||||||||
Sbjct 371 GCGGCCGTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGGCGGCGCCACCAAGCCGGCGGTGTCGGGCAAGCA 444
Query 129 GGGCAATGTGCTCCCGCTCTGGGGCAACGAGAAGACCATGAACCTCAACCCCATGATCCTGACCAACATCCTGT 202
||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 445 GGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAACCTCAACCCCATGATCCTCACCAACATCCTGT 518
Query 203 CGTCGCCTTACTTCAAAGTACAGCTCTACGAGCTCAAGACCTACCACGAGGTGGTGGACGAGATCTACTTTAAG 276
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGTCGCCTTACTTCAAAGTGCAGCTCTACGAGCTCAAGACCTACCACGAGGTGGTGGACGAGATCTACTTTAAG 592
Query 277 GTCACGCACGTTGAACCATGGGAGAAAGGAAGCAGGAAAACAGCGGGCCAGACAGGGATGTGCGGAGGGGTTCG 350
||||||||.|||||.||||||||.||.||.||.||||||||.||.||||||||.||||||||||||||||||||
Sbjct 593 GTCACGCATGTTGAGCCATGGGAAAAGGGGAGTAGGAAAACTGCTGGCCAGACGGGGATGTGCGGAGGGGTTCG 666
Query 351 AGGTGTTGGAACAGGAGGAATTGTTTCTACAGCATTTTGCCTGTTATACAAATTATTTACCCTGAAGTTAACTC 424
||||||||||||||||||.|||||||||||||||||||||||..||||||||||||||||||||||||||||||
Sbjct 667 AGGTGTTGGAACAGGAGGCATTGTTTCTACAGCATTTTGCCTTCTATACAAATTATTTACCCTGAAGTTAACTC 740
Query 425 GAAAGCAAGTGATGGGTCTTATAACACACACAGACTCTCCATATATTAGAGCGCTTGGATTTATGTATATAAGA 498
|||||||||||||||||||.||||||||.|||||||||||||||||.|||||.||||||||||||||||||||.
Sbjct 741 GAAAGCAAGTGATGGGTCTCATAACACATACAGACTCTCCATATATCAGAGCCCTTGGATTTATGTATATAAGG 814
Query 499 TATACACAGCCCCCTACAGATCTGTGGGACTGGTTTGAATCCTTCCTTGATGATGAAGAGTTCT-----TCACC 567
|||||.||.|||||||||||.|||||||||||||||||.|||||||||||||||||.|||.|.| |.||.
Sbjct 815 TATACCCAACCCCCTACAGACCTGTGGGACTGGTTTGAGTCCTTCCTTGATGATGAGGAGGTTTGGGACTGACA 888
Query 568 CTC----------------------------------------------------------------------- 570
.|.
Sbjct 889 ATAGCTGACTAACATGTCCTGAGCTGTGAGAGGGCATAGCAAGAAGGCCTTCATGCGGACCTAGATGTCAAAGC 962
Query 571 -------------------------------------------------------------------------- 570
Sbjct 963 TGGTGGAGGCTGTGTAATGACCATTGGAGAGATGCTTCGTTCTTTTCTCACAAAACTGGAATGGTTTTCTACTT 1036
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1037 TGTTTCCAAGAATTCCAGTTCCAGTCCAGAAGAACATTGATCAGCAGATTAAAACTCGACCTAGGAAAATCAAG 1110
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1111 AAAGACGGAAAGGAAGGCATTGAGGAGATAGACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGATC 1184
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1185 ACTGAGCCCACGGAGGTCTCCAAGAAGATCAAGAAGCAGAAGTCATCACCGGGAGGGCCATGGATCTTCTAGTT 1258
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1259 TTGACAGAGAATTAGAGAGAGAGAAAGAACGCCAACGACTAGAGCGGGAAGCCAAAGAGAGAGAGAAAGAAAGG 1332
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1333 CGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAG 1406
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1407 TCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGATCGGGAAAGAGAGAAAGAAAATGAGAGGGGTCGAA 1480
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1481 GACGAGACCGAGATTATGACAAGGAGAGAGGCAGTGACCGAGAAAGGGACAGAGAGAGATCAAGAGAGCGCTCC 1554
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1555 AAGGAGCAGAGAAGTAGGGGTGATGGAGAAGAGAAGAAGCACAAAGAAGACAAGGAGGACAGACGACACAGAGA 1628
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1629 TGACAAAAAAGAGTCCAAGAAAAAACACAGCAGAAGCAGGAGCAGAGAGAGGAAACACAGGAGCAGGAGCAGAA 1702
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1703 ACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCA 1776
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1777 AATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTGAAAAGAGAAAACGAGAACACAGCCCTAG 1850
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1851 CAGAGAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACC 1924
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1925 AGTCAGACAGACAGGATCATCAGAGCAGCCAGAGTGGAGAGCCAGAGAGCCAAGAAAAGGAACACAAAAGCAAA 1998
Query 571 -------------------------------------------------------------------------- 570
Sbjct 1999 GATGAGACTGTGTGAAGATTGTGTAAACTTGGATCACATTGAATCCTATAAATGTTGATTAAATTCTGCTTTTT 2072
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2073 TCCCCCCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTTTTCTTTTGTGTAGGG 2146
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2147 AAGTGCCTTTGTAATCCCATTACGCATTGATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCT 2220
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2221 TGCATTTTTGTTTGTTTTTAAAATGTACAGTCTGTACATACGTCCTGGAAAATGTTTTAATTCCTTTGGCATGG 2294
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2295 TTGCCATGTTGGTTAAATTTGTATAAGGCAATAAACTGCCACTAATTCTATTTTTGTTTTGTAGGTGTGAGATT 2368
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2369 ATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAATAGAATGCTAAAGACTTTGGGAATGGATCTTGG 2442
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2443 ATGTTTGTTTAGGAGAATTATGTGTTTTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCA 2516
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2517 CTGTATATTACCTTGGAAGCTCTTGTTAATATGTTGTTATTCTCCACAGTTAATGTTCGAGAGAATTTTTAAGA 2590
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2591 GGTTTAAATTAGGCTTAGATTTGATCAGAAGTCCTTTTAGCATTCTACCTCAAAGGGACACTGTTAGTATGCCT 2664
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2665 AAAATTTATTACTTTCCTTTTTACAATGTGCTTCCCCCTCCCTCTTGAATTCTTTCTCAGACTTTAAAAGTACT 2738
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2739 ATATTAAAGTGTGTAAGCCTGGCGTTGTAGCAGCCCTATACTAAGGAGTGATTGGGAGAGGGCGGGGCGCAGGA 2812
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2813 GCAGGCGAGGGCGGGGCGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAATA 2886
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2887 CTTAAATTATGAAACAGCTTGATATAGTATCCTTTTTTAAGAATTTAAAACTTTTTTTATTGATAATGAAGATT 2960
Query 571 -------------------------------------------------------------------------- 570
Sbjct 2961 GCTGTTTGAGTTTTTAAACTTAATCTAGGACAGAAATATTACCAGTAATGCAGTGCTGCGTTATTTAAGACTAT 3034
Query 571 -------------------------------------------------------------------------- 570
Sbjct 3035 CAGCAAATTATTTGATAGATTGTTCTTATGACTTGTATTCTGATTTCAGAAAACCATCATGAGTGTGGAATAAA 3108
Query 571 ----------------- 570
Sbjct 3109 TACTGGATTAAATCCTT 3125
