Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12167
- Subject:
- XR_001738804.2
- Aligned Length:
- 3105
- Identities:
- 1750
- Gaps:
- 1355
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAACTTCCGGCGGGAACCGGAAGGTGCGGTGGCACTCACGGAATCTCGGGTCTTCTGACGTGCCGGGCGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGTCATCATTGCCAAGAAGAGCGAAAGTACAGGTCCAGGATGTGGTACTGAAAGATGAATTTTCTTCATTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTGAGTTATCATCTGCCTCTGAAGAAGATGACAAGGAAGATAGTGCCTGGGAGCCCCAAAAGAAAGTTCCCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGCCGTAAACAGCCCCCTCCCAAGGAATCCAAACCAAAGAGGATGCCTCGGGTGAAGAAGAATGCCCCACAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTGATGGCTCAGAAGTCGTTGTTGTTAAGGAGGAGCTGAATAGCTCTGTGGCTATTGCTGATACTGCTTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGACAGAAAAAATAAATTGGATACTGTACAGACTCTGAAAACAGCCAAGACAAAACAGAAATGTGCAGCGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCACATACAGTTCGAAGGACTAAAAAGCTGAAAGTTGAAGAAGAAACCAGCAAAGCCAGCAACTTAGAGGGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAGTAATAGTTCAGAGACACCATCCACAAGCACTGTGTGGGGAGGTACATGCAAGAAGGAAGAGAATGACGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GACTTTACATTTGGTCAGTCCGCTTTAAAGAAAATCAAGACTGAGACATATCCTCAGGGGCAGCCTGTCAAGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCAGCAAATGCCAATAGTACTAAAGAGGAGGTGGAAATGAATTGGGACATGGTACAGGTTTTATCTGAGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTAATATTGAACCTTGGGTTTGTGCCAACATCATTCGTCTCTTTAATGATGATAACACAATTCCCTTCATTATA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGTTATAGAAAAGAGCTCATTAATAACCTTGATGCTGATTCCTTGAGAGAAGTTCAGCAAACCCTAGAAGAGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACGGGCTGTTGCAAAGAAAGTTCATAGTACAATCCAGAAAATTAAGAAGGAAGGGAAGATGTCTGAGTGCTTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAAAAGCCATGCTGAATTGTAAAACTTTTGAAGAACTAGAACACGTGTCTGCTCCATATAAAACTGGAAGCAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGACTAAAGCCCAGAGAGCAAGACAGTTGGGCTTAGAAGGAGCAGCCAGGGCACTGCTTGAGAAACCAGGGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTCAGTCTGCTATCGTACATTAGGCCTGACGTTAAAGGGCTTTCAACGCTTCAGGATATTGAAATAGGAGTGC 1184
Query 1 -----------------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCATATTTTAGCAGATATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA 1258
Query 58 CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT 1332
Query 132 GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA 1406
Query 206 ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA 1480
Query 280 AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT 1554
Query 354 TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG 1628
Query 428 TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG 1702
Query 502 GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT 1776
Query 576 TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA 1850
Query 650 CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT 1924
Query 724 TTTGCACCACTGGATGTTGTTTACT--------------------------------------------GTATC 753
||||||||||||||||||||||||| |||||
Sbjct 1925 TTTGCACCACTGGATGTTGTTTACTGCTTTGAAGCCTATGAATCATTACCCTTCAGAACTGAGAGCCAAGTATC 1998
Query 754 GTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAA 2072
Query 828 TTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGC 2146
Query 902 ACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAA 2220
Query 976 GAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAA 2294
Query 1050 TGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCGAGAACAGCTGAAGA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCGAGAACAGCTGAAGA 2368
Query 1124 AAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACCAGGATTATATCCGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACCAGGATTATATCCGA 2442
Query 1198 ACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 ACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGA 2516
Query 1272 GGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGG 2590
Query 1346 ACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTGTCATCCATTGGAGGGACACTGTAT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 ACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTGTCATCCATTGGAGGGACACTGTAT 2664
Query 1420 GAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAGGAAGGAATGGAGAAAATTGCAGA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAGGAAGGAATGGAGAAAATTGCAGA 2738
Query 1494 AAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTC 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 AAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTC 2812
Query 1568 GAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTT 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTT 2886
Query 1642 ACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCC 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 ACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCC 2960
Query 1716 CATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAA 1789
|||||||||||||||||||||||||||||||||||
Sbjct 2961 CATACGAAATGTAACAGAAGCAAAACTTTCAAAAA--------------------------------------- 2995
Query 1790 GAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA 1860
Sbjct 2996 ----------------------------------------------------------------------- 2995
