Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12167
Subject:
XR_001738806.2
Aligned Length:
3694
Identities:
1768
Gaps:
1926

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAAACTTCCGGCGGGAACCGGAAGGTGCGGTGGCACTCACGGAATCTCGGGTCTTCTGACGTGCCGGGCGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGATGTCATCATTGCCAAGAAGAGCGAAAGTACAGGTCCAGGATGTGGTACTGAAAGATGAATTTTCTTCATTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCTGAGTTATCATCTGCCTCTGAAGAAGATGACAAGGAAGATAGTGCCTGGGAGCCCCAAAAGAAAGTTCCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGCCGTAAACAGCCCCCTCCCAAGGAATCCAAACCAAAGAGGATGCCTCGGGTGAAGAAGAATGCCCCACAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCAGTGATGGCTCAGAAGTCGTTGTTGTTAAGGAGGAGCTGAATAGCTCTGTGGCTATTGCTGATACTGCTTTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAGACAGAAAAAATAAATTGGATACTGTACAGACTCTGAAAACAGCCAAGACAAAACAGAAATGTGCAGCGCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCACATACAGTTCGAAGGACTAAAAAGCTGAAAGTTGAAGAAGAAACCAGCAAAGCCAGCAACTTAGAGGGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAGTAATAGTTCAGAGACACCATCCACAAGCACTGTGTGGGGAGGTACATGCAAGAAGGAAGAGAATGACGAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GACTTTACATTTGGTCAGTCCGCTTTAAAGAAAATCAAGACTGAGACATATCCTCAGGGGCAGCCTGTCAAGTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCCAGCAAATGCCAATAGTACTAAAGAGGAGGTGGAAATGAATTGGGACATGGTACAGGTTTTATCTGAGAGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTAATATTGAACCTTGGGTTTGTGCCAACATCATTCGTCTCTTTAATGATGATAACACAATTCCCTTCATTATA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGTTATAGAAAAGAGCTCATTAATAACCTTGATGCTGATTCCTTGAGAGAAGTTCAGCAAACCCTAGAAGAGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACGGGCTGTTGCAAAGAAAGTTCATAGTACAATCCAGAAAATTAAGAAGGAAGGGAAGATGTCTGAGTGCTTGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAAAAGCCATGCTGAATTGTAAAACTTTTGAAGAACTAGAACACGTGTCTGCTCCATATAAAACTGGAAGCAAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGACTAAAGCCCAGAGAGCAAGACAGTTGGGCTTAGAAGGAGCAGCCAGGGCACTGCTTGAGAAACCAGGGGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTCAGTCTGCTATCGTACATTAGGCCTGACGTTAAAGGGCTTTCAACGCTTCAGGATATTGAAATAGGAGTGC  1184

Query    1  -----------------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGCATATTTTAGCAGATATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA  1258

Query   58  CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT  1332

Query  132  GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA  1406

Query  206  ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA  1480

Query  280  AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT  1554

Query  354  TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG  1628

Query  428  TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG  1702

Query  502  GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT  1776

Query  576  TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA  1850

Query  650  CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT  1924

Query  724  TTTGCACCACTGGATGTTGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGC  797
            |||||||||||||||||||||||||                                                 
Sbjct 1925  TTTGCACCACTGGATGTTGTTTACT-------------------------------------------------  1949

Query  798  TAACAAAGAGATGCCAGGGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCAT  871
                                                       |||||||||||||||||||||||||||||||
Sbjct 1950  -------------------------------------------GTTTCCATAGCAAGGCGTGTACAAGATCCAT  1980

Query  872  TAGCTGAGCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTA  945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981  TAGCTGAGCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTA  2054

Query  946  CTCAAGGCAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGA  1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055  CTCAAGGCAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGA  2128

Query 1020  AGTTTTGTTAAGGCATATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATG  1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129  AGTTTTGTTAAGGCATATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATG  2202

Query 1094  GACCCTTTATCAACCGAGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGC  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203  GACCCTTTATCAACCGAGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGC  2276

Query 1168  TTCATCAGAATCAACCAGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGG  1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277  TTCATCAGAATCAACCAGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGG  2350

Query 1242  AGTTGCTGTGACATCTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAG  1315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351  AGTTGCTGTGACATCTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAG  2424

Query 1316  TGAATGTTTTACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGG  1389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2425  TGAATGTTTTACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGG  2498

Query 1390  TTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCT  1463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499  TTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCT  2572

Query 1464  TGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATG  1537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2573  TGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATG  2646

Query 1538  GTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGC  1611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647  GTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGC  2720

Query 1612  CTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGA  1685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2721  CTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGA  2794

Query 1686  TATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGA  1759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2795  TATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGA  2868

Query 1760  GAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGG  1833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2869  GAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGG  2942

Query 1834  ATTACTCTGGACCTCATTCGGGTGTTA-----------------------------------------------  1860
            |||||||||||||||||||||||||||                                               
Sbjct 2943  ATTACTCTGGACCTCATTCGGGTGTTATGAGTATCCCACGAAGGCCAGACGCTGATTTTATTTTCTCATTTCCA  3016

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3017  CAGATTGACAAGGATAAGTCAGTTGTTTGTAAACTCTAGGTAGCAGATGAGAAATAATTCACTTAATATCAGAA  3090

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3091  ATATTTTCCAAACACTTTCCTTTATTTTTTCTTCTGAATAAATAGAAAACCAACAGTTTGATTTCCTTTTCCCT  3164

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3165  TAAAGGAAACAACTAATACACATTCTTATATGGCTTTATGTAGTAATAGTTTTCTGACTAAAATTTTGTTTTTT  3238

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3239  ATTTTTTGTAATTTATCTTTAACTCCTTTTGCATTTTGTATAACAGATTGCTTAACTTCTACTTGCCAACATCT  3312

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3313  GCCTTGCTGGACTTGTATGGGATTGTCTTCTTGATTTGAATTGTACCGTCTTTGTTGACACAGTAGGGCTGGGC  3386

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3387  AGTGTTTAATCCTTCCATTTTATAGATTTTTTTTTAATCAGGCCTTTTGGACTTCATTCATAATTTTGCAATAA  3460

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3461  TCTCTTTTCCCTTGTCATGCAAGCCAAAAATATACCAGTAAAACAGATTCTGACGTGTTTGTAGTTATCAAATG  3534

Query 1861  --------------------------------------------------------------------  1860
                                                                                
Sbjct 3535  AATGGCTCGAAACACTTCTCAAAAGGATATACGTATTGACCCCAACAATAAATGTTTGTGGCTAGTGA  3602

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