Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12167
- Subject:
- XR_002959310.1
- Aligned Length:
- 3738
- Identities:
- 1777
- Gaps:
- 1961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAACTTCCGGCGGGAACCGGAAGGTGCGGTGGCACTCACGGAATCTCGGGTCTTCTGACGTGCCGGGCGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGTCATCATTGCCAAGAAGAGCGAAAGTACAGGTCCAGGATGTGGTACTGAAAGATGAATTTTCTTCATTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTGAGTTATCATCTGCCTCTGAAGAAGATGACAAGGAAGATAGTGCCTGGGAGCCCCAAAAGAAAGTTCCCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGCCGTAAACAGCCCCCTCCCAAGGAATCCAAACCAAAGAGGATGCCTCGGGTGAAGAAGAATGCCCCACAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTGATGGCTCAGAAGTCGTTGTTGTTAAGGAGGAGCTGAATAGCTCTGTGGCTATTGCTGATACTGCTTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGACAGAAAAAATAAATTGGATACTGTACAGACTCTGAAAACAGCCAAGACAAAACAGAAATGTGCAGCGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCACATACAGTTCGAAGGACTAAAAAGCTGAAAGTTGAAGAAGAAACCAGCAAAGCCAGCAACTTAGAGGGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAGTAATAGTTCAGAGACACCATCCACAAGCACTGTGTGGGGAGGTACATGCAAGAAGGAAGAGAATGACGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GACTTTACATTTGGTCAGTCCGCTTTAAAGAAAATCAAGACTGAGACATATCCTCAGGGGCAGCCTGTCAAGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCAGCAAATGCCAATAGTACTAAAGAGGAGGTGGAAATGAATTGGGACATGGTACAGGTTTTATCTGAGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTAATATTGAACCTTGGGTTTGTGCCAACATCATTCGTCTCTTTAATGATGATAACACAATTCCCTTCATTATA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGTTATAGAAAAGAGCTCATTAATAACCTTGATGCTGATTCCTTGAGAGAAGTTCAGCAAACCCTAGAAGAGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACGGGCTGTTGCAAAGAAAGTTCATAGTACAATCCAGAAAATTAAGAAGGAAGGGAAGATGTCTGAGTGCTTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAAAAGCCATGCTGAATTGTAAAACTTTTGAAGAACTAGAACACGTGTCTGCTCCATATAAAACTGGAAGCAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGACTAAAGCCCAGAGAGCAAGACAGTTGGGCTTAGAAGGAGCAGCCAGGGCACTGCTTGAGAAACCAGGGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTCAGTCTGCTATCGTACATTAGGCCTGACGTTAAAGGGCTTTCAACGCTTCAGGATATTGAAATAGGAGTGC 1184
Query 1 -----------------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCATATTTTAGCAGATATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGA 1258
Query 58 CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCT 1332
Query 132 GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA 1406
Query 206 ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAA 1480
Query 280 AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTT 1554
Query 354 TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAG 1628
Query 428 TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTG 1702
Query 502 GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGT 1776
Query 576 TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCA 1850
Query 650 CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTAT 1924
Query 724 TTTGCACCACTGGATGTTGTTTACT--------------------------------------------GTATC 753
||||||||||||||||||||||||| |||||
Sbjct 1925 TTTGCACCACTGGATGTTGTTTACTGCTTTGAAGCCTATGAATCATTACCCTTCAGAACTGAGAGCCAAGTATC 1998
Query 754 GTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAA 2072
Query 828 TTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGC 901
|||||||||||
Sbjct 2073 TTTGAGAAGTG--------------------------------------------------------------- 2083
Query 902 ACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 --------------------CAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAA 2137
Query 976 GAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 GAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAA 2211
Query 1050 TGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCGAGAACAGCTGAAGA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 TGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCGAGAACAGCTGAAGA 2285
Query 1124 AAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACCAGGATTATATCCGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 AAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACCAGGATTATATCCGA 2359
Query 1198 ACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2360 ACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGA 2433
Query 1272 GGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2434 GGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGG 2507
Query 1346 ACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTGTCATCCATTGGAGGGACACTGTAT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 ACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTGTCATCCATTGGAGGGACACTGTAT 2581
Query 1420 GAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAGGAAGGAATGGAGAAAATTGCAGA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2582 GAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAGGAAGGAATGGAGAAAATTGCAGA 2655
Query 1494 AAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTC 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2656 AAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTC 2729
Query 1568 GAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTT 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 GAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTT 2803
Query 1642 ACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCC 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2804 ACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCC 2877
Query 1716 CATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAA 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2878 CATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAA 2951
Query 1790 GAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA--- 1860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2952 GAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTATGA 3025
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3026 GTATCCCACGAAGGCCAGACGCTGATTTTATTTTCTCATTTCCACAGATTGACAAGGATAAGTCAGTTGTTTGT 3099
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3100 AAACTCTAGGTAGCAGATGAGAAATAATTCACTTAATATCAGAAATATTTTCCAAACACTTTCCTTTATTTTTT 3173
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3174 CTTCTGAATAAATAGAAAACCAACAGTTTGATTTCCTTTTCCCTTAAAGGAAACAACTAATACACATTCTTATA 3247
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3248 TGGCTTTATGTAGTAATAGTTTTCTGACTAAAATTTTGTTTTTTATTTTTTGTAATTTATCTTTAACTCCTTTT 3321
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3322 GCATTTTGTATAACAGATTGCTTAACTTCTACTTGCCAACATCTGCCTTGCTGGACTTGTATGGGATTGTCTTC 3395
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3396 TTGATTTGAATTGTACCGTCTTTGTTGACACAGTAGGGCTGGGCAGTGTTTAATCCTTCCATTTTATAGATTTT 3469
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3470 TTTTTAATCAGGCCTTTTGGACTTCATTCATAATTTTGCAATAATCTCTTTTCCCTTGTCATGCAAGCCAAAAA 3543
Query 1861 -------------------------------------------------------------------------- 1860
Sbjct 3544 TATACCAGTAAAACAGATTCTGACGTGTTTGTAGTTATCAAATGAATGGCTCGAAACACTTCTCAAAAGGATAT 3617
Query 1861 -------------------------------------- 1860
Sbjct 3618 ACGTATTGACCCCAACAATAAATGTTTGTGGCTAGTGA 3655
